RNA–Protein interactions for RNA: ENST00000238112.7

CPSF3-201, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-201ENST00000238112 HEATR9A2RTY3 570 aa18.86■□□□□ 0.61
CPSF3-201ENST00000238112 A8MT66 165 aa18.86■□□□□ 0.61
CPSF3-201ENST00000238112 MSI1O43347 362 aaKnown RBP18.86■□□□□ 0.61
CPSF3-201ENST00000238112 OR6B1O95007 311 aa18.86■□□□□ 0.61
CPSF3-201ENST00000238112 LSAMPQ13449 338 aa18.86■□□□□ 0.61
CPSF3-201ENST00000238112 EIF4EBP2Q13542 120 aaPredicted RBP18.86■□□□□ 0.61
CPSF3-201ENST00000238112 IRF5Q13568 498 aa18.86■□□□□ 0.61
CPSF3-201ENST00000238112 FASTKQ14296 549 aaKnown RBP18.86■□□□□ 0.61
CPSF3-201ENST00000238112 C6orf52Q5T4I8 152 aa18.86■□□□□ 0.61
CPSF3-201ENST00000238112 MANEALQ5VSG8 457 aa18.86■□□□□ 0.61
CPSF3-201ENST00000238112 ISLR2Q6UXK2 745 aa18.86■□□□□ 0.61
CPSF3-201ENST00000238112 CHSY3Q70JA7 882 aa18.86■□□□□ 0.61
CPSF3-201ENST00000238112 CUZD1Q86UP6 607 aa18.86■□□□□ 0.61
CPSF3-201ENST00000238112 AHI1Q8N157 1196 aa18.86■□□□□ 0.61
CPSF3-201ENST00000238112 DGCR14Q96DF8 476 aaKnown RBP18.86■□□□□ 0.61
CPSF3-201ENST00000238112 TSPAN17Q96FV3 270 aa18.86■□□□□ 0.61
CPSF3-201ENST00000238112 MRPS26Q9BYN8 205 aaKnown RBP18.86■□□□□ 0.61
CPSF3-201ENST00000238112 MEAF6Q9HAF1 191 aa18.86■□□□□ 0.61
CPSF3-201ENST00000238112 TMLHEQ9NVH6 421 aa18.86■□□□□ 0.61
CPSF3-201ENST00000238112 FLRT1Q9NZU1 646 aa18.86■□□□□ 0.61
CPSF3-201ENST00000238112 GIT1Q9Y2X7 761 aa18.86■□□□□ 0.61
CPSF3-201ENST00000238112 PSMD12O00232 456 aaPredicted RBP18.85■□□□□ 0.61
CPSF3-201ENST00000238112 GPC4O75487 556 aa18.85■□□□□ 0.61
CPSF3-201ENST00000238112 B3GAT3O94766 335 aa18.85■□□□□ 0.61
CPSF3-201ENST00000238112 RBP1P09455 135 aa18.85■□□□□ 0.61
CPSF3-201ENST00000238112 CLCN5P51795 746 aa18.85■□□□□ 0.61
CPSF3-201ENST00000238112 WNT3AP56704 352 aa18.85■□□□□ 0.61
CPSF3-201ENST00000238112 MAP7Q14244 749 aa18.85■□□□□ 0.61
CPSF3-201ENST00000238112 TRIM25Q14258 630 aaKnown RBP18.85■□□□□ 0.61
CPSF3-201ENST00000238112 AGKQ53H12 422 aa18.85■□□□□ 0.61
CPSF3-201ENST00000238112 ZFRQ96KR1 1074 aaKnown RBP18.85■□□□□ 0.61
CPSF3-201ENST00000238112 OLFM1Q99784 485 aa18.85■□□□□ 0.61
CPSF3-201ENST00000238112 UNC93B1Q9H1C4 597 aa18.85■□□□□ 0.61
CPSF3-201ENST00000238112 GTF3C5Q9Y5Q8 519 aaPredicted RBP18.85■□□□□ 0.61
CPSF3-201ENST00000238112 TRPV2Q9Y5S1 764 aa18.85■□□□□ 0.61
CPSF3-201ENST00000238112 RNASEH2AO75792 299 aaKnown RBP18.85■□□□□ 0.61
CPSF3-201ENST00000238112 MOCS2O96007 188 aaPredicted RBP18.85■□□□□ 0.61
CPSF3-201ENST00000238112 MYCNP04198 464 aaPredicted RBP18.85■□□□□ 0.61
CPSF3-201ENST00000238112 CCDC166P0CW27 439 aa18.85■□□□□ 0.61
CPSF3-201ENST00000238112 RGS2P41220 211 aa18.85■□□□□ 0.61
CPSF3-201ENST00000238112 CLCN2P51788 898 aa18.85■□□□□ 0.61
CPSF3-201ENST00000238112 PLK1P53350 603 aa18.85■□□□□ 0.61
CPSF3-201ENST00000238112 MAP2K5Q13163 448 aa18.85■□□□□ 0.61
CPSF3-201ENST00000238112 LARP7Q4G0J3 582 aaKnown RBP eCLIP18.85■□□□□ 0.61
CPSF3-201ENST00000238112 NOMO2Q5JPE7 1267 aa18.85■□□□□ 0.61
CPSF3-201ENST00000238112 REP15Q6BDI9 236 aa18.85■□□□□ 0.61
CPSF3-201ENST00000238112 TMEM102Q8N9M5 508 aaPredicted RBP18.85■□□□□ 0.61
CPSF3-201ENST00000238112 ATP6V1E2Q96A05 226 aa18.85■□□□□ 0.61
CPSF3-201ENST00000238112 EME1Q96AY2 570 aa18.85■□□□□ 0.61
CPSF3-201ENST00000238112 NMD3Q96D46 503 aaKnown RBP18.85■□□□□ 0.61
CPSF3-201ENST00000238112 PHF21BQ96EK2 531 aa18.85■□□□□ 0.61
CPSF3-201ENST00000238112 SMOC2Q9H3U7 446 aa18.85■□□□□ 0.61
CPSF3-201ENST00000238112 CACNA2D2Q9NY47 1150 aa18.85■□□□□ 0.61
CPSF3-201ENST00000238112 PLK2Q9NYY3 685 aa18.85■□□□□ 0.61
CPSF3-201ENST00000238112 CCDC167Q9P0B6 97 aa18.85■□□□□ 0.61
CPSF3-201ENST00000238112 PCDHGB4Q9UN71 923 aa18.85■□□□□ 0.61
CPSF3-201ENST00000238112 PCDHGB5Q9Y5G0 923 aa18.85■□□□□ 0.61
CPSF3-201ENST00000238112 E7ENX8 843 aa18.84■□□□□ 0.61
CPSF3-201ENST00000238112 FAM58BPP0C7Q3 252 aa18.84■□□□□ 0.61
CPSF3-201ENST00000238112 KCNA5P22460 613 aa18.84■□□□□ 0.61
CPSF3-201ENST00000238112 HOXC8P31273 242 aa18.84■□□□□ 0.61
CPSF3-201ENST00000238112 PSMD8P48556 350 aa18.84■□□□□ 0.61
CPSF3-201ENST00000238112 C1QTNF8P60827 252 aa18.84■□□□□ 0.61
CPSF3-201ENST00000238112 SLC5A9Q2M3M2 681 aa18.84■□□□□ 0.61
CPSF3-201ENST00000238112 ZNF789Q5FWF6 425 aa18.84■□□□□ 0.61
CPSF3-201ENST00000238112 IL23RQ5VWK5 629 aa18.84■□□□□ 0.61
CPSF3-201ENST00000238112 AGMOQ6ZNB7 445 aa18.84■□□□□ 0.61
CPSF3-201ENST00000238112 SLC22A9Q8IVM8 553 aa18.84■□□□□ 0.61
CPSF3-201ENST00000238112 RTL3Q8N8U3 475 aaKnown RBP18.84■□□□□ 0.61
CPSF3-201ENST00000238112 CASP10Q92851 521 aa18.84■□□□□ 0.61
CPSF3-201ENST00000238112 TOP1MTQ969P6 601 aa18.84■□□□□ 0.61
CPSF3-201ENST00000238112 ZNF696Q9H7X3 374 aa18.84■□□□□ 0.61
CPSF3-201ENST00000238112 MPP6Q9NZW5 540 aa18.84■□□□□ 0.61
CPSF3-201ENST00000238112 IPO11Q9UI26 975 aaKnown RBP18.84■□□□□ 0.61
CPSF3-201ENST00000238112 AP4S1Q9Y587 144 aa18.84■□□□□ 0.61
CPSF3-201ENST00000238112 FNDC1Q4ZHG4 1894 aaPredicted RBP18.84■□□□□ 0.61
CPSF3-201ENST00000238112 E9PAM4 449 aa18.84■□□□□ 0.61
CPSF3-201ENST00000238112 CAPNS1P04632 268 aa18.84■□□□□ 0.61
CPSF3-201ENST00000238112 TFAP2AP05549 437 aa18.84■□□□□ 0.61
CPSF3-201ENST00000238112 CTSHP09668 335 aa18.84■□□□□ 0.61
CPSF3-201ENST00000238112 BRCC3P46736 316 aa18.84■□□□□ 0.61
CPSF3-201ENST00000238112 LEPRP48357 1165 aaKnown RBP18.84■□□□□ 0.61
CPSF3-201ENST00000238112 CDKL1Q00532 357 aa18.84■□□□□ 0.61
CPSF3-201ENST00000238112 FSCN1Q16658 493 aaKnown RBP18.84■□□□□ 0.61
CPSF3-201ENST00000238112 RPS27LQ71UM5 84 aaKnown RBP18.84■□□□□ 0.61
CPSF3-201ENST00000238112 LRRC49Q8IUZ0 686 aa18.84■□□□□ 0.61
CPSF3-201ENST00000238112 CNOT11Q9UKZ1 510 aaKnown RBP18.84■□□□□ 0.61
CPSF3-201ENST00000238112 ATP6V1B1P15313 513 aa18.83■□□□□ 0.61
CPSF3-201ENST00000238112 SERPINH1P50454 418 aaKnown RBP18.83■□□□□ 0.61
CPSF3-201ENST00000238112 SLC5A3P53794 718 aa18.83■□□□□ 0.61
CPSF3-201ENST00000238112 PURAQ00577 322 aaKnown RBP18.83■□□□□ 0.61
CPSF3-201ENST00000238112 MYBPC1Q00872 1141 aa18.83■□□□□ 0.61
CPSF3-201ENST00000238112 LRP8Q14114 963 aa18.83■□□□□ 0.61
CPSF3-201ENST00000238112 GK3PQ14409 553 aa18.83■□□□□ 0.61
CPSF3-201ENST00000238112 ACAP2Q15057 778 aa18.83■□□□□ 0.61
CPSF3-201ENST00000238112 PPP1R3AQ16821 1122 aa18.83■□□□□ 0.61
CPSF3-201ENST00000238112 MORN1Q5T089 497 aa18.83■□□□□ 0.61
CPSF3-201ENST00000238112 IYDQ6PHW0 289 aa18.83■□□□□ 0.61
CPSF3-201ENST00000238112 RBM44Q6ZP01 1051 aaKnown RBP18.83■□□□□ 0.61
CPSF3-201ENST00000238112 HASPINQ8TF76 798 aa18.83■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms