RNA–Protein interactions for RNA: ENST00000253024.9

TRIM28-201, Transcript of tripartite motif containing 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM28, Length 2,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-201ENST00000253024 PCSK1P29120 753 aa21.47■■□□□ 1.03
TRIM28-201ENST00000253024 CHN2P52757 468 aa21.47■■□□□ 1.03
TRIM28-201ENST00000253024 MRPS6P82932 125 aaKnown RBP21.47■■□□□ 1.03
TRIM28-201ENST00000253024 PURAQ00577 322 aaKnown RBP21.47■■□□□ 1.03
TRIM28-201ENST00000253024 ECT2LQ008S8 904 aa21.47■■□□□ 1.03
TRIM28-201ENST00000253024 GALNT3Q14435 633 aa21.47■■□□□ 1.03
TRIM28-201ENST00000253024 AP1ARQ63HQ0 302 aa21.47■■□□□ 1.03
TRIM28-201ENST00000253024 IFNEQ86WN2 208 aa21.47■■□□□ 1.03
TRIM28-201ENST00000253024 RP9Q8TA86 221 aaKnown RBP21.47■■□□□ 1.03
TRIM28-201ENST00000253024 HMCESQ96FZ2 354 aa21.47■■□□□ 1.03
TRIM28-201ENST00000253024 PARK7Q99497 189 aaKnown RBP21.47■■□□□ 1.03
TRIM28-201ENST00000253024 CENPKQ9BS16 269 aa21.47■■□□□ 1.03
TRIM28-201ENST00000253024 CAMSAP3Q9P1Y5 1249 aaPredicted RBP21.47■■□□□ 1.03
TRIM28-201ENST00000253024 EGFL7Q9UHF1 273 aa21.47■■□□□ 1.03
TRIM28-201ENST00000253024 A8MT66 165 aa21.47■■□□□ 1.03
TRIM28-201ENST00000253024 E9PAM4 449 aa21.47■■□□□ 1.03
TRIM28-201ENST00000253024 B4GALT3O60512 393 aa21.47■■□□□ 1.03
TRIM28-201ENST00000253024 CASP2P42575 452 aa21.47■■□□□ 1.03
TRIM28-201ENST00000253024 CPT1AP50416 773 aa21.47■■□□□ 1.03
TRIM28-201ENST00000253024 PTPRRQ15256 657 aa21.47■■□□□ 1.03
TRIM28-201ENST00000253024 CUZD1Q86UP6 607 aa21.47■■□□□ 1.03
TRIM28-201ENST00000253024 MYO1HQ8N1T3 1032 aa21.47■■□□□ 1.03
TRIM28-201ENST00000253024 ISL2Q96A47 359 aa21.47■■□□□ 1.03
TRIM28-201ENST00000253024 BTRCQ9Y297 605 aa21.47■■□□□ 1.03
TRIM28-201ENST00000253024 IRAK2O43187 625 aa21.46■■□□□ 1.03
TRIM28-201ENST00000253024 CDKN2DP55273 166 aa21.46■■□□□ 1.03
TRIM28-201ENST00000253024 PRAMEP78395 509 aa21.46■■□□□ 1.03
TRIM28-201ENST00000253024 NSUN2Q08J23 767 aaKnown RBP eCLIP21.46■■□□□ 1.03
TRIM28-201ENST00000253024 MAP2K5Q13163 448 aa21.46■■□□□ 1.03
TRIM28-201ENST00000253024 FASTKQ14296 549 aaKnown RBP21.46■■□□□ 1.03
TRIM28-201ENST00000253024 FAM110CQ1W6H9 321 aa21.46■■□□□ 1.03
TRIM28-201ENST00000253024 KIF19Q2TAC6 998 aa21.46■■□□□ 1.03
TRIM28-201ENST00000253024 PLA2G4EQ3MJ16 856 aa21.46■■□□□ 1.03
TRIM28-201ENST00000253024 PM20D1Q6GTS8 502 aa21.46■■□□□ 1.03
TRIM28-201ENST00000253024 RBM44Q6ZP01 1051 aaKnown RBP21.46■■□□□ 1.03
TRIM28-201ENST00000253024 LINC00523Q86TU6 105 aa21.46■■□□□ 1.03
TRIM28-201ENST00000253024 SPATA2LQ8IUW3 424 aaPredicted RBP21.46■■□□□ 1.03
TRIM28-201ENST00000253024 CFAP52Q8N1V2 620 aa21.46■■□□□ 1.03
TRIM28-201ENST00000253024 PDCD6IPQ8WUM4 868 aaKnown RBP21.46■■□□□ 1.03
TRIM28-201ENST00000253024 NSUN5Q96P11 429 aaKnown RBP21.46■■□□□ 1.03
TRIM28-201ENST00000253024 CIB1Q99828 191 aa21.46■■□□□ 1.03
TRIM28-201ENST00000253024 SH3GL3Q99963 347 aa21.46■■□□□ 1.03
TRIM28-201ENST00000253024 ADAM2Q99965 735 aa21.46■■□□□ 1.03
TRIM28-201ENST00000253024 PADI3Q9ULW8 664 aa21.46■■□□□ 1.03
TRIM28-201ENST00000253024 LZTS1Q9Y250 596 aa21.46■■□□□ 1.03
TRIM28-201ENST00000253024 MT-ND1P03886 318 aa21.46■■□□□ 1.03
TRIM28-201ENST00000253024 CKMT2P17540 419 aa21.46■■□□□ 1.03
TRIM28-201ENST00000253024 PSME3P61289 254 aa21.46■■□□□ 1.03
TRIM28-201ENST00000253024 TRIM32Q13049 653 aa21.46■■□□□ 1.03
TRIM28-201ENST00000253024 CAPRIN1Q14444 709 aaKnown RBP21.46■■□□□ 1.03
TRIM28-201ENST00000253024 MTX3Q5HYI7 312 aa21.46■■□□□ 1.03
TRIM28-201ENST00000253024 ZNF467Q7Z7K2 595 aaPredicted RBP21.46■■□□□ 1.03
TRIM28-201ENST00000253024 HMGCLL1Q8TB92 370 aa21.46■■□□□ 1.03
TRIM28-201ENST00000253024 C3orf30Q96M34 536 aa21.46■■□□□ 1.03
TRIM28-201ENST00000253024 HEMK1Q9Y5R4 338 aaPredicted RBP21.46■■□□□ 1.03
TRIM28-201ENST00000253024 GOLGA8CPA6NN73 597 aa21.45■■□□□ 1.03
TRIM28-201ENST00000253024 ERI2A8K979 691 aaKnown RBP21.45■■□□□ 1.03
TRIM28-201ENST00000253024 TARM1B6A8C7 271 aa21.45■■□□□ 1.03
TRIM28-201ENST00000253024 UBFD1O14562 309 aaKnown RBP21.45■■□□□ 1.03
TRIM28-201ENST00000253024 MTSS1O43312 755 aa21.45■■□□□ 1.03
TRIM28-201ENST00000253024 CDC42EP1Q00587 391 aa21.45■■□□□ 1.03
TRIM28-201ENST00000253024 PLIN5Q00G26 463 aa21.45■■□□□ 1.03
TRIM28-201ENST00000253024 ROR2Q01974 943 aaKnown RBP21.45■■□□□ 1.03
TRIM28-201ENST00000253024 INTS6LQ5JSJ4 861 aaKnown RBP21.45■■□□□ 1.03
TRIM28-201ENST00000253024 RARS2Q5T160 578 aaKnown RBP21.45■■□□□ 1.03
TRIM28-201ENST00000253024 UGT2A3Q6UWM9 527 aa21.45■■□□□ 1.03
TRIM28-201ENST00000253024 TMEM207Q6UWW9 146 aa21.45■■□□□ 1.03
TRIM28-201ENST00000253024 SCD5Q86SK9 330 aa21.45■■□□□ 1.03
TRIM28-201ENST00000253024 METTL23Q86XA0 190 aa21.45■■□□□ 1.03
TRIM28-201ENST00000253024 TBATAQ96M53 351 aa21.45■■□□□ 1.03
TRIM28-201ENST00000253024 MRPL1Q9BYD6 325 aaKnown RBP21.45■■□□□ 1.03
TRIM28-201ENST00000253024 VCX3BQ9H321 246 aa21.45■■□□□ 1.03
TRIM28-201ENST00000253024 NEU3Q9UQ49 428 aa21.45■■□□□ 1.03
TRIM28-201ENST00000253024 SLC27A5Q9Y2P5 690 aa21.45■■□□□ 1.03
TRIM28-201ENST00000253024 ARL5AQ9Y689 179 aa21.45■■□□□ 1.03
TRIM28-201ENST00000253024 PRRC2BQ5JSZ5 2229 aaKnown RBP21.45■■□□□ 1.02
TRIM28-201ENST00000253024 ZNF839A8K0R7 811 aa21.45■■□□□ 1.02
TRIM28-201ENST00000253024 USP46P62068 366 aa21.45■■□□□ 1.02
TRIM28-201ENST00000253024 TAF1CQ15572 869 aaPredicted RBP21.45■■□□□ 1.02
TRIM28-201ENST00000253024 DBN1Q16643 649 aa21.45■■□□□ 1.02
TRIM28-201ENST00000253024 SYT17Q9BSW7 474 aa21.45■■□□□ 1.02
TRIM28-201ENST00000253024 SLC38A7Q9NVC3 462 aa21.45■■□□□ 1.02
TRIM28-201ENST00000253024 AURKCQ9UQB9 309 aa21.45■■□□□ 1.02
TRIM28-201ENST00000253024 ANXA9O76027 345 aa21.45■■□□□ 1.02
TRIM28-201ENST00000253024 ODC1P11926 461 aa21.45■■□□□ 1.02
TRIM28-201ENST00000253024 ARL1P40616 181 aaPredicted RBP21.45■■□□□ 1.02
TRIM28-201ENST00000253024 RAP1GAP2Q684P5 730 aa21.45■■□□□ 1.02
TRIM28-201ENST00000253024 DDIASQ8IXT1 998 aa21.45■■□□□ 1.02
TRIM28-201ENST00000253024 ATAD1Q8NBU5 361 aa21.45■■□□□ 1.02
TRIM28-201ENST00000253024 MCMBPQ9BTE3 642 aa21.45■■□□□ 1.02
TRIM28-201ENST00000253024 IGSF5Q9NSI5 407 aa21.45■■□□□ 1.02
TRIM28-201ENST00000253024 UXTQ9UBK9 157 aaPredicted RBP21.45■■□□□ 1.02
TRIM28-201ENST00000253024 FAM50BQ9Y247 325 aa21.45■■□□□ 1.02
TRIM28-201ENST00000253024 UBA6A0AVT1 1052 aaPredicted RBP21.44■■□□□ 1.02
TRIM28-201ENST00000253024 PRORSD1PA6NEY8 169 aa21.44■■□□□ 1.02
TRIM28-201ENST00000253024 UBDO15205 165 aa21.44■■□□□ 1.02
TRIM28-201ENST00000253024 TIPRLO75663 272 aa21.44■■□□□ 1.02
TRIM28-201ENST00000253024 SEC24DO94855 1032 aaPredicted RBP21.44■■□□□ 1.02
TRIM28-201ENST00000253024 ATP5BP06576 529 aaKnown RBP21.44■■□□□ 1.02
TRIM28-201ENST00000253024 FOXA1P55317 472 aa21.44■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms