RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 C17orf82Q86X59 251 aaPredicted RBP16.43■□□□□ 0.22
VPS53-218ENST00000575207 IQCKQ8N0W5 287 aa16.43■□□□□ 0.22
VPS53-218ENST00000575207 SCML4Q8N228 414 aa16.43■□□□□ 0.22
VPS53-218ENST00000575207 FAM184AQ8NB25 1140 aa16.43■□□□□ 0.22
VPS53-218ENST00000575207 ANKRD52Q8NB46 1076 aa16.43■□□□□ 0.22
VPS53-218ENST00000575207 GLIS1Q8NBF1 620 aa16.43■□□□□ 0.22
VPS53-218ENST00000575207 GRIN3AQ8TCU5 1115 aa16.43■□□□□ 0.22
VPS53-218ENST00000575207 SLC39A13Q96H72 371 aa16.43■□□□□ 0.22
VPS53-218ENST00000575207 IPO9Q96P70 1041 aaKnown RBP16.43■□□□□ 0.22
VPS53-218ENST00000575207 TWSG1Q9GZX9 223 aa16.43■□□□□ 0.22
VPS53-218ENST00000575207 OR51B4Q9Y5P0 310 aa16.43■□□□□ 0.22
VPS53-218ENST00000575207 TULP2O00295 520 aa16.42■□□□□ 0.22
VPS53-218ENST00000575207 TGFB1I1O43294 461 aa16.42■□□□□ 0.22
VPS53-218ENST00000575207 CREG1O75629 220 aa16.42■□□□□ 0.22
VPS53-218ENST00000575207 MT-CO1P00395 513 aa16.42■□□□□ 0.22
VPS53-218ENST00000575207 C8BP07358 591 aa16.42■□□□□ 0.22
VPS53-218ENST00000575207 L1CAMP32004 1257 aa16.42■□□□□ 0.22
VPS53-218ENST00000575207 SLC8A3P57103 927 aa16.42■□□□□ 0.22
VPS53-218ENST00000575207 SRP54P61011 504 aaKnown RBP16.42■□□□□ 0.22
VPS53-218ENST00000575207 CHRNA6Q15825 494 aa16.42■□□□□ 0.22
VPS53-218ENST00000575207 STXBP4Q6ZWJ1 553 aa16.42■□□□□ 0.22
VPS53-218ENST00000575207 VPS36Q86VN1 386 aa16.42■□□□□ 0.22
VPS53-218ENST00000575207 PARD3BQ8TEW8 1205 aa16.42■□□□□ 0.22
VPS53-218ENST00000575207 DPYSL5Q9BPU6 564 aa16.42■□□□□ 0.22
VPS53-218ENST00000575207 DNAI2Q9GZS0 605 aa16.42■□□□□ 0.22
VPS53-218ENST00000575207 LRRC4Q9HBW1 653 aa16.42■□□□□ 0.22
VPS53-218ENST00000575207 CHST11Q9NPF2 352 aa16.42■□□□□ 0.22
VPS53-218ENST00000575207 MBNL1Q9NR56 388 aaKnown RBP16.42■□□□□ 0.22
VPS53-218ENST00000575207 PDP2Q9P2J9 529 aa16.42■□□□□ 0.22
VPS53-218ENST00000575207 XPO7Q9UIA9 1087 aaKnown RBP16.42■□□□□ 0.22
VPS53-218ENST00000575207 WASF2Q9Y6W5 498 aa16.42■□□□□ 0.22
VPS53-218ENST00000575207 LRP4O75096 1905 aa16.42■□□□□ 0.22
VPS53-218ENST00000575207 ATRQ13535 2644 aa16.42■□□□□ 0.22
VPS53-218ENST00000575207 TMEM200CA6NKL6 621 aa16.41■□□□□ 0.22
VPS53-218ENST00000575207 LRRIQ3A6PVS8 624 aaPredicted RBP16.41■□□□□ 0.22
VPS53-218ENST00000575207 EIF5BO60841 1220 aaKnown RBP16.41■□□□□ 0.22
VPS53-218ENST00000575207 COX6B1P14854 86 aa16.41■□□□□ 0.22
VPS53-218ENST00000575207 TACR2P21452 398 aa16.41■□□□□ 0.22
VPS53-218ENST00000575207 MPSTP25325 297 aa16.41■□□□□ 0.22
VPS53-218ENST00000575207 SSTR2P30874 369 aa16.41■□□□□ 0.22
VPS53-218ENST00000575207 GPR3P46089 330 aa16.41■□□□□ 0.22
VPS53-218ENST00000575207 ADIGQ0VDE8 80 aa16.41■□□□□ 0.22
VPS53-218ENST00000575207 NNTQ13423 1086 aa16.41■□□□□ 0.22
VPS53-218ENST00000575207 ZACNQ401N2 412 aa16.41■□□□□ 0.22
VPS53-218ENST00000575207 RAP1GAP2Q684P5 730 aa16.41■□□□□ 0.22
VPS53-218ENST00000575207 ARHGAP17Q68EM7 881 aa16.41■□□□□ 0.22
VPS53-218ENST00000575207 SPECC1LQ69YQ0 1117 aa16.41■□□□□ 0.22
VPS53-218ENST00000575207 LYSMD3Q7Z3D4 306 aa16.41■□□□□ 0.22
VPS53-218ENST00000575207 CISD2Q8N5K1 135 aaKnown RBP16.41■□□□□ 0.22
VPS53-218ENST00000575207 ST6GALNAC3Q8NDV1 305 aa16.41■□□□□ 0.22
VPS53-218ENST00000575207 LLPHQ9BRT6 129 aaKnown RBP16.41■□□□□ 0.22
VPS53-218ENST00000575207 PANK4Q9NVE7 773 aa16.41■□□□□ 0.22
VPS53-218ENST00000575207 STK17AQ9UEE5 414 aa16.41■□□□□ 0.22
VPS53-218ENST00000575207 TLR6Q9Y2C9 796 aa16.41■□□□□ 0.22
VPS53-218ENST00000575207 PCDHGA6Q9Y5G7 932 aa16.41■□□□□ 0.22
VPS53-218ENST00000575207 DGKBQ9Y6T7 804 aa16.41■□□□□ 0.22
VPS53-218ENST00000575207 PIPSLA2A3N6 862 aa16.4■□□□□ 0.22
VPS53-218ENST00000575207 TCAF2A6NFQ2 919 aa16.4■□□□□ 0.22
VPS53-218ENST00000575207 B4DGG1 531 aa16.4■□□□□ 0.22
VPS53-218ENST00000575207 XPO1O14980 1071 aaKnown RBP16.4■□□□□ 0.22
VPS53-218ENST00000575207 SPTLC2O15270 562 aa16.4■□□□□ 0.22
VPS53-218ENST00000575207 CEACAM4O75871 244 aa16.4■□□□□ 0.22
VPS53-218ENST00000575207 CSF2RBP32927 897 aa16.4■□□□□ 0.22
VPS53-218ENST00000575207 LONP1P36776 959 aaKnown RBP16.4■□□□□ 0.22
VPS53-218ENST00000575207 NOP2P46087 812 aaKnown RBP16.4■□□□□ 0.22
VPS53-218ENST00000575207 DAOAP59103 153 aa16.4■□□□□ 0.22
VPS53-218ENST00000575207 HMGN5P82970 282 aaKnown RBP16.4■□□□□ 0.22
VPS53-218ENST00000575207 CDK18Q07002 472 aa16.4■□□□□ 0.22
VPS53-218ENST00000575207 ENPP7Q6UWV6 458 aa16.4■□□□□ 0.22
VPS53-218ENST00000575207 DPY19L3Q6ZPD9 716 aa16.4■□□□□ 0.22
VPS53-218ENST00000575207 NYAP1Q6ZVC0 841 aa16.4■□□□□ 0.22
VPS53-218ENST00000575207 SV2BQ7L1I2 683 aa16.4■□□□□ 0.22
VPS53-218ENST00000575207 PARS2Q7L3T8 475 aaKnown RBP16.4■□□□□ 0.22
VPS53-218ENST00000575207 TAF8Q7Z7C8 310 aa16.4■□□□□ 0.22
VPS53-218ENST00000575207 RHOT1Q8IXI2 618 aa16.4■□□□□ 0.22
VPS53-218ENST00000575207 TP53I13Q8NBR0 393 aaPredicted RBP16.4■□□□□ 0.22
VPS53-218ENST00000575207 OR52K2Q8NGK3 314 aa16.4■□□□□ 0.22
VPS53-218ENST00000575207 RAB7BQ96AH8 199 aa16.4■□□□□ 0.22
VPS53-218ENST00000575207 DPEP2Q9H4A9 486 aa16.4■□□□□ 0.22
VPS53-218ENST00000575207 APMAPQ9HDC9 416 aa16.4■□□□□ 0.22
VPS53-218ENST00000575207 CNGB3Q9NQW8 809 aa16.4■□□□□ 0.22
VPS53-218ENST00000575207 TMEM9Q9P0T7 183 aa16.4■□□□□ 0.22
VPS53-218ENST00000575207 RHPN2P1A8MT19 583 aa16.39■□□□□ 0.21
VPS53-218ENST00000575207 K7ERQ8 282 aa16.39■□□□□ 0.21
VPS53-218ENST00000575207 CLIC2O15247 247 aa16.39■□□□□ 0.21
VPS53-218ENST00000575207 KATNA1O75449 491 aa16.39■□□□□ 0.21
VPS53-218ENST00000575207 TNFP01375 233 aa16.39■□□□□ 0.21
VPS53-218ENST00000575207 SNRPB2P08579 225 aaKnown RBP16.39■□□□□ 0.21
VPS53-218ENST00000575207 CD58P19256 250 aa16.39■□□□□ 0.21
VPS53-218ENST00000575207 BMP6P22004 513 aa16.39■□□□□ 0.21
VPS53-218ENST00000575207 HTR1BP28222 390 aa16.39■□□□□ 0.21
VPS53-218ENST00000575207 CCL11P51671 97 aa16.39■□□□□ 0.21
VPS53-218ENST00000575207 NFATC4Q14934 902 aa16.39■□□□□ 0.21
VPS53-218ENST00000575207 MIIPQ5JXC2 388 aa16.39■□□□□ 0.21
VPS53-218ENST00000575207 CPZQ66K79 652 aa16.39■□□□□ 0.21
VPS53-218ENST00000575207 CHSY1Q86X52 802 aa16.39■□□□□ 0.21
VPS53-218ENST00000575207 CIR1Q86X95 450 aaPredicted RBP16.39■□□□□ 0.21
VPS53-218ENST00000575207 ATP11CQ8NB49 1132 aa16.39■□□□□ 0.21
VPS53-218ENST00000575207 THAP4Q8WY91 577 aa16.39■□□□□ 0.21
VPS53-218ENST00000575207 TATDN2Q93075 761 aa16.39■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms