RNA–Protein interactions for RNA: ENST00000616154.1

CDX1-202, Transcript of caudal type homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CDX1, Length 1,343 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-202ENST00000616154 GKP32189 559 aa19.23■□□□□ 0.67
CDX1-202ENST00000616154 DUSP3P51452 185 aaPredicted RBP19.23■□□□□ 0.67
CDX1-202ENST00000616154 AIF1P55008 147 aa19.23■□□□□ 0.67
CDX1-202ENST00000616154 RPL7AP62424 266 aaKnown RBP19.23■□□□□ 0.67
CDX1-202ENST00000616154 SGCGQ13326 291 aa19.23■□□□□ 0.67
CDX1-202ENST00000616154 POLD3Q15054 466 aaPredicted RBP19.23■□□□□ 0.67
CDX1-202ENST00000616154 FAM72AQ5TYM5 149 aa19.23■□□□□ 0.67
CDX1-202ENST00000616154 FAM72DQ6L9T8 149 aa19.23■□□□□ 0.67
CDX1-202ENST00000616154 FAM72BQ86X60 149 aa19.23■□□□□ 0.67
CDX1-202ENST00000616154 VSTM4Q8IW00 320 aa19.23■□□□□ 0.67
CDX1-202ENST00000616154 RYBPQ8N488 228 aaPredicted RBP19.23■□□□□ 0.67
CDX1-202ENST00000616154 CCDC185Q8N715 623 aa19.23■□□□□ 0.67
CDX1-202ENST00000616154 OR2AP1Q8NGE2 309 aa19.23■□□□□ 0.67
CDX1-202ENST00000616154 OR6K2Q8NGY2 324 aa19.23■□□□□ 0.67
CDX1-202ENST00000616154 SYN2Q92777 582 aaPredicted RBP19.23■□□□□ 0.67
CDX1-202ENST00000616154 VOPP1Q96AW1 172 aa19.23■□□□□ 0.67
CDX1-202ENST00000616154 TBC1D31Q96DN5 1066 aa19.23■□□□□ 0.67
CDX1-202ENST00000616154 IQCDQ96DY2 449 aa19.23■□□□□ 0.67
CDX1-202ENST00000616154 MCEEQ96PE7 176 aa19.23■□□□□ 0.67
CDX1-202ENST00000616154 DEPDC7Q96QD5 511 aa19.23■□□□□ 0.67
CDX1-202ENST00000616154 DNAI1Q9UI46 699 aa19.23■□□□□ 0.67
CDX1-202ENST00000616154 RAI2Q9Y5P3 530 aa19.23■□□□□ 0.67
CDX1-202ENST00000616154 CSNK1G3Q9Y6M4 447 aa19.23■□□□□ 0.67
CDX1-202ENST00000616154 HELZ2Q9BYK8 2649 aaKnown RBP19.22■□□□□ 0.67
CDX1-202ENST00000616154 IGLON5A6NGN9 336 aa19.22■□□□□ 0.67
CDX1-202ENST00000616154 DDX3XO00571 662 aaKnown RBP eCLIP19.22■□□□□ 0.67
CDX1-202ENST00000616154 SPINT1O43278 529 aa19.22■□□□□ 0.67
CDX1-202ENST00000616154 RAMP2O60895 175 aa19.22■□□□□ 0.67
CDX1-202ENST00000616154 NEBLO76041 1014 aa19.22■□□□□ 0.67
CDX1-202ENST00000616154 LRIG2O94898 1065 aa19.22■□□□□ 0.67
CDX1-202ENST00000616154 MYF5P13349 255 aa19.22■□□□□ 0.67
CDX1-202ENST00000616154 SNRPD1P62314 119 aaKnown RBP19.22■□□□□ 0.67
CDX1-202ENST00000616154 MAMLD1Q13495 774 aa19.22■□□□□ 0.67
CDX1-202ENST00000616154 PDE1CQ14123 709 aaPredicted RBP19.22■□□□□ 0.67
CDX1-202ENST00000616154 ZCCHC8Q6NZY4 707 aaKnown RBP19.22■□□□□ 0.67
CDX1-202ENST00000616154 ARHGEF26Q96DR7 871 aa19.22■□□□□ 0.67
CDX1-202ENST00000616154 FCRL3Q96P31 734 aaPredicted RBP19.22■□□□□ 0.67
CDX1-202ENST00000616154 OSBPL1AQ9BXW6 950 aa19.22■□□□□ 0.67
CDX1-202ENST00000616154 GGT7Q9UJ14 662 aa19.22■□□□□ 0.67
CDX1-202ENST00000616154 HPCAL4Q9UM19 191 aa19.22■□□□□ 0.67
CDX1-202ENST00000616154 KALRNO60229 2985 aa19.21■□□□□ 0.67
CDX1-202ENST00000616154 RP1P56715 2156 aa19.21■□□□□ 0.67
CDX1-202ENST00000616154 NEMP1O14524 444 aa19.21■□□□□ 0.67
CDX1-202ENST00000616154 RIOK3O14730 519 aaKnown RBP19.21■□□□□ 0.67
CDX1-202ENST00000616154 LZTS3O60299 673 aaPredicted RBP19.21■□□□□ 0.67
CDX1-202ENST00000616154 PLEKP08567 350 aaPredicted RBP19.21■□□□□ 0.67
CDX1-202ENST00000616154 PFN3P60673 137 aa19.21■□□□□ 0.67
CDX1-202ENST00000616154 OGDHQ02218 1023 aa19.21■□□□□ 0.67
CDX1-202ENST00000616154 KLHL30Q0D2K2 578 aa19.21■□□□□ 0.67
CDX1-202ENST00000616154 MYLK3Q32MK0 819 aa19.21■□□□□ 0.67
CDX1-202ENST00000616154 TPRG1LQ5T0D9 272 aa19.21■□□□□ 0.67
CDX1-202ENST00000616154 HGSNATQ68CP4 663 aa19.21■□□□□ 0.67
CDX1-202ENST00000616154 IFI44Q8TCB0 444 aa19.21■□□□□ 0.67
CDX1-202ENST00000616154 FNIP1Q8TF40 1166 aa19.21■□□□□ 0.67
CDX1-202ENST00000616154 ZNF578Q96N58 590 aaPredicted RBP19.21■□□□□ 0.67
CDX1-202ENST00000616154 MAGEB5Q9BZ81 275 aa19.21■□□□□ 0.67
CDX1-202ENST00000616154 PARVAQ9NVD7 372 aa19.21■□□□□ 0.67
CDX1-202ENST00000616154 NCKIPSDQ9NZQ3 722 aa19.21■□□□□ 0.67
CDX1-202ENST00000616154 IPO11Q9UI26 975 aaKnown RBP19.21■□□□□ 0.67
CDX1-202ENST00000616154 KLF15Q9UIH9 416 aa19.21■□□□□ 0.67
CDX1-202ENST00000616154 ITM2BQ9Y287 266 aa19.21■□□□□ 0.67
CDX1-202ENST00000616154 ANKRD62A6NC57 917 aa19.2■□□□□ 0.66
CDX1-202ENST00000616154 ZSCAN5CA6NGD5 496 aaPredicted RBP19.2■□□□□ 0.66
CDX1-202ENST00000616154 TK2O00142 265 aa19.2■□□□□ 0.66
CDX1-202ENST00000616154 KRIT1O00522 736 aa19.2■□□□□ 0.66
CDX1-202ENST00000616154 AREL1O15033 823 aa19.2■□□□□ 0.66
CDX1-202ENST00000616154 ATXN7O15265 892 aaPredicted RBP19.2■□□□□ 0.66
CDX1-202ENST00000616154 AQP9O43315 295 aa19.2■□□□□ 0.66
CDX1-202ENST00000616154 KDELR3O43731 214 aa19.2■□□□□ 0.66
CDX1-202ENST00000616154 CSO75390 466 aaKnown RBP19.2■□□□□ 0.66
CDX1-202ENST00000616154 DXOO77932 396 aaKnown RBP19.2■□□□□ 0.66
CDX1-202ENST00000616154 POP4O95707 220 aaKnown RBP19.2■□□□□ 0.66
CDX1-202ENST00000616154 UGT2B4P06133 528 aa19.2■□□□□ 0.66
CDX1-202ENST00000616154 TLE3Q04726 772 aa19.2■□□□□ 0.66
CDX1-202ENST00000616154 CCDC173Q0VFZ6 552 aa19.2■□□□□ 0.66
CDX1-202ENST00000616154 SPECC1LQ69YQ0 1117 aa19.2■□□□□ 0.66
CDX1-202ENST00000616154 SLFN11Q7Z7L1 901 aa19.2■□□□□ 0.66
CDX1-202ENST00000616154 SPACA3Q8IXA5 215 aa19.2■□□□□ 0.66
CDX1-202ENST00000616154 LSMEM2Q8N112 164 aa19.2■□□□□ 0.66
CDX1-202ENST00000616154 MAPK15Q8TD08 544 aa19.2■□□□□ 0.66
CDX1-202ENST00000616154 KLHL32Q96NJ5 620 aa19.2■□□□□ 0.66
CDX1-202ENST00000616154 ABCG4Q9H172 646 aa19.2■□□□□ 0.66
CDX1-202ENST00000616154 ISCUQ9H1K1 167 aa19.2■□□□□ 0.66
CDX1-202ENST00000616154 SALL4Q9UJQ4 1053 aa19.2■□□□□ 0.66
CDX1-202ENST00000616154 LRRK1Q38SD2 2015 aa19.19■□□□□ 0.66
CDX1-202ENST00000616154 TPP1O14773 563 aa19.19■□□□□ 0.66
CDX1-202ENST00000616154 JUNDP17535 347 aa19.19■□□□□ 0.66
CDX1-202ENST00000616154 LSSP48449 732 aa19.19■□□□□ 0.66
CDX1-202ENST00000616154 PCBP4P57723 403 aaKnown RBP19.19■□□□□ 0.66
CDX1-202ENST00000616154 GABREP78334 506 aa19.19■□□□□ 0.66
CDX1-202ENST00000616154 EIF2B5Q13144 721 aaKnown RBP19.19■□□□□ 0.66
CDX1-202ENST00000616154 TBX2Q13207 712 aaPredicted RBP19.19■□□□□ 0.66
CDX1-202ENST00000616154 DCUN1D2Q6PH85 259 aa19.19■□□□□ 0.66
CDX1-202ENST00000616154 GDPD4Q6W3E5 623 aa19.19■□□□□ 0.66
CDX1-202ENST00000616154 LEKR1Q6ZMV7 388 aa19.19■□□□□ 0.66
CDX1-202ENST00000616154 LSM14AQ8ND56 463 aaKnown RBP19.19■□□□□ 0.66
CDX1-202ENST00000616154 ZNF248Q8NDW4 579 aa19.19■□□□□ 0.66
CDX1-202ENST00000616154 BTN2A2Q8WVV5 523 aa19.19■□□□□ 0.66
CDX1-202ENST00000616154 CASKIN2Q8WXE0 1202 aa19.19■□□□□ 0.66
CDX1-202ENST00000616154 CENPTQ96BT3 561 aa19.19■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms