RNA–Protein interactions for RNA: ENST00000597649.5

SHKBP1-215, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 781 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-215ENST00000597649 LRRC31Q6UY01 552 aa16.71■□□□□ 0.27
SHKBP1-215ENST00000597649 SLC47A2Q86VL8 602 aa16.71■□□□□ 0.27
SHKBP1-215ENST00000597649 ARL14Q8N4G2 192 aa16.71■□□□□ 0.27
SHKBP1-215ENST00000597649 OR6K2Q8NGY2 324 aa16.71■□□□□ 0.27
SHKBP1-215ENST00000597649 ASB12Q8WXK4 309 aa16.71■□□□□ 0.27
SHKBP1-215ENST00000597649 CCDC97Q96F63 343 aaPredicted RBP16.71■□□□□ 0.27
SHKBP1-215ENST00000597649 CCDC3Q9BQI4 270 aa16.71■□□□□ 0.27
SHKBP1-215ENST00000597649 LRRC61Q9BV99 259 aa16.71■□□□□ 0.27
SHKBP1-215ENST00000597649 ZDHHC6Q9H6R6 413 aa16.71■□□□□ 0.27
SHKBP1-215ENST00000597649 ATP13A1Q9HD20 1204 aa16.71■□□□□ 0.27
SHKBP1-215ENST00000597649 RRN3Q9NYV6 651 aa16.71■□□□□ 0.27
SHKBP1-215ENST00000597649 HECAQ9UBI9 543 aaPredicted RBP16.71■□□□□ 0.27
SHKBP1-215ENST00000597649 SPASTQ9UBP0 616 aa16.71■□□□□ 0.27
SHKBP1-215ENST00000597649 RABGEF1Q9UJ41 708 aa16.71■□□□□ 0.27
SHKBP1-215ENST00000597649 DAAM1Q9Y4D1 1078 aa16.71■□□□□ 0.27
SHKBP1-215ENST00000597649 CCDC187A0A096LP49 1063 aa16.7■□□□□ 0.26
SHKBP1-215ENST00000597649 LMO7DNF2Z398 122 aa16.7■□□□□ 0.26
SHKBP1-215ENST00000597649 FOXN3O00409 490 aaPredicted RBP16.7■□□□□ 0.26
SHKBP1-215ENST00000597649 TSPAN6O43657 245 aa16.7■□□□□ 0.26
SHKBP1-215ENST00000597649 NOBOXO60393 691 aa16.7■□□□□ 0.26
SHKBP1-215ENST00000597649 UCHL3P15374 230 aa16.7■□□□□ 0.26
SHKBP1-215ENST00000597649 ACVRL1P37023 503 aa16.7■□□□□ 0.26
SHKBP1-215ENST00000597649 POLR2FP61218 127 aaKnown RBP16.7■□□□□ 0.26
SHKBP1-215ENST00000597649 SRSF6Q13247 344 aaKnown RBP16.7■□□□□ 0.26
SHKBP1-215ENST00000597649 C6orf132Q5T0Z8 1188 aa16.7■□□□□ 0.26
SHKBP1-215ENST00000597649 RETSATQ6NUM9 610 aa16.7■□□□□ 0.26
SHKBP1-215ENST00000597649 B3GNT8Q7Z7M8 397 aa16.7■□□□□ 0.26
SHKBP1-215ENST00000597649 PHACTR4Q8IZ21 702 aa16.7■□□□□ 0.26
SHKBP1-215ENST00000597649 CCNL2Q96S94 520 aaPredicted RBP16.7■□□□□ 0.26
SHKBP1-215ENST00000597649 TM6SF2Q9BZW4 377 aa16.7■□□□□ 0.26
SHKBP1-215ENST00000597649 SYNCQ9H7C4 482 aa16.7■□□□□ 0.26
SHKBP1-215ENST00000597649 MBNL1Q9NR56 388 aaKnown RBP16.7■□□□□ 0.26
SHKBP1-215ENST00000597649 NDFIP2Q9NV92 336 aa16.7■□□□□ 0.26
SHKBP1-215ENST00000597649 APOBEC3BQ9UH17 382 aaKnown RBP16.7■□□□□ 0.26
SHKBP1-215ENST00000597649 PADI4Q9UM07 663 aa16.7■□□□□ 0.26
SHKBP1-215ENST00000597649 GOLGA6L3A6NEY3 463 aa16.69■□□□□ 0.26
SHKBP1-215ENST00000597649 RIOK3O14730 519 aaKnown RBP16.69■□□□□ 0.26
SHKBP1-215ENST00000597649 F9P00740 461 aa16.69■□□□□ 0.26
SHKBP1-215ENST00000597649 ITGA2BP08514 1039 aa16.69■□□□□ 0.26
SHKBP1-215ENST00000597649 TSHRP16473 764 aa16.69■□□□□ 0.26
SHKBP1-215ENST00000597649 ITIH2P19823 946 aa16.69■□□□□ 0.26
SHKBP1-215ENST00000597649 KRT9P35527 623 aa16.69■□□□□ 0.26
SHKBP1-215ENST00000597649 IGFALSP35858 605 aa16.69■□□□□ 0.26
SHKBP1-215ENST00000597649 RPIAP49247 311 aa16.69■□□□□ 0.26
SHKBP1-215ENST00000597649 GNA12Q03113 381 aa16.69■□□□□ 0.26
SHKBP1-215ENST00000597649 PTK2Q05397 1052 aa16.69■□□□□ 0.26
SHKBP1-215ENST00000597649 TGIF1Q15583 401 aa16.69■□□□□ 0.26
SHKBP1-215ENST00000597649 SLC25A52Q3SY17 297 aa16.69■□□□□ 0.26
SHKBP1-215ENST00000597649 ZNF805Q5CZA5 627 aa16.69■□□□□ 0.26
SHKBP1-215ENST00000597649 ZNF783Q6ZMS7 281 aa16.69■□□□□ 0.26
SHKBP1-215ENST00000597649 NYAP1Q6ZVC0 841 aa16.69■□□□□ 0.26
SHKBP1-215ENST00000597649 BNIPLQ7Z465 357 aa16.69■□□□□ 0.26
SHKBP1-215ENST00000597649 DRC7Q8IY82 874 aa16.69■□□□□ 0.26
SHKBP1-215ENST00000597649 DENND6BQ8NEG7 585 aa16.69■□□□□ 0.26
SHKBP1-215ENST00000597649 BTN2A2Q8WVV5 523 aa16.69■□□□□ 0.26
SHKBP1-215ENST00000597649 ATXN7L1Q9ULK2 861 aaPredicted RBP16.69■□□□□ 0.26
SHKBP1-215ENST00000597649 FHOD1Q9Y613 1164 aa16.69■□□□□ 0.26
SHKBP1-215ENST00000597649 RELNP78509 3460 aa16.69■□□□□ 0.26
SHKBP1-215ENST00000597649 AREL1O15033 823 aa16.68■□□□□ 0.26
SHKBP1-215ENST00000597649 MMP20O60882 483 aa16.68■□□□□ 0.26
SHKBP1-215ENST00000597649 SLC5A2P31639 672 aa16.68■□□□□ 0.26
SHKBP1-215ENST00000597649 FLT3P36888 993 aa16.68■□□□□ 0.26
SHKBP1-215ENST00000597649 MLLT3P42568 568 aaPredicted RBP16.68■□□□□ 0.26
SHKBP1-215ENST00000597649 GABRB2P47870 512 aa16.68■□□□□ 0.26
SHKBP1-215ENST00000597649 NFATC3Q12968 1075 aa16.68■□□□□ 0.26
SHKBP1-215ENST00000597649 RAB6CQ53S08 254 aa16.68■□□□□ 0.26
SHKBP1-215ENST00000597649 C2CD6Q53TS8 623 aa16.68■□□□□ 0.26
SHKBP1-215ENST00000597649 LRRC73Q5JTD7 316 aa16.68■□□□□ 0.26
SHKBP1-215ENST00000597649 LEKR1Q6ZMV7 388 aa16.68■□□□□ 0.26
SHKBP1-215ENST00000597649 PRICKLE2Q7Z3G6 844 aa16.68■□□□□ 0.26
SHKBP1-215ENST00000597649 VPS36Q86VN1 386 aa16.68■□□□□ 0.26
SHKBP1-215ENST00000597649 ZSCAN30Q86W11 494 aa16.68■□□□□ 0.26
SHKBP1-215ENST00000597649 ZDHHC17Q8IUH5 632 aa16.68■□□□□ 0.26
SHKBP1-215ENST00000597649 PLPP6Q8IY26 295 aa16.68■□□□□ 0.26
SHKBP1-215ENST00000597649 GLMNQ92990 594 aa16.68■□□□□ 0.26
SHKBP1-215ENST00000597649 NAT6Q93015 286 aa16.68■□□□□ 0.26
SHKBP1-215ENST00000597649 RAB7BQ96AH8 199 aa16.68■□□□□ 0.26
SHKBP1-215ENST00000597649 ISG20Q96AZ6 181 aaKnown RBP16.68■□□□□ 0.26
SHKBP1-215ENST00000597649 HAPLN3Q96S86 360 aa16.68■□□□□ 0.26
SHKBP1-215ENST00000597649 STK33Q9BYT3 514 aa16.68■□□□□ 0.26
SHKBP1-215ENST00000597649 TRIM4Q9C037 500 aa16.68■□□□□ 0.26
SHKBP1-215ENST00000597649 ZYG11BQ9C0D3 744 aa16.68■□□□□ 0.26
SHKBP1-215ENST00000597649 RAB6CQ9H0N0 254 aa16.68■□□□□ 0.26
SHKBP1-215ENST00000597649 GANQ9H2C0 597 aa16.68■□□□□ 0.26
SHKBP1-215ENST00000597649 NLRC4Q9NPP4 1024 aa16.68■□□□□ 0.26
SHKBP1-215ENST00000597649 GULP1Q9UBP9 304 aa16.68■□□□□ 0.26
SHKBP1-215ENST00000597649 STAP1Q9ULZ2 295 aa16.68■□□□□ 0.26
SHKBP1-215ENST00000597649 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP16.68■□□□□ 0.26
SHKBP1-215ENST00000597649 DOCK4Q8N1I0 1966 aa16.68■□□□□ 0.26
SHKBP1-215ENST00000597649 NEMP1O14524 444 aa16.67■□□□□ 0.26
SHKBP1-215ENST00000597649 PLD2O14939 933 aa16.67■□□□□ 0.26
SHKBP1-215ENST00000597649 ANXA6P08133 673 aa16.67■□□□□ 0.26
SHKBP1-215ENST00000597649 HGFP14210 728 aa16.67■□□□□ 0.26
SHKBP1-215ENST00000597649 UGT1A5P35504 534 aa16.67■□□□□ 0.26
SHKBP1-215ENST00000597649 EIF4A3P38919 411 aaKnown RBP16.67■□□□□ 0.26
SHKBP1-215ENST00000597649 SNX16P57768 344 aa16.67■□□□□ 0.26
SHKBP1-215ENST00000597649 CCL7P80098 99 aa16.67■□□□□ 0.26
SHKBP1-215ENST00000597649 NFKB2Q00653 900 aa16.67■□□□□ 0.26
SHKBP1-215ENST00000597649 SPIDRQ14159 915 aa16.67■□□□□ 0.26
SHKBP1-215ENST00000597649 FAXCQ5TGI0 409 aa16.67■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms