RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 HOXB6P17509 224 aaKnown RBP4.71□□□□□ -1.66
LINC00540-201ENST00000611481 SLC6A2P23975 617 aa4.71□□□□□ -1.66
LINC00540-201ENST00000611481 ACTN2P35609 894 aa4.71□□□□□ -1.66
LINC00540-201ENST00000611481 HSD17B4P51659 736 aa4.71□□□□□ -1.66
LINC00540-201ENST00000611481 GEMIN4P57678 1058 aaKnown RBP4.71□□□□□ -1.66
LINC00540-201ENST00000611481 MRPS9P82933 396 aaKnown RBP4.71□□□□□ -1.66
LINC00540-201ENST00000611481 ZNF543Q08ER8 600 aa4.71□□□□□ -1.66
LINC00540-201ENST00000611481 MYO1EQ12965 1108 aa4.71□□□□□ -1.66
LINC00540-201ENST00000611481 GALEQ14376 348 aa4.71□□□□□ -1.66
LINC00540-201ENST00000611481 PCBP2Q15366 365 aaKnown RBP eCLIP4.71□□□□□ -1.66
LINC00540-201ENST00000611481 ATP13A4Q4VNC1 1196 aa4.71□□□□□ -1.66
LINC00540-201ENST00000611481 HYIQ5T013 277 aa4.71□□□□□ -1.66
LINC00540-201ENST00000611481 KIAA0895LQ68EN5 471 aa4.71□□□□□ -1.66
LINC00540-201ENST00000611481 Q6ZVL8 140 aa4.71□□□□□ -1.66
LINC00540-201ENST00000611481 SYT13Q7L8C5 426 aa4.71□□□□□ -1.66
LINC00540-201ENST00000611481 CHST15Q7LFX5 561 aaPredicted RBP4.71□□□□□ -1.66
LINC00540-201ENST00000611481 SRLQ86TD4 932 aa4.71□□□□□ -1.66
LINC00540-201ENST00000611481 AACSQ86V21 672 aa4.71□□□□□ -1.66
LINC00540-201ENST00000611481 TMPRSS12Q86WS5 348 aa4.71□□□□□ -1.66
LINC00540-201ENST00000611481 ERICH1Q86X53 443 aa4.71□□□□□ -1.66
LINC00540-201ENST00000611481 RNF168Q8IYW5 571 aaPredicted RBP4.71□□□□□ -1.66
LINC00540-201ENST00000611481 DEFB119Q8N690 84 aa4.71□□□□□ -1.66
LINC00540-201ENST00000611481 FRMD1Q8N878 549 aa4.71□□□□□ -1.66
LINC00540-201ENST00000611481 PDPRQ8NCN5 879 aa4.71□□□□□ -1.66
LINC00540-201ENST00000611481 RPLP0P6Q8NHW5 317 aa4.71□□□□□ -1.66
LINC00540-201ENST00000611481 RSPH1Q8WYR4 309 aa4.71□□□□□ -1.66
LINC00540-201ENST00000611481 DPF1Q92782 380 aa4.71□□□□□ -1.66
LINC00540-201ENST00000611481 SKA1Q96BD8 255 aa4.71□□□□□ -1.66
LINC00540-201ENST00000611481 AHCYL2Q96HN2 611 aaKnown RBP4.71□□□□□ -1.66
LINC00540-201ENST00000611481 RAX2Q96IS3 184 aa4.71□□□□□ -1.66
LINC00540-201ENST00000611481 FAXDC2Q96IV6 333 aa4.71□□□□□ -1.66
LINC00540-201ENST00000611481 ZFYVE19Q96K21 471 aa4.71□□□□□ -1.66
LINC00540-201ENST00000611481 ZNF668Q96K58 619 aaPredicted RBP4.71□□□□□ -1.66
LINC00540-201ENST00000611481 INPP4AQ96PE3 977 aaPredicted RBP4.71□□□□□ -1.66
LINC00540-201ENST00000611481 FNBP1Q96RU3 617 aa4.71□□□□□ -1.66
LINC00540-201ENST00000611481 PCYT2Q99447 389 aa4.71□□□□□ -1.66
LINC00540-201ENST00000611481 AZI2Q9H6S1 392 aa4.71□□□□□ -1.66
LINC00540-201ENST00000611481 EMC7Q9NPA0 242 aa4.71□□□□□ -1.66
LINC00540-201ENST00000611481 STARD5Q9NSY2 213 aa4.71□□□□□ -1.66
LINC00540-201ENST00000611481 MRFAP1Q9Y605 127 aa4.71□□□□□ -1.66
LINC00540-201ENST00000611481 OTOGQ6ZRI0 2925 aa4.7□□□□□ -1.66
LINC00540-201ENST00000611481 SPENQ96T58 3664 aaKnown RBP4.7□□□□□ -1.66
LINC00540-201ENST00000611481 A1L4Q6 167 aa4.7□□□□□ -1.66
LINC00540-201ENST00000611481 RNASEH2AO75792 299 aaKnown RBP4.7□□□□□ -1.66
LINC00540-201ENST00000611481 LUC7L3O95232 432 aaKnown RBP4.7□□□□□ -1.66
LINC00540-201ENST00000611481 MT-CO1P00395 513 aa4.7□□□□□ -1.66
LINC00540-201ENST00000611481 PRKCGP05129 697 aa4.7□□□□□ -1.66
LINC00540-201ENST00000611481 GNAI3P08754 354 aa4.7□□□□□ -1.66
LINC00540-201ENST00000611481 POU2F2P09086 479 aa4.7□□□□□ -1.66
LINC00540-201ENST00000611481 HOXD12P35452 270 aa4.7□□□□□ -1.66
LINC00540-201ENST00000611481 SREBF1P36956 1147 aa4.7□□□□□ -1.66
LINC00540-201ENST00000611481 RENBPP51606 427 aa4.7□□□□□ -1.66
LINC00540-201ENST00000611481 PER3P56645 1201 aa4.7□□□□□ -1.66
LINC00540-201ENST00000611481 CREMQ03060 361 aa4.7□□□□□ -1.66
LINC00540-201ENST00000611481 MYBPC2Q14324 1141 aa4.7□□□□□ -1.66
LINC00540-201ENST00000611481 GEN1Q17RS7 908 aa4.7□□□□□ -1.66
LINC00540-201ENST00000611481 QRICH1Q2TAL8 776 aa4.7□□□□□ -1.66
LINC00540-201ENST00000611481 USP41Q3LFD5 358 aa4.7□□□□□ -1.66
LINC00540-201ENST00000611481 TBC1D25Q3MII6 688 aa4.7□□□□□ -1.66
LINC00540-201ENST00000611481 TMEM196Q5HYL7 178 aa4.7□□□□□ -1.66
LINC00540-201ENST00000611481 KAZNQ674X7 775 aa4.7□□□□□ -1.66
LINC00540-201ENST00000611481 TWF2Q6IBS0 349 aaKnown RBP4.7□□□□□ -1.66
LINC00540-201ENST00000611481 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.7□□□□□ -1.66
LINC00540-201ENST00000611481 ZNF529Q6P280 563 aa4.7□□□□□ -1.66
LINC00540-201ENST00000611481 SRGAP1Q7Z6B7 1085 aa4.7□□□□□ -1.66
LINC00540-201ENST00000611481 CATIPQ7Z7H3 387 aa4.7□□□□□ -1.66
LINC00540-201ENST00000611481 MYLK4Q86YV6 388 aaPredicted RBP4.7□□□□□ -1.66
LINC00540-201ENST00000611481 WDR63Q8IWG1 891 aa4.7□□□□□ -1.66
LINC00540-201ENST00000611481 MMP21Q8N119 569 aa4.7□□□□□ -1.66
LINC00540-201ENST00000611481 NKAPQ8N5F7 415 aaKnown RBP4.7□□□□□ -1.66
LINC00540-201ENST00000611481 METTL13Q8N6R0 699 aa4.7□□□□□ -1.66
LINC00540-201ENST00000611481 ZNF248Q8NDW4 579 aa4.7□□□□□ -1.66
LINC00540-201ENST00000611481 C1orf162Q8NEQ5 155 aaPredicted RBP4.7□□□□□ -1.66
LINC00540-201ENST00000611481 PARD3BQ8TEW8 1205 aa4.7□□□□□ -1.66
LINC00540-201ENST00000611481 SSH1Q8WYL5 1049 aa4.7□□□□□ -1.66
LINC00540-201ENST00000611481 RSPRY1Q96DX4 576 aa4.7□□□□□ -1.66
LINC00540-201ENST00000611481 MOCOSQ96EN8 888 aa4.7□□□□□ -1.66
LINC00540-201ENST00000611481 HIC2Q96JB3 615 aa4.7□□□□□ -1.66
LINC00540-201ENST00000611481 LRGUKQ96M69 825 aa4.7□□□□□ -1.66
LINC00540-201ENST00000611481 MED15Q96RN5 788 aa4.7□□□□□ -1.66
LINC00540-201ENST00000611481 PNKPQ96T60 521 aa4.7□□□□□ -1.66
LINC00540-201ENST00000611481 TMEM47Q9BQJ4 181 aa4.7□□□□□ -1.66
LINC00540-201ENST00000611481 NAA15Q9BXJ9 866 aaKnown RBP4.7□□□□□ -1.66
LINC00540-201ENST00000611481 DDX24Q9GZR7 859 aaKnown RBP eCLIP4.7□□□□□ -1.66
LINC00540-201ENST00000611481 DGKBQ9Y6T7 804 aa4.7□□□□□ -1.66
LINC00540-201ENST00000611481 MED13LQ71F56 2210 aa4.7□□□□□ -1.66
LINC00540-201ENST00000611481 EVPLQ92817 2033 aa4.7□□□□□ -1.66
LINC00540-201ENST00000611481 HELZP42694 1942 aaKnown RBP4.7□□□□□ -1.66
LINC00540-201ENST00000611481 F5H423 210 aaPredicted RBP4.69□□□□□ -1.66
LINC00540-201ENST00000611481 MPPED1O15442 326 aa4.69□□□□□ -1.66
LINC00540-201ENST00000611481 ADAM12O43184 909 aa4.69□□□□□ -1.66
LINC00540-201ENST00000611481 KLK10O43240 276 aa4.69□□□□□ -1.66
LINC00540-201ENST00000611481 DHX16O60231 1041 aaKnown RBP4.69□□□□□ -1.66
LINC00540-201ENST00000611481 RANBP6O60518 1105 aaKnown RBP4.69□□□□□ -1.66
LINC00540-201ENST00000611481 IL33O95760 270 aa4.69□□□□□ -1.66
LINC00540-201ENST00000611481 SLC3A2P08195 630 aaKnown RBP4.69□□□□□ -1.66
LINC00540-201ENST00000611481 TOP1P11387 765 aaKnown RBP4.69□□□□□ -1.66
LINC00540-201ENST00000611481 GJA1P17302 382 aa4.69□□□□□ -1.66
LINC00540-201ENST00000611481 PTPN2P17706 415 aa4.69□□□□□ -1.66
LINC00540-201ENST00000611481 AKAP5P24588 427 aa4.69□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms