RNA–Protein interactions for RNA: ENST00000600868.5

UPF1-211, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-211ENST00000600868 RSPH9Q9H1X1 276 aaPredicted RBP14.5□□□□□ -0.09
UPF1-211ENST00000600868 SUV39H2Q9H5I1 410 aa14.5□□□□□ -0.09
UPF1-211ENST00000600868 LRRC40Q9H9A6 602 aa14.5□□□□□ -0.09
UPF1-211ENST00000600868 EIF2B3Q9NR50 452 aaKnown RBP14.5□□□□□ -0.09
UPF1-211ENST00000600868 UBP1Q9NZI7 540 aa14.5□□□□□ -0.09
UPF1-211ENST00000600868 WHRNQ9P202 907 aa14.5□□□□□ -0.09
UPF1-211ENST00000600868 DMGDHQ9UI17 866 aaKnown RBP14.5□□□□□ -0.09
UPF1-211ENST00000600868 TPX2Q9ULW0 747 aaKnown RBP14.5□□□□□ -0.09
UPF1-211ENST00000600868 ARIH1Q9Y4X5 557 aaPredicted RBP14.5□□□□□ -0.09
UPF1-211ENST00000600868 RAI2Q9Y5P3 530 aa14.5□□□□□ -0.09
UPF1-211ENST00000600868 TECTAO75443 2155 aa14.49□□□□□ -0.09
UPF1-211ENST00000600868 A0A1W2PQ67 120 aa14.49□□□□□ -0.09
UPF1-211ENST00000600868 RNASEH1O60930 286 aaKnown RBP14.49□□□□□ -0.09
UPF1-211ENST00000600868 PMPCBO75439 489 aa14.49□□□□□ -0.09
UPF1-211ENST00000600868 SUN1O94901 812 aa14.49□□□□□ -0.09
UPF1-211ENST00000600868 SEC31AO94979 1220 aaKnown RBP14.49□□□□□ -0.09
UPF1-211ENST00000600868 PDGFBP01127 241 aaPredicted RBP14.49□□□□□ -0.09
UPF1-211ENST00000600868 APRTP07741 180 aa14.49□□□□□ -0.09
UPF1-211ENST00000600868 TPSB2P20231 275 aa14.49□□□□□ -0.09
UPF1-211ENST00000600868 COL9A1P20849 921 aa14.49□□□□□ -0.09
UPF1-211ENST00000600868 RPL21P46778 160 aaKnown RBP14.49□□□□□ -0.09
UPF1-211ENST00000600868 CLCN5P51795 746 aa14.49□□□□□ -0.09
UPF1-211ENST00000600868 DGKEP52429 567 aa14.49□□□□□ -0.09
UPF1-211ENST00000600868 COPAP53621 1224 aa14.49□□□□□ -0.09
UPF1-211ENST00000600868 CDK16Q00536 496 aa14.49□□□□□ -0.09
UPF1-211ENST00000600868 TRAF2Q12933 501 aa14.49□□□□□ -0.09
UPF1-211ENST00000600868 KCNJ11Q14654 390 aa14.49□□□□□ -0.09
UPF1-211ENST00000600868 TPSAB1Q15661 275 aa14.49□□□□□ -0.09
UPF1-211ENST00000600868 TEX35Q5T0J7 233 aa14.49□□□□□ -0.09
UPF1-211ENST00000600868 TMEM92Q6UXU6 159 aa14.49□□□□□ -0.09
UPF1-211ENST00000600868 GDPD4Q6W3E5 623 aa14.49□□□□□ -0.09
UPF1-211ENST00000600868 MAMSTRQ6ZN01 415 aa14.49□□□□□ -0.09
UPF1-211ENST00000600868 CAMK1DQ8IU85 385 aa14.49□□□□□ -0.09
UPF1-211ENST00000600868 SPEM1Q8N4L4 309 aa14.49□□□□□ -0.09
UPF1-211ENST00000600868 PDCD7Q8N8D1 485 aaKnown RBP14.49□□□□□ -0.09
UPF1-211ENST00000600868 BBOF1Q8ND07 529 aa14.49□□□□□ -0.09
UPF1-211ENST00000600868 GRIN3AQ8TCU5 1115 aa14.49□□□□□ -0.09
UPF1-211ENST00000600868 CPT1BQ92523 772 aa14.49□□□□□ -0.09
UPF1-211ENST00000600868 ECHDC3Q96DC8 303 aa14.49□□□□□ -0.09
UPF1-211ENST00000600868 FEM1CQ96JP0 617 aa14.49□□□□□ -0.09
UPF1-211ENST00000600868 MRGPRX2Q96LB1 330 aa14.49□□□□□ -0.09
UPF1-211ENST00000600868 TDRD1Q9BXT4 1180 aaKnown RBP14.49□□□□□ -0.09
UPF1-211ENST00000600868 TRIM31Q9BZY9 425 aa14.49□□□□□ -0.09
UPF1-211ENST00000600868 DKK3Q9UBP4 350 aa14.49□□□□□ -0.09
UPF1-211ENST00000600868 SARDHQ9UL12 918 aa14.49□□□□□ -0.09
UPF1-211ENST00000600868 SNX24Q9Y343 169 aa14.49□□□□□ -0.09
UPF1-211ENST00000600868 PCDHGC4Q9Y5F7 938 aa14.49□□□□□ -0.09
UPF1-211ENST00000600868 LOC285095A0A1B0GVY8 99 aa14.48□□□□□ -0.09
UPF1-211ENST00000600868 TSPAN11A1L157 253 aa14.48□□□□□ -0.09
UPF1-211ENST00000600868 C1QTNF3-AMACRE9PGA6 284 aa14.48□□□□□ -0.09
UPF1-211ENST00000600868 SMAPO00193 183 aa14.48□□□□□ -0.09
UPF1-211ENST00000600868 FZD6O60353 706 aa14.48□□□□□ -0.09
UPF1-211ENST00000600868 PGLSO95336 258 aa14.48□□□□□ -0.09
UPF1-211ENST00000600868 PIGNO95427 931 aa14.48□□□□□ -0.09
UPF1-211ENST00000600868 PRLP01236 227 aa14.48□□□□□ -0.09
UPF1-211ENST00000600868 UGT2B4P06133 528 aa14.48□□□□□ -0.09
UPF1-211ENST00000600868 DCNP07585 359 aaKnown RBP14.48□□□□□ -0.09
UPF1-211ENST00000600868 AOC1P19801 751 aa14.48□□□□□ -0.09
UPF1-211ENST00000600868 ITIH2P19823 946 aa14.48□□□□□ -0.09
UPF1-211ENST00000600868 ADRA1AP35348 466 aa14.48□□□□□ -0.09
UPF1-211ENST00000600868 LMAN1P49257 510 aa14.48□□□□□ -0.09
UPF1-211ENST00000600868 RPL26P61254 145 aaKnown RBP14.48□□□□□ -0.09
UPF1-211ENST00000600868 SATB1Q01826 763 aa14.48□□□□□ -0.09
UPF1-211ENST00000600868 GUCY2DQ02846 1103 aa14.48□□□□□ -0.09
UPF1-211ENST00000600868 CDK18Q07002 472 aa14.48□□□□□ -0.09
UPF1-211ENST00000600868 MORF4L2Q15014 288 aa14.48□□□□□ -0.09
UPF1-211ENST00000600868 ZNF805Q5CZA5 627 aa14.48□□□□□ -0.09
UPF1-211ENST00000600868 ARMC12Q5T9G4 340 aa14.48□□□□□ -0.09
UPF1-211ENST00000600868 RNASEH2BQ5TBB1 312 aaKnown RBP14.48□□□□□ -0.09
UPF1-211ENST00000600868 FAM46CQ5VWP2 391 aa14.48□□□□□ -0.09
UPF1-211ENST00000600868 IZUMO3Q5VZ72 239 aa14.48□□□□□ -0.09
UPF1-211ENST00000600868 ZNF776Q68DI1 518 aaPredicted RBP14.48□□□□□ -0.09
UPF1-211ENST00000600868 RANBP10Q6VN20 620 aa14.48□□□□□ -0.09
UPF1-211ENST00000600868 LINC00523Q86TU6 105 aa14.48□□□□□ -0.09
UPF1-211ENST00000600868 HOOK3Q86VS8 718 aa14.48□□□□□ -0.09
UPF1-211ENST00000600868 MMAAQ8IVH4 418 aaKnown RBP14.48□□□□□ -0.09
UPF1-211ENST00000600868 PPIL6Q8IXY8 311 aa14.48□□□□□ -0.09
UPF1-211ENST00000600868 NAT8LQ8N9F0 302 aa14.48□□□□□ -0.09
UPF1-211ENST00000600868 IPMKQ8NFU5 416 aa14.48□□□□□ -0.09
UPF1-211ENST00000600868 PIP4K2CQ8TBX8 421 aa14.48□□□□□ -0.09
UPF1-211ENST00000600868 KLHL32Q96NJ5 620 aa14.48□□□□□ -0.09
UPF1-211ENST00000600868 TRIB3Q96RU7 358 aa14.48□□□□□ -0.09
UPF1-211ENST00000600868 FSD1LQ9BXM9 530 aa14.48□□□□□ -0.09
UPF1-211ENST00000600868 POLMQ9NP87 494 aaPredicted RBP14.48□□□□□ -0.09
UPF1-211ENST00000600868 DLGAP2Q9P1A6 1054 aa14.48□□□□□ -0.09
UPF1-211ENST00000600868 RPL26L1Q9UNX3 145 aaKnown RBP14.48□□□□□ -0.09
UPF1-211ENST00000600868 ANKRD36A6QL64 1941 aa14.48□□□□□ -0.09
UPF1-211ENST00000600868 PI15O43692 258 aa14.47□□□□□ -0.09
UPF1-211ENST00000600868 NDST3O95803 873 aa14.47□□□□□ -0.09
UPF1-211ENST00000600868 ADH1BP00325 375 aa14.47□□□□□ -0.09
UPF1-211ENST00000600868 IL1BP01584 269 aa14.47□□□□□ -0.09
UPF1-211ENST00000600868 RHOXF2BP0C7M4 288 aa14.47□□□□□ -0.09
UPF1-211ENST00000600868 HLA-DPA1P20036 260 aa14.47□□□□□ -0.09
UPF1-211ENST00000600868 C5AR1P21730 350 aa14.47□□□□□ -0.09
UPF1-211ENST00000600868 ITGB7P26010 798 aa14.47□□□□□ -0.09
UPF1-211ENST00000600868 TNNT3P45378 269 aaPredicted RBP14.47□□□□□ -0.09
UPF1-211ENST00000600868 RPS14P62263 151 aaKnown RBP14.47□□□□□ -0.09
UPF1-211ENST00000600868 CALCOCO2Q13137 446 aa14.47□□□□□ -0.09
UPF1-211ENST00000600868 CST6Q15828 149 aa14.47□□□□□ -0.09
UPF1-211ENST00000600868 PCSK7Q16549 785 aa14.47□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms