RNA–Protein interactions for RNA: ENST00000596121.5

VRK3-210, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 983 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-210ENST00000596121 SNX11Q9Y5W9 270 aa11.28□□□□□ -0.6
VRK3-210ENST00000596121 CABIN1Q9Y6J0 2220 aa11.27□□□□□ -0.61
VRK3-210ENST00000596121 TSPAN11A1L157 253 aa11.27□□□□□ -0.61
VRK3-210ENST00000596121 TRAFD1O14545 582 aaPredicted RBP11.27□□□□□ -0.61
VRK3-210ENST00000596121 RAD51BO15315 384 aa11.27□□□□□ -0.61
VRK3-210ENST00000596121 SLC31A1O15431 190 aa11.27□□□□□ -0.61
VRK3-210ENST00000596121 PSTPIP1O43586 416 aa11.27□□□□□ -0.61
VRK3-210ENST00000596121 AP1G1O43747 822 aa11.27□□□□□ -0.61
VRK3-210ENST00000596121 PCDH8O95206 1070 aa11.27□□□□□ -0.61
VRK3-210ENST00000596121 SERPINB6P35237 376 aa11.27□□□□□ -0.61
VRK3-210ENST00000596121 PEX5P50542 639 aa11.27□□□□□ -0.61
VRK3-210ENST00000596121 SCNN1BP51168 640 aa11.27□□□□□ -0.61
VRK3-210ENST00000596121 AFF3P51826 1226 aaKnown RBP11.27□□□□□ -0.61
VRK3-210ENST00000596121 MAXP61244 160 aa11.27□□□□□ -0.61
VRK3-210ENST00000596121 RACK1P63244 317 aaKnown RBP11.27□□□□□ -0.61
VRK3-210ENST00000596121 PUM1Q14671 1186 aaKnown RBP eCLIP11.27□□□□□ -0.61
VRK3-210ENST00000596121 SPOCD1Q6ZMY3 1216 aa11.27□□□□□ -0.61
VRK3-210ENST00000596121 RABEPKQ7Z6M1 372 aa11.27□□□□□ -0.61
VRK3-210ENST00000596121 DAAM2Q86T65 1068 aa11.27□□□□□ -0.61
VRK3-210ENST00000596121 TTC7BQ86TV6 843 aa11.27□□□□□ -0.61
VRK3-210ENST00000596121 KATNAL2Q8IYT4 538 aa11.27□□□□□ -0.61
VRK3-210ENST00000596121 MINDY1Q8N5J2 469 aa11.27□□□□□ -0.61
VRK3-210ENST00000596121 SERAC1Q96JX3 654 aa11.27□□□□□ -0.61
VRK3-210ENST00000596121 LGMNQ99538 433 aa11.27□□□□□ -0.61
VRK3-210ENST00000596121 MYOCQ99972 504 aa11.27□□□□□ -0.61
VRK3-210ENST00000596121 MGME1Q9BQP7 344 aa11.27□□□□□ -0.61
VRK3-210ENST00000596121 CINPQ9BW66 212 aaPredicted RBP11.27□□□□□ -0.61
VRK3-210ENST00000596121 SUV39H2Q9H5I1 410 aa11.27□□□□□ -0.61
VRK3-210ENST00000596121 GRPEL1Q9HAV7 217 aa11.27□□□□□ -0.61
VRK3-210ENST00000596121 NOD2Q9HC29 1040 aa11.27□□□□□ -0.61
VRK3-210ENST00000596121 FZD3Q9NPG1 666 aa11.27□□□□□ -0.61
VRK3-210ENST00000596121 LUC7LQ9NQ29 371 aaKnown RBP11.27□□□□□ -0.61
VRK3-210ENST00000596121 DDX56Q9NY93 547 aaKnown RBP11.27□□□□□ -0.61
VRK3-210ENST00000596121 SEPT3Q9UH03 358 aa11.27□□□□□ -0.61
VRK3-210ENST00000596121 CDV3Q9UKY7 258 aaKnown RBP11.27□□□□□ -0.61
VRK3-210ENST00000596121 ANKRD6Q9Y2G4 727 aa11.27□□□□□ -0.61
VRK3-210ENST00000596121 ADGRG1Q9Y653 693 aa11.27□□□□□ -0.61
VRK3-210ENST00000596121 IGLON5A6NGN9 336 aa11.26□□□□□ -0.61
VRK3-210ENST00000596121 H0Y8X5 98 aa11.26□□□□□ -0.61
VRK3-210ENST00000596121 MATN3O15232 486 aa11.26□□□□□ -0.61
VRK3-210ENST00000596121 MMP20O60882 483 aa11.26□□□□□ -0.61
VRK3-210ENST00000596121 CD59P13987 128 aa11.26□□□□□ -0.61
VRK3-210ENST00000596121 PECAM1P16284 738 aaPredicted RBP11.26□□□□□ -0.61
VRK3-210ENST00000596121 CCNCP24863 283 aa11.26□□□□□ -0.61
VRK3-210ENST00000596121 CTNNA1P35221 906 aaKnown RBP11.26□□□□□ -0.61
VRK3-210ENST00000596121 CTSKP43235 329 aa11.26□□□□□ -0.61
VRK3-210ENST00000596121 MMP13P45452 471 aa11.26□□□□□ -0.61
VRK3-210ENST00000596121 GRIA4P48058 902 aa11.26□□□□□ -0.61
VRK3-210ENST00000596121 GSDMDP57764 484 aa11.26□□□□□ -0.61
VRK3-210ENST00000596121 DYNLT1P63172 113 aa11.26□□□□□ -0.61
VRK3-210ENST00000596121 NIPAL4Q0D2K0 466 aa11.26□□□□□ -0.61
VRK3-210ENST00000596121 PTPRRQ15256 657 aa11.26□□□□□ -0.61
VRK3-210ENST00000596121 IFI16Q16666 785 aaKnown RBP11.26□□□□□ -0.61
VRK3-210ENST00000596121 UGP2Q16851 508 aa11.26□□□□□ -0.61
VRK3-210ENST00000596121 HLA-BQ31612 363 aa11.26□□□□□ -0.61
VRK3-210ENST00000596121 UAP1L1Q3KQV9 507 aa11.26□□□□□ -0.61
VRK3-210ENST00000596121 NAPEPLDQ6IQ20 393 aa11.26□□□□□ -0.61
VRK3-210ENST00000596121 AADACL2Q6P093 401 aa11.26□□□□□ -0.61
VRK3-210ENST00000596121 NEK5Q6P3R8 708 aa11.26□□□□□ -0.61
VRK3-210ENST00000596121 KIAA1328Q86T90 577 aa11.26□□□□□ -0.61
VRK3-210ENST00000596121 PRPF39Q86UA1 669 aaKnown RBP11.26□□□□□ -0.61
VRK3-210ENST00000596121 VSIG1Q86XK7 387 aa11.26□□□□□ -0.61
VRK3-210ENST00000596121 SPATS2Q86XZ4 545 aaKnown RBP11.26□□□□□ -0.61
VRK3-210ENST00000596121 RFX6Q8HWS3 928 aa11.26□□□□□ -0.61
VRK3-210ENST00000596121 LRRC49Q8IUZ0 686 aa11.26□□□□□ -0.61
VRK3-210ENST00000596121 LRRC8AQ8IWT6 810 aa11.26□□□□□ -0.61
VRK3-210ENST00000596121 CNTD1Q8N815 330 aa11.26□□□□□ -0.61
VRK3-210ENST00000596121 TMEM145Q8NBT3 493 aa11.26□□□□□ -0.61
VRK3-210ENST00000596121 ARRDC2Q8TBH0 407 aa11.26□□□□□ -0.61
VRK3-210ENST00000596121 HCAR2Q8TDS4 363 aa11.26□□□□□ -0.61
VRK3-210ENST00000596121 ALG3Q92685 438 aa11.26□□□□□ -0.61
VRK3-210ENST00000596121 ECHDC3Q96DC8 303 aa11.26□□□□□ -0.61
VRK3-210ENST00000596121 ZNF641Q96N77 438 aaPredicted RBP11.26□□□□□ -0.61
VRK3-210ENST00000596121 OLFM3Q96PB7 478 aa11.26□□□□□ -0.61
VRK3-210ENST00000596121 SMIM14Q96QK8 99 aa11.26□□□□□ -0.61
VRK3-210ENST00000596121 NUDCD1Q96RS6 583 aa11.26□□□□□ -0.61
VRK3-210ENST00000596121 TUBGCP5Q96RT8 1024 aa11.26□□□□□ -0.61
VRK3-210ENST00000596121 KLF6Q99612 283 aaPredicted RBP11.26□□□□□ -0.61
VRK3-210ENST00000596121 RTKNQ9BST9 563 aa11.26□□□□□ -0.61
VRK3-210ENST00000596121 C1QTNF2Q9BXJ5 285 aa11.26□□□□□ -0.61
VRK3-210ENST00000596121 NT5MQ9NPB1 228 aa11.26□□□□□ -0.61
VRK3-210ENST00000596121 PCDH12Q9NPG4 1184 aa11.26□□□□□ -0.61
VRK3-210ENST00000596121 FNDC3AQ9Y2H6 1198 aaKnown RBP11.26□□□□□ -0.61
VRK3-210ENST00000596121 PCDHGC4Q9Y5F7 938 aa11.26□□□□□ -0.61
VRK3-210ENST00000596121 HEY1Q9Y5J3 304 aa11.26□□□□□ -0.61
VRK3-210ENST00000596121 SHROOM3Q8TF72 1996 aa11.26□□□□□ -0.61
VRK3-210ENST00000596121 TRPM6Q9BX84 2022 aa11.26□□□□□ -0.61
VRK3-210ENST00000596121 NCOR2Q9Y618 2525 aa11.25□□□□□ -0.61
VRK3-210ENST00000596121 hCG_1818297A0A087WSY0 165 aa11.25□□□□□ -0.61
VRK3-210ENST00000596121 MACROD2A1Z1Q3 448 aa11.25□□□□□ -0.61
VRK3-210ENST00000596121 APOL1O14791 398 aa11.25□□□□□ -0.61
VRK3-210ENST00000596121 GIPC1O14908 333 aa11.25□□□□□ -0.61
VRK3-210ENST00000596121 VILLO15195 856 aa11.25□□□□□ -0.61
VRK3-210ENST00000596121 HTRA2O43464 458 aaPredicted RBP11.25□□□□□ -0.61
VRK3-210ENST00000596121 CST8O60676 142 aa11.25□□□□□ -0.61
VRK3-210ENST00000596121 IPO7O95373 1038 aaKnown RBP11.25□□□□□ -0.61
VRK3-210ENST00000596121 PAK4O96013 591 aaPredicted RBP11.25□□□□□ -0.61
VRK3-210ENST00000596121 SYPP08247 313 aa11.25□□□□□ -0.61
VRK3-210ENST00000596121 CTNNA2P26232 953 aa11.25□□□□□ -0.61
VRK3-210ENST00000596121 RENBPP51606 427 aa11.25□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms