RNA–Protein interactions for RNA: ENST00000599833.1

SHKBP1-221, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 761 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-221ENST00000599833 GPR161Q8N6U8 529 aaKnown RBP19.72■□□□□ 0.75
SHKBP1-221ENST00000599833 TMEM131Q92545 1883 aa19.72■□□□□ 0.75
SHKBP1-221ENST00000599833 PPP1R16AQ96I34 528 aa19.72■□□□□ 0.75
SHKBP1-221ENST00000599833 RBM41Q96IZ5 413 aaKnown RBP19.72■□□□□ 0.75
SHKBP1-221ENST00000599833 NUDCD1Q96RS6 583 aa19.72■□□□□ 0.75
SHKBP1-221ENST00000599833 TUBGCP5Q96RT8 1024 aa19.72■□□□□ 0.75
SHKBP1-221ENST00000599833 IL12RB2Q99665 862 aa19.72■□□□□ 0.75
SHKBP1-221ENST00000599833 TSGA10Q9BZW7 698 aa19.72■□□□□ 0.75
SHKBP1-221ENST00000599833 SUV39H2Q9H5I1 410 aa19.72■□□□□ 0.75
SHKBP1-221ENST00000599833 ITM2BQ9Y287 266 aa19.72■□□□□ 0.75
SHKBP1-221ENST00000599833 ATP8A1Q9Y2Q0 1164 aa19.72■□□□□ 0.75
SHKBP1-221ENST00000599833 HLA-DQB2P05538 268 aa19.71■□□□□ 0.75
SHKBP1-221ENST00000599833 CCDC175P0C221 793 aa19.71■□□□□ 0.75
SHKBP1-221ENST00000599833 HSPA9P38646 679 aaKnown RBP19.71■□□□□ 0.75
SHKBP1-221ENST00000599833 DPP6P42658 865 aa19.71■□□□□ 0.75
SHKBP1-221ENST00000599833 RWDD2BP57060 319 aa19.71■□□□□ 0.75
SHKBP1-221ENST00000599833 COPS2P61201 443 aa19.71■□□□□ 0.75
SHKBP1-221ENST00000599833 IFI35P80217 286 aaPredicted RBP19.71■□□□□ 0.75
SHKBP1-221ENST00000599833 PRKD1Q15139 912 aaPredicted RBP19.71■□□□□ 0.75
SHKBP1-221ENST00000599833 DUOXA1Q1HG43 343 aa19.71■□□□□ 0.75
SHKBP1-221ENST00000599833 ZNF284Q2VY69 593 aa19.71■□□□□ 0.75
SHKBP1-221ENST00000599833 SYCP2LQ5T4T6 812 aa19.71■□□□□ 0.75
SHKBP1-221ENST00000599833 MARC1Q5VT66 337 aa19.71■□□□□ 0.75
SHKBP1-221ENST00000599833 TIGD7Q6NT04 549 aaPredicted RBP19.71■□□□□ 0.75
SHKBP1-221ENST00000599833 NEK5Q6P3R8 708 aa19.71■□□□□ 0.75
SHKBP1-221ENST00000599833 B4GALNT4Q76KP1 1039 aa19.71■□□□□ 0.75
SHKBP1-221ENST00000599833 CCDC13Q8IYE1 715 aa19.71■□□□□ 0.75
SHKBP1-221ENST00000599833 ARRDC2Q8TBH0 407 aa19.71■□□□□ 0.75
SHKBP1-221ENST00000599833 HCAR2Q8TDS4 363 aa19.71■□□□□ 0.75
SHKBP1-221ENST00000599833 ZNF641Q96N77 438 aaPredicted RBP19.71■□□□□ 0.75
SHKBP1-221ENST00000599833 NOD2Q9HC29 1040 aa19.71■□□□□ 0.75
SHKBP1-221ENST00000599833 TM9SF3Q9HD45 589 aa19.71■□□□□ 0.75
SHKBP1-221ENST00000599833 GUCA1BQ9UMX6 200 aa19.71■□□□□ 0.75
SHKBP1-221ENST00000599833 EFR3BQ9Y2G0 817 aa19.71■□□□□ 0.75
SHKBP1-221ENST00000599833 PPP2R2CQ9Y2T4 447 aa19.71■□□□□ 0.75
SHKBP1-221ENST00000599833 SBDSQ9Y3A5 250 aaKnown RBP eCLIP19.71■□□□□ 0.75
SHKBP1-221ENST00000599833 BPTFQ12830 3046 aa19.71■□□□□ 0.75
SHKBP1-221ENST00000599833 ASCC3Q8N3C0 2202 aaKnown RBP19.7■□□□□ 0.74
SHKBP1-221ENST00000599833 TBC1D3DA0A087WVF3 549 aa19.7■□□□□ 0.74
SHKBP1-221ENST00000599833 TBC1D3IA0A087WXS9 549 aa19.7■□□□□ 0.74
SHKBP1-221ENST00000599833 TBC1D3EA0A087X179 549 aa19.7■□□□□ 0.74
SHKBP1-221ENST00000599833 TBC1D3KA0A087X1G2 549 aa19.7■□□□□ 0.74
SHKBP1-221ENST00000599833 A0A1W2PR77 199 aa19.7■□□□□ 0.74
SHKBP1-221ENST00000599833 TBC1D3FA6NER0 549 aaPredicted RBP19.7■□□□□ 0.74
SHKBP1-221ENST00000599833 TBC1D3LB9A6J9 549 aa19.7■□□□□ 0.74
SHKBP1-221ENST00000599833 CDX4O14627 284 aaPredicted RBP19.7■□□□□ 0.74
SHKBP1-221ENST00000599833 HTRA2O43464 458 aaPredicted RBP19.7■□□□□ 0.74
SHKBP1-221ENST00000599833 MMP2P08253 660 aa19.7■□□□□ 0.74
SHKBP1-221ENST00000599833 SERPINF2P08697 491 aa19.7■□□□□ 0.74
SHKBP1-221ENST00000599833 TBC1D3HP0C7X1 549 aa19.7■□□□□ 0.74
SHKBP1-221ENST00000599833 CCNB1P14635 433 aa19.7■□□□□ 0.74
SHKBP1-221ENST00000599833 TGM2P21980 687 aa19.7■□□□□ 0.74
SHKBP1-221ENST00000599833 NR2C2P49116 596 aa19.7■□□□□ 0.74
SHKBP1-221ENST00000599833 SCNN1BP51168 640 aa19.7■□□□□ 0.74
SHKBP1-221ENST00000599833 RENBPP51606 427 aa19.7■□□□□ 0.74
SHKBP1-221ENST00000599833 AP1S1P61966 158 aa19.7■□□□□ 0.74
SHKBP1-221ENST00000599833 NIPAL4Q0D2K0 466 aa19.7■□□□□ 0.74
SHKBP1-221ENST00000599833 TRAF2Q12933 501 aa19.7■□□□□ 0.74
SHKBP1-221ENST00000599833 TFDP2Q14188 446 aa19.7■□□□□ 0.74
SHKBP1-221ENST00000599833 ZNF235Q14590 738 aa19.7■□□□□ 0.74
SHKBP1-221ENST00000599833 GRM3Q14832 879 aa19.7■□□□□ 0.74
SHKBP1-221ENST00000599833 TRIM61Q5EBN2 209 aa19.7■□□□□ 0.74
SHKBP1-221ENST00000599833 LRRC73Q5JTD7 316 aa19.7■□□□□ 0.74
SHKBP1-221ENST00000599833 KAZNQ674X7 775 aa19.7■□□□□ 0.74
SHKBP1-221ENST00000599833 SEL1L3Q68CR1 1132 aa19.7■□□□□ 0.74
SHKBP1-221ENST00000599833 TBC1D3GQ6DHY5 549 aa19.7■□□□□ 0.74
SHKBP1-221ENST00000599833 TBC1D3CQ6IPX1 549 aa19.7■□□□□ 0.74
SHKBP1-221ENST00000599833 PEX26Q7Z412 305 aa19.7■□□□□ 0.74
SHKBP1-221ENST00000599833 TBC1D3Q8IZP1 549 aaPredicted RBP19.7■□□□□ 0.74
SHKBP1-221ENST00000599833 SYCE1Q8N0S2 351 aa19.7■□□□□ 0.74
SHKBP1-221ENST00000599833 TRAF3IP1Q8TDR0 691 aaPredicted RBP19.7■□□□□ 0.74
SHKBP1-221ENST00000599833 SLC6A18Q96N87 628 aa19.7■□□□□ 0.74
SHKBP1-221ENST00000599833 HEMGNQ9BXL5 484 aa19.7■□□□□ 0.74
SHKBP1-221ENST00000599833 MAK16Q9BXY0 300 aaKnown RBP19.7■□□□□ 0.74
SHKBP1-221ENST00000599833 NT5MQ9NPB1 228 aa19.7■□□□□ 0.74
SHKBP1-221ENST00000599833 AMFRQ9UKV5 643 aa19.7■□□□□ 0.74
SHKBP1-221ENST00000599833 A0A1B0GTW7 788 aa19.69■□□□□ 0.74
SHKBP1-221ENST00000599833 A0A1W2PQU0 124 aa19.69■□□□□ 0.74
SHKBP1-221ENST00000599833 MIF4GDA9UHW6 222 aaKnown RBP19.69■□□□□ 0.74
SHKBP1-221ENST00000599833 KCNK1O00180 336 aa19.69■□□□□ 0.74
SHKBP1-221ENST00000599833 KRT86O43790 486 aa19.69■□□□□ 0.74
SHKBP1-221ENST00000599833 FZD6O60353 706 aa19.69■□□□□ 0.74
SHKBP1-221ENST00000599833 RNGTTO60942 597 aaKnown RBP19.69■□□□□ 0.74
SHKBP1-221ENST00000599833 WNT1P04628 370 aa19.69■□□□□ 0.74
SHKBP1-221ENST00000599833 RAD51Q06609 339 aa19.69■□□□□ 0.74
SHKBP1-221ENST00000599833 KLF1Q13351 362 aaPredicted RBP19.69■□□□□ 0.74
SHKBP1-221ENST00000599833 PDK1Q15118 436 aa19.69■□□□□ 0.74
SHKBP1-221ENST00000599833 HORMAD1Q86X24 394 aa19.69■□□□□ 0.74
SHKBP1-221ENST00000599833 RGL4Q8IZJ4 473 aa19.69■□□□□ 0.74
SHKBP1-221ENST00000599833 CEP76Q8TAP6 659 aa19.69■□□□□ 0.74
SHKBP1-221ENST00000599833 RAB7BQ96AH8 199 aa19.69■□□□□ 0.74
SHKBP1-221ENST00000599833 ZNF830Q96NB3 372 aaPredicted RBP19.69■□□□□ 0.74
SHKBP1-221ENST00000599833 OSBPL8Q9BZF1 889 aa19.69■□□□□ 0.74
SHKBP1-221ENST00000599833 DYRK4Q9NR20 520 aa19.69■□□□□ 0.74
SHKBP1-221ENST00000599833 RBM22Q9NW64 420 aaKnown RBP eCLIP19.69■□□□□ 0.74
SHKBP1-221ENST00000599833 AMACRQ9UHK6 382 aa19.69■□□□□ 0.74
SHKBP1-221ENST00000599833 KHNYNO15037 678 aaKnown RBP19.68■□□□□ 0.74
SHKBP1-221ENST00000599833 BCAT2O15382 392 aaPredicted RBP19.68■□□□□ 0.74
SHKBP1-221ENST00000599833 MAT2AP31153 395 aaKnown RBP19.68■□□□□ 0.74
SHKBP1-221ENST00000599833 ZNF211Q13398 564 aaPredicted RBP19.68■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms