RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 POMKQ9H5K3 350 aa23■■□□□ 1.27
VPS53-211ENST00000571805 NOL6Q9H6R4 1146 aaKnown RBP23■■□□□ 1.27
VPS53-211ENST00000571805 C6orf203Q9P0P8 240 aaPredicted RBP23■■□□□ 1.27
VPS53-211ENST00000571805 CELF2O95319 508 aaKnown RBP22.99■■□□□ 1.27
VPS53-211ENST00000571805 PEX11BO96011 259 aa22.99■■□□□ 1.27
VPS53-211ENST00000571805 CPB1P15086 417 aa22.99■■□□□ 1.27
VPS53-211ENST00000571805 ATP5F1P24539 256 aaPredicted RBP22.99■■□□□ 1.27
VPS53-211ENST00000571805 CD52P31358 61 aa22.99■■□□□ 1.27
VPS53-211ENST00000571805 WNT3AP56704 352 aa22.99■■□□□ 1.27
VPS53-211ENST00000571805 SEPT6Q14141 434 aa22.99■■□□□ 1.27
VPS53-211ENST00000571805 ZNF789Q5FWF6 425 aa22.99■■□□□ 1.27
VPS53-211ENST00000571805 MAP3K21Q5TCX8 1036 aa22.99■■□□□ 1.27
VPS53-211ENST00000571805 THEMIS2Q5TEJ8 643 aa22.99■■□□□ 1.27
VPS53-211ENST00000571805 TRIM67Q6ZTA4 783 aa22.99■■□□□ 1.27
VPS53-211ENST00000571805 SPNS2Q8IVW8 549 aa22.99■■□□□ 1.27
VPS53-211ENST00000571805 SPDYE1Q8NFV5 336 aaPredicted RBP22.99■■□□□ 1.27
VPS53-211ENST00000571805 ARNT2Q9HBZ2 717 aa22.99■■□□□ 1.27
VPS53-211ENST00000571805 TBC1D13Q9NVG8 400 aa22.99■■□□□ 1.27
VPS53-211ENST00000571805 IPO11Q9UI26 975 aaKnown RBP22.99■■□□□ 1.27
VPS53-211ENST00000571805 TCAF2A6NFQ2 919 aa22.99■■□□□ 1.27
VPS53-211ENST00000571805 NEMP2A6NFY4 417 aa22.99■■□□□ 1.27
VPS53-211ENST00000571805 F8W810 466 aa22.99■■□□□ 1.27
VPS53-211ENST00000571805 ALDH1A3P47895 512 aa22.99■■□□□ 1.27
VPS53-211ENST00000571805 RPL26P61254 145 aaKnown RBP22.99■■□□□ 1.27
VPS53-211ENST00000571805 SH2D4BQ5SQS7 431 aa22.99■■□□□ 1.27
VPS53-211ENST00000571805 KIAA0408Q6ZU52 694 aa22.99■■□□□ 1.27
VPS53-211ENST00000571805 LRRC49Q8IUZ0 686 aa22.99■■□□□ 1.27
VPS53-211ENST00000571805 GBP5Q96PP8 586 aa22.99■■□□□ 1.27
VPS53-211ENST00000571805 WDR41Q9HAD4 459 aa22.99■■□□□ 1.27
VPS53-211ENST00000571805 OSER1Q9NX31 292 aa22.99■■□□□ 1.27
VPS53-211ENST00000571805 INPP5FQ9Y2H2 1132 aa22.99■■□□□ 1.27
VPS53-211ENST00000571805 SNUPNO95149 360 aaKnown RBP22.98■■□□□ 1.27
VPS53-211ENST00000571805 MOCS2O96007 188 aaPredicted RBP22.98■■□□□ 1.27
VPS53-211ENST00000571805 MLLT6P55198 1093 aaPredicted RBP22.98■■□□□ 1.27
VPS53-211ENST00000571805 MS4A2Q01362 244 aa22.98■■□□□ 1.27
VPS53-211ENST00000571805 NRG1Q02297 640 aaPredicted RBP22.98■■□□□ 1.27
VPS53-211ENST00000571805 TUSC3Q13454 348 aa22.98■■□□□ 1.27
VPS53-211ENST00000571805 THEM5Q8N1Q8 247 aa22.98■■□□□ 1.27
VPS53-211ENST00000571805 OLFM1Q99784 485 aa22.98■■□□□ 1.27
VPS53-211ENST00000571805 SUDS3Q9H7L9 328 aaPredicted RBP22.98■■□□□ 1.27
VPS53-211ENST00000571805 EFCAB1Q9HAE3 211 aa22.98■■□□□ 1.27
VPS53-211ENST00000571805 ATP13A1Q9HD20 1204 aa22.98■■□□□ 1.27
VPS53-211ENST00000571805 PAPOLBQ9NRJ5 636 aaKnown RBP22.98■■□□□ 1.27
VPS53-211ENST00000571805 TRPC5OSA6NMA1 111 aa22.98■■□□□ 1.27
VPS53-211ENST00000571805 WASH4PA8MWX3 477 aa22.98■■□□□ 1.27
VPS53-211ENST00000571805 GRIK1P39086 918 aa22.98■■□□□ 1.27
VPS53-211ENST00000571805 PKNOX1P55347 436 aa22.98■■□□□ 1.27
VPS53-211ENST00000571805 TSPY1Q01534 308 aa22.98■■□□□ 1.27
VPS53-211ENST00000571805 DSC3Q14574 896 aa22.98■■□□□ 1.27
VPS53-211ENST00000571805 RFTN1Q14699 578 aaPredicted RBP22.98■■□□□ 1.27
VPS53-211ENST00000571805 PCSK7Q16549 785 aa22.98■■□□□ 1.27
VPS53-211ENST00000571805 TECRLQ5HYJ1 363 aa22.98■■□□□ 1.27
VPS53-211ENST00000571805 PELI3Q8N2H9 469 aa22.98■■□□□ 1.27
VPS53-211ENST00000571805 BTBD9Q96Q07 612 aa22.98■■□□□ 1.27
VPS53-211ENST00000571805 SLC25A51Q9H1U9 297 aa22.98■■□□□ 1.27
VPS53-211ENST00000571805 TBC1D30Q9Y2I9 924 aa22.98■■□□□ 1.27
VPS53-211ENST00000571805 A0A0U1RQF3 1178 aa22.97■■□□□ 1.27
VPS53-211ENST00000571805 CFLARO15519 480 aa22.97■■□□□ 1.27
VPS53-211ENST00000571805 ENO3P13929 434 aaPredicted RBP22.97■■□□□ 1.27
VPS53-211ENST00000571805 HNRNPLP14866 589 aaKnown RBP eCLIP22.97■■□□□ 1.27
VPS53-211ENST00000571805 KCNA5P22460 613 aa22.97■■□□□ 1.27
VPS53-211ENST00000571805 MSX2P35548 267 aaPredicted RBP22.97■■□□□ 1.27
VPS53-211ENST00000571805 RAB27AP51159 221 aa22.97■■□□□ 1.27
VPS53-211ENST00000571805 KPNA2P52292 529 aaKnown RBP22.97■■□□□ 1.27
VPS53-211ENST00000571805 SLC12A2P55011 1212 aa22.97■■□□□ 1.27
VPS53-211ENST00000571805 FLOT2Q14254 428 aa22.97■■□□□ 1.27
VPS53-211ENST00000571805 CSHL1Q14406 222 aa22.97■■□□□ 1.27
VPS53-211ENST00000571805 GRM2Q14416 872 aa22.97■■□□□ 1.27
VPS53-211ENST00000571805 SDCCAG8Q86SQ7 713 aaPredicted RBP22.97■■□□□ 1.27
VPS53-211ENST00000571805 SPATA2LQ8IUW3 424 aaPredicted RBP22.97■■□□□ 1.27
VPS53-211ENST00000571805 UPF1Q92900 1129 aaKnown RBP eCLIP22.97■■□□□ 1.27
VPS53-211ENST00000571805 SUSD3Q96L08 255 aa22.97■■□□□ 1.27
VPS53-211ENST00000571805 NDNQ99608 321 aa22.97■■□□□ 1.27
VPS53-211ENST00000571805 MIA3Q5JRA6 1907 aa22.97■■□□□ 1.27
VPS53-211ENST00000571805 A0A1W2PQH9 124 aa22.97■■□□□ 1.27
VPS53-211ENST00000571805 EME2A4GXA9 379 aaPredicted RBP22.97■■□□□ 1.27
VPS53-211ENST00000571805 HSPA1AP0DMV8 641 aaKnown RBP22.97■■□□□ 1.27
VPS53-211ENST00000571805 HSPA1BP0DMV9 641 aaKnown RBP22.97■■□□□ 1.27
VPS53-211ENST00000571805 LEPRP48357 1165 aaKnown RBP22.97■■□□□ 1.27
VPS53-211ENST00000571805 PFKPQ01813 784 aa22.97■■□□□ 1.27
VPS53-211ENST00000571805 SULT2A1Q06520 285 aa22.97■■□□□ 1.27
VPS53-211ENST00000571805 TAF1CQ15572 869 aaPredicted RBP22.97■■□□□ 1.27
VPS53-211ENST00000571805 GRAMD1BQ3KR37 738 aa22.97■■□□□ 1.27
VPS53-211ENST00000571805 MMEL1Q495T6 779 aa22.97■■□□□ 1.27
VPS53-211ENST00000571805 PIK3R6Q5UE93 754 aa22.97■■□□□ 1.27
VPS53-211ENST00000571805 SLC30A9Q6PML9 568 aa22.97■■□□□ 1.27
VPS53-211ENST00000571805 C17orf99Q6UX52 265 aa22.97■■□□□ 1.27
VPS53-211ENST00000571805 CEP70Q8NHQ1 597 aa22.97■■□□□ 1.27
VPS53-211ENST00000571805 USP13Q92995 863 aaPredicted RBP22.97■■□□□ 1.27
VPS53-211ENST00000571805 C1orf74Q96LT6 269 aa22.97■■□□□ 1.27
VPS53-211ENST00000571805 HEATR9A2RTY3 570 aa22.96■■□□□ 1.27
VPS53-211ENST00000571805 STX16-NPEPL1H3BU86 382 aa22.96■■□□□ 1.27
VPS53-211ENST00000571805 SATB1Q01826 763 aa22.96■■□□□ 1.27
VPS53-211ENST00000571805 FBXL19Q6PCT2 694 aa22.96■■□□□ 1.27
VPS53-211ENST00000571805 ICA1LQ8NDH6 482 aa22.96■■□□□ 1.27
VPS53-211ENST00000571805 IMP4Q96G21 291 aaKnown RBP22.96■■□□□ 1.27
VPS53-211ENST00000571805 DTNAQ9Y4J8 743 aa22.96■■□□□ 1.27
VPS53-211ENST00000571805 MYO16Q9Y6X6 1858 aa22.96■■□□□ 1.27
VPS53-211ENST00000571805 CAPN8A6NHC0 703 aa22.96■■□□□ 1.27
VPS53-211ENST00000571805 MRPS22P82650 360 aaKnown RBP22.96■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms