RNA–Protein interactions for RNA: ENST00000637968.1

SCN1A-216, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,614 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-216ENST00000637968 SEMA6BQ9H3T3 888 aa5.79□□□□□ -1.48
SCN1A-216ENST00000637968 KLHL31Q9H511 634 aa5.79□□□□□ -1.48
SCN1A-216ENST00000637968 LY9Q9HBG7 655 aa5.79□□□□□ -1.48
SCN1A-216ENST00000637968 PRDM8Q9NQV8 689 aa5.79□□□□□ -1.48
SCN1A-216ENST00000637968 KRT84Q9NSB2 600 aa5.79□□□□□ -1.48
SCN1A-216ENST00000637968 ACTR10Q9NZ32 417 aa5.79□□□□□ -1.48
SCN1A-216ENST00000637968 CPNE7Q9UBL6 633 aa5.79□□□□□ -1.48
SCN1A-216ENST00000637968 OGDHLQ9ULD0 1010 aa5.79□□□□□ -1.48
SCN1A-216ENST00000637968 GNGT2O14610 69 aa5.78□□□□□ -1.48
SCN1A-216ENST00000637968 WEE2P0C1S8 567 aa5.78□□□□□ -1.48
SCN1A-216ENST00000637968 CYP2A7P20853 494 aa5.78□□□□□ -1.48
SCN1A-216ENST00000637968 EIF4A1P60842 406 aaKnown RBP5.78□□□□□ -1.48
SCN1A-216ENST00000637968 ABRQ12979 859 aa5.78□□□□□ -1.48
SCN1A-216ENST00000637968 CAPRIN1Q14444 709 aaKnown RBP5.78□□□□□ -1.48
SCN1A-216ENST00000637968 PDZK1Q5T2W1 519 aa5.78□□□□□ -1.48
SCN1A-216ENST00000637968 DPP8Q6V1X1 898 aaPredicted RBP5.78□□□□□ -1.48
SCN1A-216ENST00000637968 BNIPLQ7Z465 357 aa5.78□□□□□ -1.48
SCN1A-216ENST00000637968 LINC00523Q86TU6 105 aa5.78□□□□□ -1.48
SCN1A-216ENST00000637968 CARM1Q86X55 608 aa5.78□□□□□ -1.48
SCN1A-216ENST00000637968 HID1Q8IV36 788 aa5.78□□□□□ -1.48
SCN1A-216ENST00000637968 BLIDQ8IZY5 108 aa5.78□□□□□ -1.48
SCN1A-216ENST00000637968 C8orf59Q8N0T1 100 aaPredicted RBP5.78□□□□□ -1.48
SCN1A-216ENST00000637968 ZNF565Q8N9K5 539 aa5.78□□□□□ -1.48
SCN1A-216ENST00000637968 ATG16L2Q8NAA4 619 aa5.78□□□□□ -1.48
SCN1A-216ENST00000637968 SMG8Q8ND04 991 aaKnown RBP5.78□□□□□ -1.48
SCN1A-216ENST00000637968 PLBD2Q8NHP8 589 aa5.78□□□□□ -1.48
SCN1A-216ENST00000637968 ST8SIA4Q92187 359 aa5.78□□□□□ -1.48
SCN1A-216ENST00000637968 ZUFSPQ96AP4 578 aa5.78□□□□□ -1.48
SCN1A-216ENST00000637968 ZNF597Q96LX8 424 aa5.78□□□□□ -1.48
SCN1A-216ENST00000637968 SPATA9Q9BWV2 254 aa5.78□□□□□ -1.48
SCN1A-216ENST00000637968 AFF4Q9UHB7 1163 aaKnown RBP5.78□□□□□ -1.48
SCN1A-216ENST00000637968 CHORDC1Q9UHD1 332 aaPredicted RBP5.78□□□□□ -1.48
SCN1A-216ENST00000637968 ENOPH1Q9UHY7 261 aa5.78□□□□□ -1.48
SCN1A-216ENST00000637968 USTQ9Y2C2 406 aa5.78□□□□□ -1.48
SCN1A-216ENST00000637968 DERAQ9Y315 318 aa5.78□□□□□ -1.48
SCN1A-216ENST00000637968 RGSL1A5PLK6 1076 aa5.78□□□□□ -1.48
SCN1A-216ENST00000637968 TTLL8A6PVC2 850 aa5.78□□□□□ -1.48
SCN1A-216ENST00000637968 SRP72O76094 671 aaKnown RBP5.78□□□□□ -1.48
SCN1A-216ENST00000637968 FABP1P07148 127 aa5.78□□□□□ -1.48
SCN1A-216ENST00000637968 HEXBP07686 556 aa5.78□□□□□ -1.48
SCN1A-216ENST00000637968 CLEC2LP0C7M8 214 aa5.78□□□□□ -1.48
SCN1A-216ENST00000637968 GPC1P35052 558 aa5.78□□□□□ -1.48
SCN1A-216ENST00000637968 PCP4P48539 62 aa5.78□□□□□ -1.48
SCN1A-216ENST00000637968 ZNF45Q02386 682 aa5.78□□□□□ -1.48
SCN1A-216ENST00000637968 LAPTM5Q13571 262 aa5.78□□□□□ -1.48
SCN1A-216ENST00000637968 CAMK1Q14012 370 aa5.78□□□□□ -1.48
SCN1A-216ENST00000637968 CCDC142Q17RM4 750 aa5.78□□□□□ -1.48
SCN1A-216ENST00000637968 ATP13A5Q4VNC0 1218 aa5.78□□□□□ -1.48
SCN1A-216ENST00000637968 RAP1GAP2Q684P5 730 aa5.78□□□□□ -1.48
SCN1A-216ENST00000637968 AADACL2Q6P093 401 aa5.78□□□□□ -1.48
SCN1A-216ENST00000637968 LMBR1LQ6UX01 489 aa5.78□□□□□ -1.48
SCN1A-216ENST00000637968 ZYG11AQ6WRX3 759 aa5.78□□□□□ -1.48
SCN1A-216ENST00000637968 CREB3L2Q70SY1 520 aa5.78□□□□□ -1.48
SCN1A-216ENST00000637968 P2RY8Q86VZ1 359 aa5.78□□□□□ -1.48
SCN1A-216ENST00000637968 DHFR2Q86XF0 187 aa5.78□□□□□ -1.48
SCN1A-216ENST00000637968 THNSL1Q8IYQ7 743 aa5.78□□□□□ -1.48
SCN1A-216ENST00000637968 KRT78Q8N1N4 520 aa5.78□□□□□ -1.48
SCN1A-216ENST00000637968 CBR4Q8N4T8 237 aa5.78□□□□□ -1.48
SCN1A-216ENST00000637968 PIK3C3Q8NEB9 887 aa5.78□□□□□ -1.48
SCN1A-216ENST00000637968 OR5T2Q8NGG2 359 aa5.78□□□□□ -1.48
SCN1A-216ENST00000637968 ATG4AQ8WYN0 398 aa5.78□□□□□ -1.48
SCN1A-216ENST00000637968 TBRG4Q969Z0 631 aaKnown RBP eCLIP5.78□□□□□ -1.48
SCN1A-216ENST00000637968 LURAP1Q96LR2 239 aa5.78□□□□□ -1.48
SCN1A-216ENST00000637968 FOPNLQ96NB1 174 aa5.78□□□□□ -1.48
SCN1A-216ENST00000637968 SSX3Q99909 188 aa5.78□□□□□ -1.48
SCN1A-216ENST00000637968 PELOQ9BRX2 385 aaKnown RBP5.78□□□□□ -1.48
SCN1A-216ENST00000637968 TEKT3Q9BXF9 490 aa5.78□□□□□ -1.48
SCN1A-216ENST00000637968 GHITMQ9H3K2 345 aa5.78□□□□□ -1.48
SCN1A-216ENST00000637968 PNPLA8Q9NP80 782 aa5.78□□□□□ -1.48
SCN1A-216ENST00000637968 CD93Q9NPY3 652 aa5.78□□□□□ -1.48
SCN1A-216ENST00000637968 RNF112Q9ULX5 631 aa5.78□□□□□ -1.48
SCN1A-216ENST00000637968 AGTPBP1Q9UPW5 1226 aa5.78□□□□□ -1.48
SCN1A-216ENST00000637968 RUVBL2Q9Y230 463 aaKnown RBP5.78□□□□□ -1.48
SCN1A-216ENST00000637968 RNF11Q9Y3C5 154 aa5.78□□□□□ -1.48
SCN1A-216ENST00000637968 CACNG2Q9Y698 323 aa5.78□□□□□ -1.48
SCN1A-216ENST00000637968 MYH11P35749 1972 aa5.78□□□□□ -1.48
SCN1A-216ENST00000637968 ZNF532Q9HCE3 1301 aa5.78□□□□□ -1.48
SCN1A-216ENST00000637968 PI15O43692 258 aa5.78□□□□□ -1.48
SCN1A-216ENST00000637968 TYROBPO43914 113 aa5.78□□□□□ -1.48
SCN1A-216ENST00000637968 ADAM11O75078 769 aa5.78□□□□□ -1.48
SCN1A-216ENST00000637968 TGM6O95932 706 aa5.78□□□□□ -1.48
SCN1A-216ENST00000637968 PLATP00750 562 aa5.78□□□□□ -1.48
SCN1A-216ENST00000637968 SLC2A3P11169 496 aa5.78□□□□□ -1.48
SCN1A-216ENST00000637968 CETPP11597 493 aa5.78□□□□□ -1.48
SCN1A-216ENST00000637968 PHKG2P15735 406 aa5.78□□□□□ -1.48
SCN1A-216ENST00000637968 EPHA3P29320 983 aa5.78□□□□□ -1.48
SCN1A-216ENST00000637968 MSX2P35548 267 aaPredicted RBP5.78□□□□□ -1.48
SCN1A-216ENST00000637968 SLC15A1P46059 708 aa5.78□□□□□ -1.48
SCN1A-216ENST00000637968 HLCSP50747 726 aa5.78□□□□□ -1.48
SCN1A-216ENST00000637968 SPIRE1Q08AE8 756 aa5.78□□□□□ -1.48
SCN1A-216ENST00000637968 PRPSAP1Q14558 356 aa5.78□□□□□ -1.48
SCN1A-216ENST00000637968 STXBP2Q15833 593 aa5.78□□□□□ -1.48
SCN1A-216ENST00000637968 CCNG2Q16589 344 aa5.78□□□□□ -1.48
SCN1A-216ENST00000637968 LIN9Q5TKA1 542 aa5.78□□□□□ -1.48
SCN1A-216ENST00000637968 TIGD7Q6NT04 549 aaPredicted RBP5.78□□□□□ -1.48
SCN1A-216ENST00000637968 PIWIL3Q7Z3Z3 882 aaKnown RBP5.78□□□□□ -1.48
SCN1A-216ENST00000637968 TMPRSS9Q7Z410 1059 aa5.78□□□□□ -1.48
SCN1A-216ENST00000637968 WDR49Q8IV35 697 aa5.78□□□□□ -1.48
SCN1A-216ENST00000637968 BEND7Q8N7W2 519 aaPredicted RBP5.78□□□□□ -1.48
SCN1A-216ENST00000637968 APBB2Q92870 758 aa5.78□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms