RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 C14orf80Q86SX3 495 aa15.41■□□□□ 0.06
UPF1-204ENST00000596842 ERO1BQ86YB8 467 aa15.41■□□□□ 0.06
UPF1-204ENST00000596842 HERC6Q8IVU3 1022 aa15.41■□□□□ 0.06
UPF1-204ENST00000596842 LSMEM2Q8N112 164 aa15.41■□□□□ 0.06
UPF1-204ENST00000596842 ZNF786Q8N393 782 aa15.41■□□□□ 0.06
UPF1-204ENST00000596842 CNTD1Q8N815 330 aa15.41■□□□□ 0.06
UPF1-204ENST00000596842 ARRDC4Q8NCT1 418 aa15.41■□□□□ 0.06
UPF1-204ENST00000596842 CDCA5Q96FF9 252 aa15.41■□□□□ 0.06
UPF1-204ENST00000596842 SPATA7Q9P0W8 599 aa15.41■□□□□ 0.06
UPF1-204ENST00000596842 PTGDR2Q9Y5Y4 395 aa15.41■□□□□ 0.06
UPF1-204ENST00000596842 RNF103-CHMP3A0A140T963 221 aa15.4■□□□□ 0.06
UPF1-204ENST00000596842 PDLIM1O00151 329 aa15.4■□□□□ 0.06
UPF1-204ENST00000596842 E2F6O75461 281 aa15.4■□□□□ 0.06
UPF1-204ENST00000596842 ASLP04424 464 aa15.4■□□□□ 0.06
UPF1-204ENST00000596842 XIAPP98170 497 aa15.4■□□□□ 0.06
UPF1-204ENST00000596842 ZBTB49Q6ZSB9 765 aa15.4■□□□□ 0.06
UPF1-204ENST00000596842 NUP93Q8N1F7 819 aa15.4■□□□□ 0.06
UPF1-204ENST00000596842 TSPAN14Q8NG11 270 aa15.4■□□□□ 0.06
UPF1-204ENST00000596842 HDAC11Q96DB2 347 aa15.4■□□□□ 0.06
UPF1-204ENST00000596842 PSMD12O00232 456 aaPredicted RBP15.4■□□□□ 0.06
UPF1-204ENST00000596842 S100BP04271 92 aaPredicted RBP15.4■□□□□ 0.06
UPF1-204ENST00000596842 PSMD7P51665 324 aa15.4■□□□□ 0.06
UPF1-204ENST00000596842 SLC7A2P52569 658 aa15.4■□□□□ 0.06
UPF1-204ENST00000596842 PAFAH1B3Q15102 231 aaKnown RBP15.4■□□□□ 0.06
UPF1-204ENST00000596842 TAPT1Q6NXT6 567 aa15.4■□□□□ 0.06
UPF1-204ENST00000596842 TFAP2DQ7Z6R9 452 aa15.4■□□□□ 0.06
UPF1-204ENST00000596842 DDIASQ8IXT1 998 aa15.4■□□□□ 0.06
UPF1-204ENST00000596842 PPHLN1Q8NEY8 458 aaKnown RBP15.4■□□□□ 0.06
UPF1-204ENST00000596842 PABPC5Q96DU9 382 aaKnown RBP15.4■□□□□ 0.06
UPF1-204ENST00000596842 PCED1BQ96HM7 432 aa15.4■□□□□ 0.06
UPF1-204ENST00000596842 SLC29A1Q99808 456 aa15.4■□□□□ 0.06
UPF1-204ENST00000596842 ALG9Q9H6U8 611 aa15.4■□□□□ 0.06
UPF1-204ENST00000596842 TNFRSF12AQ9NP84 129 aa15.4■□□□□ 0.06
UPF1-204ENST00000596842 TMEM30AQ9NV96 361 aa15.4■□□□□ 0.06
UPF1-204ENST00000596842 RBM22Q9NW64 420 aaKnown RBP eCLIP15.4■□□□□ 0.06
UPF1-204ENST00000596842 CAMSAP3Q9P1Y5 1249 aaPredicted RBP15.4■□□□□ 0.06
UPF1-204ENST00000596842 LCTP09848 1927 aa15.4■□□□□ 0.06
UPF1-204ENST00000596842 DOCK1Q14185 1865 aa15.4■□□□□ 0.06
UPF1-204ENST00000596842 TCAF2A6NFQ2 919 aa15.4■□□□□ 0.06
UPF1-204ENST00000596842 NR5A2O00482 541 aa15.4■□□□□ 0.06
UPF1-204ENST00000596842 BDNFP23560 247 aa15.4■□□□□ 0.06
UPF1-204ENST00000596842 RPS6KA2Q15349 733 aa15.4■□□□□ 0.06
UPF1-204ENST00000596842 NOL9Q5SY16 702 aaKnown RBP15.4■□□□□ 0.06
UPF1-204ENST00000596842 MARVELD2Q8N4S9 558 aa15.4■□□□□ 0.06
UPF1-204ENST00000596842 C17orf50Q8WW18 174 aa15.4■□□□□ 0.06
UPF1-204ENST00000596842 EMID1Q96A84 441 aaPredicted RBP15.4■□□□□ 0.06
UPF1-204ENST00000596842 HAPLN3Q96S86 360 aa15.4■□□□□ 0.06
UPF1-204ENST00000596842 GPR22Q99680 433 aa15.4■□□□□ 0.06
UPF1-204ENST00000596842 MRPL46Q9H2W6 279 aaKnown RBP15.4■□□□□ 0.06
UPF1-204ENST00000596842 C7orf72A4D263 438 aa15.39■□□□□ 0.05
UPF1-204ENST00000596842 MRASO14807 208 aa15.39■□□□□ 0.05
UPF1-204ENST00000596842 CASQ2O14958 399 aaPredicted RBP15.39■□□□□ 0.05
UPF1-204ENST00000596842 FYNP06241 537 aa15.39■□□□□ 0.05
UPF1-204ENST00000596842 SMPD1P17405 629 aa15.39■□□□□ 0.05
UPF1-204ENST00000596842 NPY2RP49146 381 aa15.39■□□□□ 0.05
UPF1-204ENST00000596842 CSE1LP55060 971 aaKnown RBP15.39■□□□□ 0.05
UPF1-204ENST00000596842 KIAA0319Q5VV43 1072 aa15.39■□□□□ 0.05
UPF1-204ENST00000596842 ZFP1Q6P2D0 407 aa15.39■□□□□ 0.05
UPF1-204ENST00000596842 OR52K2Q8NGK3 314 aa15.39■□□□□ 0.05
UPF1-204ENST00000596842 PPTC7Q8NI37 304 aa15.39■□□□□ 0.05
UPF1-204ENST00000596842 SENP8Q96LD8 212 aa15.39■□□□□ 0.05
UPF1-204ENST00000596842 TEKT5Q96M29 485 aa15.39■□□□□ 0.05
UPF1-204ENST00000596842 TBL1YQ9BQ87 522 aa15.39■□□□□ 0.05
UPF1-204ENST00000596842 A0A0G2JLL6 359 aaPredicted RBP15.39■□□□□ 0.05
UPF1-204ENST00000596842 OR51F1A6NGY5 319 aa15.39■□□□□ 0.05
UPF1-204ENST00000596842 APOA4P06727 396 aa15.39■□□□□ 0.05
UPF1-204ENST00000596842 PRDX6P30041 224 aa15.39■□□□□ 0.05
UPF1-204ENST00000596842 C1QTNF8P60827 252 aa15.39■□□□□ 0.05
UPF1-204ENST00000596842 PLIN5Q00G26 463 aa15.39■□□□□ 0.05
UPF1-204ENST00000596842 PPIDQ08752 370 aaKnown RBP15.39■□□□□ 0.05
UPF1-204ENST00000596842 GRM2Q14416 872 aa15.39■□□□□ 0.05
UPF1-204ENST00000596842 CAPRIN1Q14444 709 aaKnown RBP15.39■□□□□ 0.05
UPF1-204ENST00000596842 MGAT5BQ3V5L5 792 aa15.39■□□□□ 0.05
UPF1-204ENST00000596842 PAQR9Q6ZVX9 377 aa15.39■□□□□ 0.05
UPF1-204ENST00000596842 LPCAT2Q7L5N7 544 aa15.39■□□□□ 0.05
UPF1-204ENST00000596842 PRRT2Q7Z6L0 340 aaPredicted RBP15.39■□□□□ 0.05
UPF1-204ENST00000596842 CLEC14AQ86T13 490 aa15.39■□□□□ 0.05
UPF1-204ENST00000596842 MFSD6LQ8IWD5 586 aa15.39■□□□□ 0.05
UPF1-204ENST00000596842 FAM47BQ8NA70 645 aa15.39■□□□□ 0.05
UPF1-204ENST00000596842 HSPBAP1Q96EW2 488 aa15.39■□□□□ 0.05
UPF1-204ENST00000596842 BPTFQ12830 3046 aa15.39■□□□□ 0.05
UPF1-204ENST00000596842 ARHGAP10A1A4S6 786 aa15.39■□□□□ 0.05
UPF1-204ENST00000596842 HEATR9A2RTY3 570 aa15.39■□□□□ 0.05
UPF1-204ENST00000596842 TRIM38O00635 465 aa15.39■□□□□ 0.05
UPF1-204ENST00000596842 LRPAP1P30533 357 aa15.39■□□□□ 0.05
UPF1-204ENST00000596842 PCYT1AP49585 367 aa15.39■□□□□ 0.05
UPF1-204ENST00000596842 ATP1A4Q13733 1029 aa15.39■□□□□ 0.05
UPF1-204ENST00000596842 SETD3Q86TU7 594 aaPredicted RBP15.39■□□□□ 0.05
UPF1-204ENST00000596842 CATSPER1Q8NEC5 780 aa15.39■□□□□ 0.05
UPF1-204ENST00000596842 CYGBQ8WWM9 190 aa15.39■□□□□ 0.05
UPF1-204ENST00000596842 GAD1Q99259 594 aa15.39■□□□□ 0.05
UPF1-204ENST00000596842 RCOR3Q9P2K3 495 aaPredicted RBP15.39■□□□□ 0.05
UPF1-204ENST00000596842 FBXO5Q9UKT4 447 aa15.39■□□□□ 0.05
UPF1-204ENST00000596842 SSC5DA1L4H1 1573 aa15.39■□□□□ 0.05
UPF1-204ENST00000596842 PRORSD1PA6NEY8 169 aa15.38■□□□□ 0.05
UPF1-204ENST00000596842 SDHDO14521 159 aa15.38■□□□□ 0.05
UPF1-204ENST00000596842 TREHO43280 583 aa15.38■□□□□ 0.05
UPF1-204ENST00000596842 PIRTP0C851 137 aa15.38■□□□□ 0.05
UPF1-204ENST00000596842 CD151P48509 253 aa15.38■□□□□ 0.05
UPF1-204ENST00000596842 FUT11Q495W5 492 aa15.38■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms