RNA–Protein interactions for RNA: ENST00000637578.1

CLN3-260, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,577 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-260ENST00000637578 REXO2Q9Y3B8 237 aaKnown RBP19.49■□□□□ 0.71
CLN3-260ENST00000637578 PCDHA13Q9Y5I0 950 aa19.49■□□□□ 0.71
CLN3-260ENST00000637578 H3BRJ5 948 aa19.48■□□□□ 0.71
CLN3-260ENST00000637578 INSIG1O15503 277 aa19.48■□□□□ 0.71
CLN3-260ENST00000637578 FTH1P19P0C7X4 201 aa19.48■□□□□ 0.71
CLN3-260ENST00000637578 AKT2P31751 481 aa19.48■□□□□ 0.71
CLN3-260ENST00000637578 MAGEA1P43355 309 aa19.48■□□□□ 0.71
CLN3-260ENST00000637578 IL9RQ01113 521 aa19.48■□□□□ 0.71
CLN3-260ENST00000637578 IL10RBQ08334 325 aa19.48■□□□□ 0.71
CLN3-260ENST00000637578 GRM3Q14832 879 aa19.48■□□□□ 0.71
CLN3-260ENST00000637578 KANSL1Q7Z3B3 1105 aa19.48■□□□□ 0.71
CLN3-260ENST00000637578 SLCO6A1Q86UG4 719 aa19.48■□□□□ 0.71
CLN3-260ENST00000637578 ACRBPQ8NEB7 543 aa19.48■□□□□ 0.71
CLN3-260ENST00000637578 CCDC112Q8NEF3 446 aa19.48■□□□□ 0.71
CLN3-260ENST00000637578 ADAMTS14Q8WXS8 1223 aa19.48■□□□□ 0.71
CLN3-260ENST00000637578 LENG8Q96PV6 779 aaPredicted RBP19.48■□□□□ 0.71
CLN3-260ENST00000637578 CSPG4P5Q96PW8 444 aa19.48■□□□□ 0.71
CLN3-260ENST00000637578 FZD3Q9NPG1 666 aa19.48■□□□□ 0.71
CLN3-260ENST00000637578 GPR27Q9NS67 375 aa19.48■□□□□ 0.71
CLN3-260ENST00000637578 CTTNBP2NLQ9P2B4 639 aa19.48■□□□□ 0.71
CLN3-260ENST00000637578 UVRAGQ9P2Y5 699 aa19.48■□□□□ 0.71
CLN3-260ENST00000637578 INTUQ9ULD6 942 aa19.48■□□□□ 0.71
CLN3-260ENST00000637578 CHD8Q9HCK8 2581 aa19.48■□□□□ 0.71
CLN3-260ENST00000637578 TRPM6Q9BX84 2022 aa19.47■□□□□ 0.71
CLN3-260ENST00000637578 TSPAN11A1L157 253 aa19.47■□□□□ 0.71
CLN3-260ENST00000637578 IPO7O95373 1038 aaKnown RBP19.47■□□□□ 0.71
CLN3-260ENST00000637578 TIMP2P16035 220 aa19.47■□□□□ 0.71
CLN3-260ENST00000637578 SPINK2P20155 84 aa19.47■□□□□ 0.71
CLN3-260ENST00000637578 EPHA8P29322 1005 aaPredicted RBP19.47■□□□□ 0.71
CLN3-260ENST00000637578 ARL4AP40617 200 aa19.47■□□□□ 0.71
CLN3-260ENST00000637578 RFTN1Q14699 578 aaPredicted RBP19.47■□□□□ 0.71
CLN3-260ENST00000637578 GCNT7Q6ZNI0 430 aa19.47■□□□□ 0.71
CLN3-260ENST00000637578 ARHGAP36Q6ZRI8 547 aa19.47■□□□□ 0.71
CLN3-260ENST00000637578 TTC7BQ86TV6 843 aa19.47■□□□□ 0.71
CLN3-260ENST00000637578 TP53INP2Q8IXH6 220 aa19.47■□□□□ 0.71
CLN3-260ENST00000637578 ZNF564Q8TBZ8 553 aaPredicted RBP19.47■□□□□ 0.71
CLN3-260ENST00000637578 HSPH1Q92598 858 aa19.47■□□□□ 0.71
CLN3-260ENST00000637578 BMFQ96LC9 184 aa19.47■□□□□ 0.71
CLN3-260ENST00000637578 KLF6Q99612 283 aaPredicted RBP19.47■□□□□ 0.71
CLN3-260ENST00000637578 TMEM121BQ9BXQ6 578 aaPredicted RBP19.47■□□□□ 0.71
CLN3-260ENST00000637578 PCDH18Q9HCL0 1135 aa19.47■□□□□ 0.71
CLN3-260ENST00000637578 ETNK2Q9NVF9 386 aa19.47■□□□□ 0.71
CLN3-260ENST00000637578 GGT7Q9UJ14 662 aa19.47■□□□□ 0.71
CLN3-260ENST00000637578 APOBEC2Q9Y235 224 aaKnown RBP19.47■□□□□ 0.71
CLN3-260ENST00000637578 NEUROG3Q9Y4Z2 214 aa19.47■□□□□ 0.71
CLN3-260ENST00000637578 TNFSF14O43557 240 aa19.46■□□□□ 0.71
CLN3-260ENST00000637578 HYAL3O43820 417 aaPredicted RBP19.46■□□□□ 0.71
CLN3-260ENST00000637578 BUB1BO60566 1050 aaPredicted RBP19.46■□□□□ 0.71
CLN3-260ENST00000637578 PALMO75781 387 aa19.46■□□□□ 0.71
CLN3-260ENST00000637578 PAK4O96013 591 aaPredicted RBP19.46■□□□□ 0.71
CLN3-260ENST00000637578 THEGLP0DJG4 465 aa19.46■□□□□ 0.71
CLN3-260ENST00000637578 AMPD1P23109 780 aa19.46■□□□□ 0.71
CLN3-260ENST00000637578 IL4RP24394 825 aa19.46■□□□□ 0.71
CLN3-260ENST00000637578 SUOXP51687 545 aa19.46■□□□□ 0.71
CLN3-260ENST00000637578 ARSEP51690 589 aa19.46■□□□□ 0.71
CLN3-260ENST00000637578 CCZ1BP86790 482 aa19.46■□□□□ 0.71
CLN3-260ENST00000637578 CCZ1P86791 482 aaPredicted RBP19.46■□□□□ 0.71
CLN3-260ENST00000637578 NSUN2Q08J23 767 aaKnown RBP eCLIP19.46■□□□□ 0.71
CLN3-260ENST00000637578 INAVAQ3KP66 663 aa19.46■□□□□ 0.71
CLN3-260ENST00000637578 GATAD2AQ86YP4 633 aa19.46■□□□□ 0.71
CLN3-260ENST00000637578 TSEN2Q8NCE0 465 aaKnown RBP19.46■□□□□ 0.71
CLN3-260ENST00000637578 EXOC2Q96KP1 924 aa19.46■□□□□ 0.71
CLN3-260ENST00000637578 ZNF641Q96N77 438 aaPredicted RBP19.46■□□□□ 0.71
CLN3-260ENST00000637578 TUBGCP5Q96RT8 1024 aa19.46■□□□□ 0.71
CLN3-260ENST00000637578 DESI2Q9BSY9 194 aa19.46■□□□□ 0.71
CLN3-260ENST00000637578 LUC7LQ9NQ29 371 aaKnown RBP19.46■□□□□ 0.71
CLN3-260ENST00000637578 RCOR3Q9P2K3 495 aaPredicted RBP19.46■□□□□ 0.71
CLN3-260ENST00000637578 IPO11Q9UI26 975 aaKnown RBP19.46■□□□□ 0.71
CLN3-260ENST00000637578 TFR2Q9UP52 801 aa19.46■□□□□ 0.71
CLN3-260ENST00000637578 ITM2BQ9Y287 266 aa19.46■□□□□ 0.71
CLN3-260ENST00000637578 SPEGQ15772 3267 aa19.46■□□□□ 0.71
CLN3-260ENST00000637578 TP53BP1Q12888 1972 aaPredicted RBP19.46■□□□□ 0.71
CLN3-260ENST00000637578 IGLON5A6NGN9 336 aa19.45■□□□□ 0.7
CLN3-260ENST00000637578 DFFAO00273 331 aa19.45■□□□□ 0.7
CLN3-260ENST00000637578 RAD51BO15315 384 aa19.45■□□□□ 0.7
CLN3-260ENST00000637578 ARHGAP6O43182 974 aa19.45■□□□□ 0.7
CLN3-260ENST00000637578 PTMAP06454 111 aaKnown RBP19.45■□□□□ 0.7
CLN3-260ENST00000637578 ATXN1LP0C7T5 689 aaKnown RBP19.45■□□□□ 0.7
CLN3-260ENST00000637578 RGRP47804 291 aa19.45■□□□□ 0.7
CLN3-260ENST00000637578 CLDN2P57739 230 aa19.45■□□□□ 0.7
CLN3-260ENST00000637578 BNIP3Q12983 259 aa19.45■□□□□ 0.7
CLN3-260ENST00000637578 TMCO3Q6UWJ1 677 aa19.45■□□□□ 0.7
CLN3-260ENST00000637578 CHCHD4Q8N4Q1 142 aa19.45■□□□□ 0.7
CLN3-260ENST00000637578 OR13H1Q8NG92 308 aa19.45■□□□□ 0.7
CLN3-260ENST00000637578 ZNF599Q96NL3 588 aa19.45■□□□□ 0.7
CLN3-260ENST00000637578 MYOCQ99972 504 aa19.45■□□□□ 0.7
CLN3-260ENST00000637578 SUV39H2Q9H5I1 410 aa19.45■□□□□ 0.7
CLN3-260ENST00000637578 KLHL11Q9NVR0 708 aa19.45■□□□□ 0.7
CLN3-260ENST00000637578 LCMT1Q9UIC8 334 aa19.45■□□□□ 0.7
CLN3-260ENST00000637578 CEP295Q9C0D2 2601 aa19.45■□□□□ 0.7
CLN3-260ENST00000637578 PROSCO94903 275 aa19.44■□□□□ 0.7
CLN3-260ENST00000637578 PEX11BO96011 259 aa19.44■□□□□ 0.7
CLN3-260ENST00000637578 ITGAVP06756 1048 aa19.44■□□□□ 0.7
CLN3-260ENST00000637578 SRLQ86TD4 932 aa19.44■□□□□ 0.7
CLN3-260ENST00000637578 DCP2Q8IU60 420 aaKnown RBP19.44■□□□□ 0.7
CLN3-260ENST00000637578 SLC22A18ASQ8N1D0 253 aa19.44■□□□□ 0.7
CLN3-260ENST00000637578 SLC35G2Q8TBE7 412 aa19.44■□□□□ 0.7
CLN3-260ENST00000637578 RFFLQ8WZ73 363 aa19.44■□□□□ 0.7
CLN3-260ENST00000637578 CENPTQ96BT3 561 aa19.44■□□□□ 0.7
CLN3-260ENST00000637578 PSKH2Q96QS6 385 aa19.44■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms