RNA–Protein interactions for RNA: ENST00000614678.1

CPNE3-208, Transcript of copine 3, humanhuman

TSL 1 (best)

Gene CPNE3, Length 4,201 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-208ENST00000614678 RFFLQ8WZ73 363 aa5.76□□□□□ -1.49
CPNE3-208ENST00000614678 CATSPERBQ9H7T0 1116 aa5.76□□□□□ -1.49
CPNE3-208ENST00000614678 ZNHIT6Q9NWK9 470 aaKnown RBP5.76□□□□□ -1.49
CPNE3-208ENST00000614678 OR1A2Q9Y585 309 aa5.76□□□□□ -1.49
CPNE3-208ENST00000614678 BSNQ9UPA5 3926 aa5.76□□□□□ -1.49
CPNE3-208ENST00000614678 FAM149AA5PLN7 773 aa5.76□□□□□ -1.49
CPNE3-208ENST00000614678 TRAFD1O14545 582 aaPredicted RBP5.76□□□□□ -1.49
CPNE3-208ENST00000614678 ZBTB24O43167 697 aaPredicted RBP5.76□□□□□ -1.49
CPNE3-208ENST00000614678 LATO43561 262 aa5.76□□□□□ -1.49
CPNE3-208ENST00000614678 RNASEH1O60930 286 aaKnown RBP5.76□□□□□ -1.49
CPNE3-208ENST00000614678 LCA5LO95447 670 aa5.76□□□□□ -1.49
CPNE3-208ENST00000614678 MT-CYBP00156 380 aaPredicted RBP5.76□□□□□ -1.49
CPNE3-208ENST00000614678 KRT1P04264 644 aa5.76□□□□□ -1.49
CPNE3-208ENST00000614678 HLA-DQB2P05538 268 aa5.76□□□□□ -1.49
CPNE3-208ENST00000614678 LHCGRP22888 699 aa5.76□□□□□ -1.49
CPNE3-208ENST00000614678 N4BP2L1Q5TBK1 243 aaPredicted RBP5.76□□□□□ -1.49
CPNE3-208ENST00000614678 FBXL19Q6PCT2 694 aa5.76□□□□□ -1.49
CPNE3-208ENST00000614678 ADAT2Q7Z6V5 191 aaKnown RBP5.76□□□□□ -1.49
CPNE3-208ENST00000614678 ZC3H18Q86VM9 953 aaKnown RBP5.76□□□□□ -1.49
CPNE3-208ENST00000614678 RBFAQ8N0V3 343 aa5.76□□□□□ -1.49
CPNE3-208ENST00000614678 TPCN2Q8NHX9 752 aa5.76□□□□□ -1.49
CPNE3-208ENST00000614678 FAM131CQ96AQ9 280 aa5.76□□□□□ -1.49
CPNE3-208ENST00000614678 BAG1Q99933 345 aaPredicted RBP5.76□□□□□ -1.49
CPNE3-208ENST00000614678 LGR4Q9BXB1 951 aa5.76□□□□□ -1.49
CPNE3-208ENST00000614678 SP110Q9HB58 689 aa5.76□□□□□ -1.49
CPNE3-208ENST00000614678 PCDH12Q9NPG4 1184 aa5.76□□□□□ -1.49
CPNE3-208ENST00000614678 MRPL40Q9NQ50 206 aaKnown RBP5.76□□□□□ -1.49
CPNE3-208ENST00000614678 RALYQ9UKM9 306 aaKnown RBP5.76□□□□□ -1.49
CPNE3-208ENST00000614678 PKD1L2Q7Z442 2459 aa5.76□□□□□ -1.49
CPNE3-208ENST00000614678 NPC1O15118 1278 aa5.76□□□□□ -1.49
CPNE3-208ENST00000614678 FUCA1P04066 466 aa5.76□□□□□ -1.49
CPNE3-208ENST00000614678 CA5AP35218 305 aa5.76□□□□□ -1.49
CPNE3-208ENST00000614678 DEKP35659 375 aaKnown RBP5.76□□□□□ -1.49
CPNE3-208ENST00000614678 NOVA1P51513 510 aaKnown RBP5.76□□□□□ -1.49
CPNE3-208ENST00000614678 C1orf61Q13536 156 aa5.76□□□□□ -1.49
CPNE3-208ENST00000614678 TRIM14Q14142 442 aa5.76□□□□□ -1.49
CPNE3-208ENST00000614678 LBRQ14739 615 aaKnown RBP5.76□□□□□ -1.49
CPNE3-208ENST00000614678 DUOXA1Q1HG43 343 aa5.76□□□□□ -1.49
CPNE3-208ENST00000614678 BOLA3Q53S33 107 aa5.76□□□□□ -1.49
CPNE3-208ENST00000614678 GDPD4Q6W3E5 623 aa5.76□□□□□ -1.49
CPNE3-208ENST00000614678 SPNS2Q8IVW8 549 aa5.76□□□□□ -1.49
CPNE3-208ENST00000614678 OR2T34Q8NGX1 318 aa5.76□□□□□ -1.49
CPNE3-208ENST00000614678 EID2BQ96D98 161 aa5.76□□□□□ -1.49
CPNE3-208ENST00000614678 RNF157Q96PX1 679 aa5.76□□□□□ -1.49
CPNE3-208ENST00000614678 ARFGAP3Q9NP61 516 aa5.76□□□□□ -1.49
CPNE3-208ENST00000614678 HPCAL4Q9UM19 191 aa5.76□□□□□ -1.49
CPNE3-208ENST00000614678 SLC6A14Q9UN76 642 aa5.76□□□□□ -1.49
CPNE3-208ENST00000614678 PCDHGA5Q9Y5G8 931 aa5.76□□□□□ -1.49
CPNE3-208ENST00000614678 SLC30A4O14863 429 aa5.75□□□□□ -1.49
CPNE3-208ENST00000614678 KCNK5O95279 499 aa5.75□□□□□ -1.49
CPNE3-208ENST00000614678 ADH1BP00325 375 aa5.75□□□□□ -1.49
CPNE3-208ENST00000614678 MMP2P08253 660 aa5.75□□□□□ -1.49
CPNE3-208ENST00000614678 C7P10643 843 aa5.75□□□□□ -1.49
CPNE3-208ENST00000614678 FECHP22830 423 aa5.75□□□□□ -1.49
CPNE3-208ENST00000614678 ARL4AP40617 200 aa5.75□□□□□ -1.49
CPNE3-208ENST00000614678 PARP15Q460N3 678 aa5.75□□□□□ -1.49
CPNE3-208ENST00000614678 TMEM259Q4ZIN3 620 aa5.75□□□□□ -1.49
CPNE3-208ENST00000614678 SLC36A4Q6YBV0 504 aa5.75□□□□□ -1.49
CPNE3-208ENST00000614678 USP30Q70CQ3 517 aa5.75□□□□□ -1.49
CPNE3-208ENST00000614678 DAAM2Q86T65 1068 aa5.75□□□□□ -1.49
CPNE3-208ENST00000614678 SLCO6A1Q86UG4 719 aa5.75□□□□□ -1.49
CPNE3-208ENST00000614678 PCDH20Q8N6Y1 951 aaKnown RBP5.75□□□□□ -1.49
CPNE3-208ENST00000614678 TMEM145Q8NBT3 493 aa5.75□□□□□ -1.49
CPNE3-208ENST00000614678 CCNYQ8ND76 341 aa5.75□□□□□ -1.49
CPNE3-208ENST00000614678 CADM4Q8NFZ8 388 aa5.75□□□□□ -1.49
CPNE3-208ENST00000614678 FAM71BQ8TC56 605 aa5.75□□□□□ -1.49
CPNE3-208ENST00000614678 LOXL4Q96JB6 756 aa5.75□□□□□ -1.49
CPNE3-208ENST00000614678 AGAP3Q96P47 875 aa5.75□□□□□ -1.49
CPNE3-208ENST00000614678 NUSAP1Q9BXS6 441 aaKnown RBP5.75□□□□□ -1.49
CPNE3-208ENST00000614678 TMEM9BQ9NQ34 198 aa5.75□□□□□ -1.49
CPNE3-208ENST00000614678 PIH1D1Q9NWS0 290 aaKnown RBP5.75□□□□□ -1.49
CPNE3-208ENST00000614678 TOR4AQ9NXH8 423 aa5.75□□□□□ -1.49
CPNE3-208ENST00000614678 SEPT10Q9P0V9 454 aa5.75□□□□□ -1.49
CPNE3-208ENST00000614678 UVRAGQ9P2Y5 699 aa5.75□□□□□ -1.49
CPNE3-208ENST00000614678 CHKBQ9Y259 395 aa5.75□□□□□ -1.49
CPNE3-208ENST00000614678 NCKAP1Q9Y2A7 1128 aa5.75□□□□□ -1.49
CPNE3-208ENST00000614678 PCDHB9Q9Y5E1 797 aa5.75□□□□□ -1.49
CPNE3-208ENST00000614678 ST14Q9Y5Y6 855 aa5.75□□□□□ -1.49
CPNE3-208ENST00000614678 PLXNB3Q9ULL4 1909 aa5.75□□□□□ -1.49
CPNE3-208ENST00000614678 COL12A1Q99715 3063 aa5.75□□□□□ -1.49
CPNE3-208ENST00000614678 NPIPB15A6NHN6 443 aaPredicted RBP5.75□□□□□ -1.49
CPNE3-208ENST00000614678 AURKAO14965 403 aa5.75□□□□□ -1.49
CPNE3-208ENST00000614678 AREL1O15033 823 aa5.75□□□□□ -1.49
CPNE3-208ENST00000614678 FGF10O15520 208 aaPredicted RBP5.75□□□□□ -1.49
CPNE3-208ENST00000614678 SPOPO43791 374 aa5.75□□□□□ -1.49
CPNE3-208ENST00000614678 PRLP01236 227 aa5.75□□□□□ -1.49
CPNE3-208ENST00000614678 ATXN1LP0C7T5 689 aaKnown RBP5.75□□□□□ -1.49
CPNE3-208ENST00000614678 PYGMP11217 842 aa5.75□□□□□ -1.49
CPNE3-208ENST00000614678 CR2P20023 1033 aa5.75□□□□□ -1.49
CPNE3-208ENST00000614678 CD27P26842 260 aa5.75□□□□□ -1.49
CPNE3-208ENST00000614678 GARSP41250 739 aaKnown RBP5.75□□□□□ -1.49
CPNE3-208ENST00000614678 CDKN2BP42772 138 aa5.75□□□□□ -1.49
CPNE3-208ENST00000614678 NDST2P52849 883 aa5.75□□□□□ -1.49
CPNE3-208ENST00000614678 ITKQ08881 620 aa5.75□□□□□ -1.49
CPNE3-208ENST00000614678 RALGDSQ12967 914 aa5.75□□□□□ -1.49
CPNE3-208ENST00000614678 COL9A2Q14055 689 aaPredicted RBP5.75□□□□□ -1.49
CPNE3-208ENST00000614678 PTPRCAPQ14761 206 aa5.75□□□□□ -1.49
CPNE3-208ENST00000614678 UGP2Q16851 508 aa5.75□□□□□ -1.49
CPNE3-208ENST00000614678 ZNF805Q5CZA5 627 aa5.75□□□□□ -1.49
CPNE3-208ENST00000614678 CRTC1Q6UUV9 634 aa5.75□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 56.6 ms