RNA–Protein interactions for RNA: ENST00000601912.5

VRK3-225, Transcript of vaccinia related kinase 3, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene VRK3, Length 1,668 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-225ENST00000601912 VPS18Q9P253 973 aa18.18■□□□□ 0.5
VRK3-225ENST00000601912 DEC1Q9P2X7 70 aa18.18■□□□□ 0.5
VRK3-225ENST00000601912 USP15Q9Y4E8 981 aaPredicted RBP18.18■□□□□ 0.5
VRK3-225ENST00000601912 IKBKGQ9Y6K9 419 aa18.18■□□□□ 0.5
VRK3-225ENST00000601912 MIA3Q5JRA6 1907 aa18.17■□□□□ 0.5
VRK3-225ENST00000601912 ALDH1A2O94788 518 aa18.17■□□□□ 0.5
VRK3-225ENST00000601912 ATP5BP06576 529 aaKnown RBP18.17■□□□□ 0.5
VRK3-225ENST00000601912 ATXN1LP0C7T5 689 aaKnown RBP18.17■□□□□ 0.5
VRK3-225ENST00000601912 MSH2P43246 934 aa18.17■□□□□ 0.5
VRK3-225ENST00000601912 RUNX3Q13761 415 aa18.17■□□□□ 0.5
VRK3-225ENST00000601912 GEN1Q17RS7 908 aa18.17■□□□□ 0.5
VRK3-225ENST00000601912 SKIDA1Q1XH10 827 aa18.17■□□□□ 0.5
VRK3-225ENST00000601912 KBTBD12Q3ZCT8 623 aa18.17■□□□□ 0.5
VRK3-225ENST00000601912 ACCSLQ4AC99 568 aa18.17■□□□□ 0.5
VRK3-225ENST00000601912 ANKRD20A4Q4UJ75 823 aa18.17■□□□□ 0.5
VRK3-225ENST00000601912 ATXN7L2Q5T6C5 722 aaPredicted RBP18.17■□□□□ 0.5
VRK3-225ENST00000601912 KCTD16Q68DU8 428 aa18.17■□□□□ 0.5
VRK3-225ENST00000601912 PKN3Q6P5Z2 889 aa18.17■□□□□ 0.5
VRK3-225ENST00000601912 ETFBKMTQ8IXQ9 262 aa18.17■□□□□ 0.5
VRK3-225ENST00000601912 SERBP1Q8NC51 408 aaKnown RBP eCLIP18.17■□□□□ 0.5
VRK3-225ENST00000601912 CDKL2Q92772 493 aa18.17■□□□□ 0.5
VRK3-225ENST00000601912 ZNF669Q96BR6 464 aaPredicted RBP18.17■□□□□ 0.5
VRK3-225ENST00000601912 TRIM56Q9BRZ2 755 aaKnown RBP18.17■□□□□ 0.5
VRK3-225ENST00000601912 TRMT61BQ9BVS5 477 aaKnown RBP18.17■□□□□ 0.5
VRK3-225ENST00000601912 TDRD1Q9BXT4 1180 aaKnown RBP18.17■□□□□ 0.5
VRK3-225ENST00000601912 ADGRE3Q9BY15 652 aa18.17■□□□□ 0.5
VRK3-225ENST00000601912 PLA2G2FQ9BZM2 168 aa18.17■□□□□ 0.5
VRK3-225ENST00000601912 PLAC1Q9HBJ0 212 aa18.17■□□□□ 0.5
VRK3-225ENST00000601912 MRM3Q9HC36 420 aaKnown RBP18.17■□□□□ 0.5
VRK3-225ENST00000601912 PPANQ9NQ55 473 aaKnown RBP18.17■□□□□ 0.5
VRK3-225ENST00000601912 HPS4Q9NQG7 708 aa18.17■□□□□ 0.5
VRK3-225ENST00000601912 CHRAC1Q9NRG0 131 aa18.17■□□□□ 0.5
VRK3-225ENST00000601912 MOCS1Q9NZB8 636 aa18.17■□□□□ 0.5
VRK3-225ENST00000601912 SLC8A2Q9UPR5 921 aa18.17■□□□□ 0.5
VRK3-225ENST00000601912 RAI2Q9Y5P3 530 aa18.17■□□□□ 0.5
VRK3-225ENST00000601912 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP18.16■□□□□ 0.5
VRK3-225ENST00000601912 HEATR9A2RTY3 570 aa18.16■□□□□ 0.5
VRK3-225ENST00000601912 TRIM24O15164 1050 aa18.16■□□□□ 0.5
VRK3-225ENST00000601912 ASLP04424 464 aa18.16■□□□□ 0.5
VRK3-225ENST00000601912 ALADP13716 330 aa18.16■□□□□ 0.5
VRK3-225ENST00000601912 STK19P49842 368 aaPredicted RBP18.16■□□□□ 0.5
VRK3-225ENST00000601912 LAMB3Q13751 1172 aa18.16■□□□□ 0.5
VRK3-225ENST00000601912 RASA2Q15283 850 aa18.16■□□□□ 0.5
VRK3-225ENST00000601912 GRAMD4Q6IC98 578 aa18.16■□□□□ 0.5
VRK3-225ENST00000601912 ZNF449Q6P9G9 518 aa18.16■□□□□ 0.5
VRK3-225ENST00000601912 CTAGE3PQ8IX95 158 aa18.16■□□□□ 0.5
VRK3-225ENST00000601912 PCDH20Q8N6Y1 951 aaKnown RBP18.16■□□□□ 0.5
VRK3-225ENST00000601912 OR2AP1Q8NGE2 309 aa18.16■□□□□ 0.5
VRK3-225ENST00000601912 SUSD6Q92537 303 aa18.16■□□□□ 0.5
VRK3-225ENST00000601912 FGF14Q92915 247 aa18.16■□□□□ 0.5
VRK3-225ENST00000601912 RMDN1Q96DB5 314 aa18.16■□□□□ 0.5
VRK3-225ENST00000601912 TRIB3Q96RU7 358 aa18.16■□□□□ 0.5
VRK3-225ENST00000601912 RANBP9Q96S59 729 aa18.16■□□□□ 0.5
VRK3-225ENST00000601912 CIPCQ9C0C6 399 aa18.16■□□□□ 0.5
VRK3-225ENST00000601912 PSMC3IPQ9P2W1 217 aaPredicted RBP18.16■□□□□ 0.5
VRK3-225ENST00000601912 EPS15L1Q9UBC2 864 aa18.16■□□□□ 0.5
VRK3-225ENST00000601912 NOVA2Q9UNW9 492 aaKnown RBP18.16■□□□□ 0.5
VRK3-225ENST00000601912 ERVW-1Q9UQF0 538 aa18.16■□□□□ 0.5
VRK3-225ENST00000601912 CHKBQ9Y259 395 aa18.16■□□□□ 0.5
VRK3-225ENST00000601912 TCAF1Q9Y4C2 921 aa18.16■□□□□ 0.5
VRK3-225ENST00000601912 PCDHGC4Q9Y5F7 938 aa18.16■□□□□ 0.5
VRK3-225ENST00000601912 FAM169AQ9Y6X4 670 aa18.16■□□□□ 0.5
VRK3-225ENST00000601912 OTOL1A6NHN0 477 aaPredicted RBP18.15■□□□□ 0.5
VRK3-225ENST00000601912 SOX1O00570 391 aaPredicted RBP18.15■□□□□ 0.5
VRK3-225ENST00000601912 GDI1P31150 447 aa18.15■□□□□ 0.5
VRK3-225ENST00000601912 SEPT6Q14141 434 aa18.15■□□□□ 0.5
VRK3-225ENST00000601912 FRG1Q14331 258 aaKnown RBP18.15■□□□□ 0.5
VRK3-225ENST00000601912 DGKKQ5KSL6 1271 aa18.15■□□□□ 0.5
VRK3-225ENST00000601912 TMEM215Q68D42 235 aa18.15■□□□□ 0.5
VRK3-225ENST00000601912 C22orf39Q6P5X5 142 aa18.15■□□□□ 0.5
VRK3-225ENST00000601912 CES3Q6UWW8 571 aa18.15■□□□□ 0.5
VRK3-225ENST00000601912 C12orf40Q86WS4 652 aa18.15■□□□□ 0.5
VRK3-225ENST00000601912 LRRC6Q86X45 466 aa18.15■□□□□ 0.5
VRK3-225ENST00000601912 RYBPQ8N488 228 aaPredicted RBP18.15■□□□□ 0.5
VRK3-225ENST00000601912 MRRFQ96E11 262 aaKnown RBP18.15■□□□□ 0.5
VRK3-225ENST00000601912 PAFAH2Q99487 392 aa18.15■□□□□ 0.5
VRK3-225ENST00000601912 LGALS13Q9UHV8 139 aa18.15■□□□□ 0.5
VRK3-225ENST00000601912 FAM159BA6NKW6 160 aa18.15■□□□□ 0.5
VRK3-225ENST00000601912 H3BQ06 376 aaPredicted RBP18.15■□□□□ 0.5
VRK3-225ENST00000601912 TIMM44O43615 452 aa18.15■□□□□ 0.5
VRK3-225ENST00000601912 GSRP00390 522 aa18.15■□□□□ 0.5
VRK3-225ENST00000601912 INHBAP08476 426 aa18.15■□□□□ 0.5
VRK3-225ENST00000601912 PAMP19021 973 aa18.15■□□□□ 0.5
VRK3-225ENST00000601912 BCL2L1Q07817 233 aa18.15■□□□□ 0.5
VRK3-225ENST00000601912 GALNT3Q14435 633 aa18.15■□□□□ 0.5
VRK3-225ENST00000601912 EFTUD2Q15029 972 aaKnown RBP eCLIP18.15■□□□□ 0.53e-6■■□□□ 13.2
VRK3-225ENST00000601912 DLG2Q15700 870 aa18.15■□□□□ 0.5
VRK3-225ENST00000601912 TRMT10BQ6PF06 316 aaKnown RBP18.15■□□□□ 0.5
VRK3-225ENST00000601912 NLRP9Q7RTR0 991 aa18.15■□□□□ 0.5
VRK3-225ENST00000601912 PPM1NQ8N819 430 aa18.15■□□□□ 0.5
VRK3-225ENST00000601912 PDCD6IPQ8WUM4 868 aaKnown RBP18.15■□□□□ 0.5
VRK3-225ENST00000601912 MFSD3Q96ES6 412 aa18.15■□□□□ 0.5
VRK3-225ENST00000601912 CERS2Q96G23 380 aa18.15■□□□□ 0.5
VRK3-225ENST00000601912 FCRL3Q96P31 734 aaPredicted RBP18.15■□□□□ 0.5
VRK3-225ENST00000601912 TNKS2Q9H2K2 1166 aa18.15■□□□□ 0.5
VRK3-225ENST00000601912 PRKAG3Q9UGI9 489 aa18.15■□□□□ 0.5
VRK3-225ENST00000601912 TBK1Q9UHD2 729 aa18.15■□□□□ 0.5
VRK3-225ENST00000601912 EVLQ9UI08 416 aaPredicted RBP18.15■□□□□ 0.5
VRK3-225ENST00000601912 SLCO3A1Q9UIG8 710 aa18.15■□□□□ 0.5
VRK3-225ENST00000601912 ZNF821O75541 412 aaPredicted RBP18.14■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms