RNA–Protein interactions for RNA: ENST00000223084.7

LSM5-201, Transcript of LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM5, Length 1,295 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM5-201ENST00000223084 TMEM259Q4ZIN3 620 aa12.8□□□□□ -0.36
LSM5-201ENST00000223084 SETMARQ53H47 684 aaPredicted RBP12.8□□□□□ -0.36
LSM5-201ENST00000223084 TFDP3Q5H9I0 405 aa12.8□□□□□ -0.36
LSM5-201ENST00000223084 CFAP58Q5T655 872 aa12.8□□□□□ -0.36
LSM5-201ENST00000223084 NAPEPLDQ6IQ20 393 aa12.8□□□□□ -0.36
LSM5-201ENST00000223084 AADACL2Q6P093 401 aa12.8□□□□□ -0.36
LSM5-201ENST00000223084 NEK5Q6P3R8 708 aa12.8□□□□□ -0.36
LSM5-201ENST00000223084 ERMP1Q7Z2K6 904 aa12.8□□□□□ -0.36
LSM5-201ENST00000223084 NT5DC3Q86UY8 548 aa12.8□□□□□ -0.36
LSM5-201ENST00000223084 CCDC13Q8IYE1 715 aa12.8□□□□□ -0.36
LSM5-201ENST00000223084 BBS5Q8N3I7 341 aa12.8□□□□□ -0.36
LSM5-201ENST00000223084 EXD1Q8NHP7 514 aa12.8□□□□□ -0.36
LSM5-201ENST00000223084 MAML1Q92585 1016 aa12.8□□□□□ -0.36
LSM5-201ENST00000223084 RAB7BQ96AH8 199 aa12.8□□□□□ -0.36
LSM5-201ENST00000223084 HAUS1Q96CS2 278 aa12.8□□□□□ -0.36
LSM5-201ENST00000223084 HDAC11Q96DB2 347 aa12.8□□□□□ -0.36
LSM5-201ENST00000223084 CALR3Q96L12 384 aaKnown RBP12.8□□□□□ -0.36
LSM5-201ENST00000223084 ZNF641Q96N77 438 aaPredicted RBP12.8□□□□□ -0.36
LSM5-201ENST00000223084 ZNF830Q96NB3 372 aaPredicted RBP12.8□□□□□ -0.36
LSM5-201ENST00000223084 NUDCD1Q96RS6 583 aa12.8□□□□□ -0.36
LSM5-201ENST00000223084 HEMGNQ9BXL5 484 aa12.8□□□□□ -0.36
LSM5-201ENST00000223084 PCDH12Q9NPG4 1184 aa12.8□□□□□ -0.36
LSM5-201ENST00000223084 RBM22Q9NW64 420 aaKnown RBP eCLIP12.8□□□□□ -0.36
LSM5-201ENST00000223084 TPX2Q9ULW0 747 aaKnown RBP12.8□□□□□ -0.36
LSM5-201ENST00000223084 PACSIN2Q9UNF0 486 aaPredicted RBP12.8□□□□□ -0.36
LSM5-201ENST00000223084 ANKRD6Q9Y2G4 727 aa12.8□□□□□ -0.36
LSM5-201ENST00000223084 SBDSQ9Y3A5 250 aaKnown RBP eCLIP12.8□□□□□ -0.36
LSM5-201ENST00000223084 TTLL3Q9Y4R7 772 aa12.8□□□□□ -0.36
LSM5-201ENST00000223084 PCDHGC4Q9Y5F7 938 aa12.8□□□□□ -0.36
LSM5-201ENST00000223084 PCDHA3Q9Y5H8 950 aa12.8□□□□□ -0.36
LSM5-201ENST00000223084 CAPN6Q9Y6Q1 641 aa12.8□□□□□ -0.36
LSM5-201ENST00000223084 TP53BP1Q12888 1972 aaPredicted RBP12.8□□□□□ -0.36
LSM5-201ENST00000223084 LRRK1Q38SD2 2015 aa12.79□□□□□ -0.36
LSM5-201ENST00000223084 UPK3BL1B0FP48 263 aa12.79□□□□□ -0.36
LSM5-201ENST00000223084 UPK3BL2E5RIL1 263 aa12.79□□□□□ -0.36
LSM5-201ENST00000223084 H0Y8X5 98 aa12.79□□□□□ -0.36
LSM5-201ENST00000223084 KCNK1O00180 336 aa12.79□□□□□ -0.36
LSM5-201ENST00000223084 TRAFD1O14545 582 aaPredicted RBP12.79□□□□□ -0.36
LSM5-201ENST00000223084 RAD51BO15315 384 aa12.79□□□□□ -0.36
LSM5-201ENST00000223084 TSPAN6O43657 245 aa12.79□□□□□ -0.36
LSM5-201ENST00000223084 MMP20O60882 483 aa12.79□□□□□ -0.36
LSM5-201ENST00000223084 PAK4O96013 591 aaPredicted RBP12.79□□□□□ -0.36
LSM5-201ENST00000223084 JCHAINP01591 159 aa12.79□□□□□ -0.36
LSM5-201ENST00000223084 HLA-DQB2P05538 268 aa12.79□□□□□ -0.36
LSM5-201ENST00000223084 CCNB1P14635 433 aa12.79□□□□□ -0.36
LSM5-201ENST00000223084 PECAM1P16284 738 aaPredicted RBP12.79□□□□□ -0.36
LSM5-201ENST00000223084 CTNNA2P26232 953 aa12.79□□□□□ -0.36
LSM5-201ENST00000223084 CD38P28907 300 aa12.79□□□□□ -0.36
LSM5-201ENST00000223084 SERPINA4P29622 427 aa12.79□□□□□ -0.36
LSM5-201ENST00000223084 HSPA9P38646 679 aaKnown RBP12.79□□□□□ -0.36
LSM5-201ENST00000223084 PEX5P50542 639 aa12.79□□□□□ -0.36
LSM5-201ENST00000223084 C21orf59P57076 290 aa12.79□□□□□ -0.36
LSM5-201ENST00000223084 CLDN2P57739 230 aa12.79□□□□□ -0.36
LSM5-201ENST00000223084 RPS21P63220 83 aaKnown RBP12.79□□□□□ -0.36
LSM5-201ENST00000223084 DSC2Q02487 901 aa12.79□□□□□ -0.36
LSM5-201ENST00000223084 PPIDQ08752 370 aaKnown RBP12.79□□□□□ -0.36
LSM5-201ENST00000223084 AP1B1Q10567 949 aa12.79□□□□□ -0.36
LSM5-201ENST00000223084 TRAF2Q12933 501 aa12.79□□□□□ -0.36
LSM5-201ENST00000223084 TFDP2Q14188 446 aa12.79□□□□□ -0.36
LSM5-201ENST00000223084 IHHQ14623 411 aa12.79□□□□□ -0.36
LSM5-201ENST00000223084 PUM1Q14671 1186 aaKnown RBP eCLIP12.79□□□□□ -0.36
LSM5-201ENST00000223084 PDK1Q15118 436 aa12.79□□□□□ -0.36
LSM5-201ENST00000223084 UGP2Q16851 508 aa12.79□□□□□ -0.36
LSM5-201ENST00000223084 HLA-BQ31612 363 aa12.79□□□□□ -0.36
LSM5-201ENST00000223084 PRAMEF14Q5SWL7 426 aa12.79□□□□□ -0.36
LSM5-201ENST00000223084 TXLNBQ8N3L3 684 aa12.79□□□□□ -0.36
LSM5-201ENST00000223084 PAF1Q8N7H5 531 aa12.79□□□□□ -0.36
LSM5-201ENST00000223084 CCDC112Q8NEF3 446 aa12.79□□□□□ -0.36
LSM5-201ENST00000223084 ALG3Q92685 438 aa12.79□□□□□ -0.36
LSM5-201ENST00000223084 ECHDC3Q96DC8 303 aa12.79□□□□□ -0.36
LSM5-201ENST00000223084 RBM41Q96IZ5 413 aaKnown RBP12.79□□□□□ -0.36
LSM5-201ENST00000223084 OLFM3Q96PB7 478 aa12.79□□□□□ -0.36
LSM5-201ENST00000223084 SEMA3CQ99985 751 aa12.79□□□□□ -0.36
LSM5-201ENST00000223084 HERPUD2Q9BSE4 406 aa12.79□□□□□ -0.36
LSM5-201ENST00000223084 RTKNQ9BST9 563 aa12.79□□□□□ -0.36
LSM5-201ENST00000223084 WRAP53Q9BUR4 548 aaKnown RBP12.79□□□□□ -0.36
LSM5-201ENST00000223084 SLC17A9Q9BYT1 436 aa12.79□□□□□ -0.36
LSM5-201ENST00000223084 CEP41Q9BYV8 373 aa12.79□□□□□ -0.36
LSM5-201ENST00000223084 GAREM1Q9H706 876 aa12.79□□□□□ -0.36
LSM5-201ENST00000223084 GUCA1BQ9UMX6 200 aa12.79□□□□□ -0.36
LSM5-201ENST00000223084 DMTF1Q9Y222 760 aa12.79□□□□□ -0.36
LSM5-201ENST00000223084 FNDC3AQ9Y2H6 1198 aaKnown RBP12.79□□□□□ -0.36
LSM5-201ENST00000223084 PCNX2A6NKB5 2137 aa12.79□□□□□ -0.36
LSM5-201ENST00000223084 EPG5Q9HCE0 2579 aa12.78□□□□□ -0.36
LSM5-201ENST00000223084 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP12.78□□□□□ -0.36
LSM5-201ENST00000223084 PRAMEF26H0Y7S4 382 aa12.78□□□□□ -0.36
LSM5-201ENST00000223084 TM4SF5O14894 197 aa12.78□□□□□ -0.36
LSM5-201ENST00000223084 VILLO15195 856 aa12.78□□□□□ -0.36
LSM5-201ENST00000223084 OPHN1O60890 802 aa12.78□□□□□ -0.36
LSM5-201ENST00000223084 NEBLO76041 1014 aa12.78□□□□□ -0.36
LSM5-201ENST00000223084 HNRNPA2B1P22626 353 aaKnown RBP12.78□□□□□ -0.36
LSM5-201ENST00000223084 NUDT1P36639 197 aa12.78□□□□□ -0.36
LSM5-201ENST00000223084 CTSKP43235 329 aa12.78□□□□□ -0.36
LSM5-201ENST00000223084 RWDD2BP57060 319 aa12.78□□□□□ -0.36
LSM5-201ENST00000223084 NIPAL4Q0D2K0 466 aa12.78□□□□□ -0.36
LSM5-201ENST00000223084 ZBTB17Q13105 803 aa12.78□□□□□ -0.36
LSM5-201ENST00000223084 STAT4Q14765 748 aa12.78□□□□□ -0.36
LSM5-201ENST00000223084 TMEM52BQ4KMG9 183 aa12.78□□□□□ -0.36
LSM5-201ENST00000223084 KIAA1161Q6NSJ0 714 aa12.78□□□□□ -0.36
LSM5-201ENST00000223084 BRAT1Q6PJG6 821 aa12.78□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 60.8 ms