RNA–Protein interactions for RNA: ENST00000622668.4

HDAC9-229, Transcript of histone deacetylase 9, humanhuman

TSL 2 BASIC

Gene HDAC9, Length 4,279 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-229ENST00000622668 PTPRNQ16849 979 aa9.17□□□□□ -0.94
HDAC9-229ENST00000622668 AGAP9Q5VTM2 703 aa9.17□□□□□ -0.94
HDAC9-229ENST00000622668 POLNQ7Z5Q5 900 aa9.17□□□□□ -0.94
HDAC9-229ENST00000622668 MAGEC3Q8TD91 643 aa9.17□□□□□ -0.94
HDAC9-229ENST00000622668 JADE3Q92613 823 aa9.17□□□□□ -0.94
HDAC9-229ENST00000622668 HAPLN2Q9GZV7 340 aa9.17□□□□□ -0.94
HDAC9-229ENST00000622668 ISCUQ9H1K1 167 aa9.17□□□□□ -0.94
HDAC9-229ENST00000622668 SUV39H2Q9H5I1 410 aa9.17□□□□□ -0.94
HDAC9-229ENST00000622668 FAM96AQ9H5X1 160 aa9.17□□□□□ -0.94
HDAC9-229ENST00000622668 CYP4F12Q9HCS2 524 aa9.17□□□□□ -0.94
HDAC9-229ENST00000622668 HS3ST4Q9Y661 456 aa9.17□□□□□ -0.94
HDAC9-229ENST00000622668 TAF1LQ8IZX4 1826 aa9.16□□□□□ -0.94
HDAC9-229ENST00000622668 ILVBLA1L0T0 632 aa9.16□□□□□ -0.94
HDAC9-229ENST00000622668 TMEM189-UBE2V1I3L0A0 370 aa9.16□□□□□ -0.94
HDAC9-229ENST00000622668 EBAG9O00559 213 aa9.16□□□□□ -0.94
HDAC9-229ENST00000622668 STC2O76061 302 aa9.16□□□□□ -0.94
HDAC9-229ENST00000622668 SNRPAP09012 282 aaKnown RBP9.16□□□□□ -0.94
HDAC9-229ENST00000622668 PCNAP12004 261 aa9.16□□□□□ -0.94
HDAC9-229ENST00000622668 DRD1P21728 446 aa9.16□□□□□ -0.94
HDAC9-229ENST00000622668 ACVRL1P37023 503 aa9.16□□□□□ -0.94
HDAC9-229ENST00000622668 HNF4AP41235 474 aa9.16□□□□□ -0.94
HDAC9-229ENST00000622668 ABCG1P45844 678 aa9.16□□□□□ -0.94
HDAC9-229ENST00000622668 NPY2RP49146 381 aa9.16□□□□□ -0.94
HDAC9-229ENST00000622668 MGAT3Q09327 533 aa9.16□□□□□ -0.94
HDAC9-229ENST00000622668 SMAD4Q13485 552 aaKnown RBP9.16□□□□□ -0.94
HDAC9-229ENST00000622668 DGKKQ5KSL6 1271 aa9.16□□□□□ -0.94
HDAC9-229ENST00000622668 RASIP1Q5U651 963 aa9.16□□□□□ -0.94
HDAC9-229ENST00000622668 GDPD4Q6W3E5 623 aa9.16□□□□□ -0.94
HDAC9-229ENST00000622668 BBS12Q6ZW61 710 aa9.16□□□□□ -0.94
HDAC9-229ENST00000622668 ZNF598Q86UK7 904 aaKnown RBP9.16□□□□□ -0.94
HDAC9-229ENST00000622668 KBTBD6Q86V97 674 aa9.16□□□□□ -0.94
HDAC9-229ENST00000622668 OR4K2Q8NGD2 314 aa9.16□□□□□ -0.94
HDAC9-229ENST00000622668 OSCP1Q8WVF1 389 aa9.16□□□□□ -0.94
HDAC9-229ENST00000622668 HAPLN3Q96S86 360 aa9.16□□□□□ -0.94
HDAC9-229ENST00000622668 ETNK1Q9HBU6 452 aa9.16□□□□□ -0.94
HDAC9-229ENST00000622668 IL36AQ9UHA7 158 aa9.16□□□□□ -0.94
HDAC9-229ENST00000622668 SLCO3A1Q9UIG8 710 aa9.16□□□□□ -0.94
HDAC9-229ENST00000622668 MAFFQ9ULX9 164 aa9.16□□□□□ -0.94
HDAC9-229ENST00000622668 SORCS3Q9UPU3 1222 aa9.16□□□□□ -0.94
HDAC9-229ENST00000622668 COL5A3P25940 1745 aaPredicted RBP9.16□□□□□ -0.94
HDAC9-229ENST00000622668 MAGEB16A2A368 324 aa9.16□□□□□ -0.94
HDAC9-229ENST00000622668 INSIG1O15503 277 aa9.16□□□□□ -0.94
HDAC9-229ENST00000622668 DIAPH2O60879 1101 aa9.16□□□□□ -0.94
HDAC9-229ENST00000622668 CIB2O75838 187 aa9.16□□□□□ -0.94
HDAC9-229ENST00000622668 SEC31AO94979 1220 aaKnown RBP9.16□□□□□ -0.94
HDAC9-229ENST00000622668 HOXD8P13378 290 aaPredicted RBP9.16□□□□□ -0.94
HDAC9-229ENST00000622668 PROZP22891 400 aa9.16□□□□□ -0.94
HDAC9-229ENST00000622668 STK19P49842 368 aaPredicted RBP9.16□□□□□ -0.94
HDAC9-229ENST00000622668 CRY1Q16526 586 aa9.16□□□□□ -0.94
HDAC9-229ENST00000622668 MS4A13Q5J8X5 152 aa9.16□□□□□ -0.94
HDAC9-229ENST00000622668 FAM78AQ5JUQ0 283 aa9.16□□□□□ -0.94
HDAC9-229ENST00000622668 C6orf10Q5SRN2 563 aa9.16□□□□□ -0.94
HDAC9-229ENST00000622668 PRAMEF14Q5SWL7 426 aa9.16□□□□□ -0.94
HDAC9-229ENST00000622668 FAM47EQ6ZV65 393 aa9.16□□□□□ -0.94
HDAC9-229ENST00000622668 SETD3Q86TU7 594 aaPredicted RBP9.16□□□□□ -0.94
HDAC9-229ENST00000622668 KCNMB4Q86W47 210 aa9.16□□□□□ -0.94
HDAC9-229ENST00000622668 C4orf33Q8N1A6 199 aa9.16□□□□□ -0.94
HDAC9-229ENST00000622668 SHKBP1Q8TBC3 707 aa9.16□□□□□ -0.94
HDAC9-229ENST00000622668 SLC39A8Q9C0K1 460 aa9.16□□□□□ -0.94
HDAC9-229ENST00000622668 WDR26Q9H7D7 661 aa9.16□□□□□ -0.94
HDAC9-229ENST00000622668 ARL15Q9NXU5 204 aa9.16□□□□□ -0.94
HDAC9-229ENST00000622668 PSMD13Q9UNM6 376 aa9.16□□□□□ -0.94
HDAC9-229ENST00000622668 CABIN1Q9Y6J0 2220 aa9.16□□□□□ -0.94
HDAC9-229ENST00000622668 TRIM49D1C9J1S8 452 aa9.16□□□□□ -0.94
HDAC9-229ENST00000622668 CTIFO43310 598 aaKnown RBP9.16□□□□□ -0.94
HDAC9-229ENST00000622668 MMP20O60882 483 aa9.16□□□□□ -0.94
HDAC9-229ENST00000622668 NDST3O95803 873 aa9.16□□□□□ -0.94
HDAC9-229ENST00000622668 LAMP2P13473 410 aa9.16□□□□□ -0.94
HDAC9-229ENST00000622668 SKP1P63208 163 aa9.16□□□□□ -0.94
HDAC9-229ENST00000622668 FAM189BP81408 668 aa9.16□□□□□ -0.94
HDAC9-229ENST00000622668 TGM3Q08188 693 aa9.16□□□□□ -0.94
HDAC9-229ENST00000622668 DSC1Q08554 894 aa9.16□□□□□ -0.94
HDAC9-229ENST00000622668 DMC1Q14565 340 aa9.16□□□□□ -0.94
HDAC9-229ENST00000622668 EIF4HQ15056 248 aaKnown RBP9.16□□□□□ -0.94
HDAC9-229ENST00000622668 TEX44Q53QW1 395 aa9.16□□□□□ -0.94
HDAC9-229ENST00000622668 IRGCQ6NXR0 463 aa9.16□□□□□ -0.94
HDAC9-229ENST00000622668 FBXO38Q6PIJ6 1188 aa9.16□□□□□ -0.94
HDAC9-229ENST00000622668 RHBDF2Q6PJF5 856 aa9.16□□□□□ -0.94
HDAC9-229ENST00000622668 SLC30A9Q6PML9 568 aa9.16□□□□□ -0.94
HDAC9-229ENST00000622668 MON1BQ7L1V2 547 aa9.16□□□□□ -0.94
HDAC9-229ENST00000622668 GPRIN1Q7Z2K8 1008 aa9.16□□□□□ -0.94
HDAC9-229ENST00000622668 PCDH20Q8N6Y1 951 aaKnown RBP9.16□□□□□ -0.94
HDAC9-229ENST00000622668 TSEN2Q8NCE0 465 aaKnown RBP9.16□□□□□ -0.94
HDAC9-229ENST00000622668 VN1R2Q8NFZ6 395 aa9.16□□□□□ -0.94
HDAC9-229ENST00000622668 TEKT4Q8WW24 435 aa9.16□□□□□ -0.94
HDAC9-229ENST00000622668 CLIP3Q96DZ5 547 aa9.16□□□□□ -0.94
HDAC9-229ENST00000622668 SLC2A4RGQ9NR83 387 aa9.16□□□□□ -0.94
HDAC9-229ENST00000622668 TXLNGQ9NUQ3 528 aa9.16□□□□□ -0.94
HDAC9-229ENST00000622668 CTNNAL1Q9UBT7 734 aa9.16□□□□□ -0.94
HDAC9-229ENST00000622668 GOLGA8QA0A0J9YX86 632 aa9.15□□□□□ -0.94
HDAC9-229ENST00000622668 GOLGA8OA6NCC3 632 aa9.15□□□□□ -0.94
HDAC9-229ENST00000622668 GOLGA8NF8WBI6 632 aa9.15□□□□□ -0.94
HDAC9-229ENST00000622668 CNTN5O94779 1100 aa9.15□□□□□ -0.94
HDAC9-229ENST00000622668 FTH1P02794 183 aa9.15□□□□□ -0.94
HDAC9-229ENST00000622668 DCNP07585 359 aaKnown RBP9.15□□□□□ -0.94
HDAC9-229ENST00000622668 DDX5P17844 614 aaKnown RBP9.15□□□□□ -0.94
HDAC9-229ENST00000622668 CDH3P22223 829 aa9.15□□□□□ -0.94
HDAC9-229ENST00000622668 MC4RP32245 332 aa9.15□□□□□ -0.94
HDAC9-229ENST00000622668 DUSP6Q16828 381 aa9.15□□□□□ -0.94
HDAC9-229ENST00000622668 PHF19Q5T6S3 580 aa9.15□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 58.3 ms