RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 ANKRD20A4Q4UJ75 823 aa8.06□□□□□ -1.12
VPS39-213ENST00000570062 PPP2R2DQ66LE6 453 aa8.06□□□□□ -1.12
VPS39-213ENST00000570062 KDELC1Q6UW63 502 aa8.06□□□□□ -1.12
VPS39-213ENST00000570062 OTOP3Q7RTS5 596 aa8.06□□□□□ -1.12
VPS39-213ENST00000570062 TRIM42Q8IWZ5 723 aa8.06□□□□□ -1.12
VPS39-213ENST00000570062 TP53INP2Q8IXH6 220 aa8.06□□□□□ -1.12
VPS39-213ENST00000570062 CFAP52Q8N1V2 620 aa8.06□□□□□ -1.12
VPS39-213ENST00000570062 CARNMT1Q8N4J0 409 aa8.06□□□□□ -1.12
VPS39-213ENST00000570062 SH2D3CQ8N5H7 860 aa8.06□□□□□ -1.12
VPS39-213ENST00000570062 EFHBQ8N7U6 833 aa8.06□□□□□ -1.12
VPS39-213ENST00000570062 PPM1NQ8N819 430 aa8.06□□□□□ -1.12
VPS39-213ENST00000570062 IPMKQ8NFU5 416 aa8.06□□□□□ -1.12
VPS39-213ENST00000570062 VN1R2Q8NFZ6 395 aa8.06□□□□□ -1.12
VPS39-213ENST00000570062 SHKBP1Q8TBC3 707 aa8.06□□□□□ -1.12
VPS39-213ENST00000570062 SH3RF2Q8TEC5 729 aa8.06□□□□□ -1.12
VPS39-213ENST00000570062 USP33Q8TEY7 942 aa8.06□□□□□ -1.12
VPS39-213ENST00000570062 DCAKDQ8WVC6 231 aa8.06□□□□□ -1.12
VPS39-213ENST00000570062 DYDC1Q8WWB3 177 aa8.06□□□□□ -1.12
VPS39-213ENST00000570062 ARNTL2Q8WYA1 636 aa8.06□□□□□ -1.12
VPS39-213ENST00000570062 ISG20Q96AZ6 181 aaKnown RBP8.06□□□□□ -1.12
VPS39-213ENST00000570062 CERS2Q96G23 380 aa8.06□□□□□ -1.12
VPS39-213ENST00000570062 OXNAD1Q96HP4 312 aaPredicted RBP8.06□□□□□ -1.12
VPS39-213ENST00000570062 PRICKLE1Q96MT3 831 aaPredicted RBP8.06□□□□□ -1.12
VPS39-213ENST00000570062 CYP2S1Q96SQ9 504 aa8.06□□□□□ -1.12
VPS39-213ENST00000570062 SELENOSQ9BQE4 189 aa8.06□□□□□ -1.12
VPS39-213ENST00000570062 FEM1AQ9BSK4 669 aa8.06□□□□□ -1.12
VPS39-213ENST00000570062 FAM167BQ9BTA0 163 aa8.06□□□□□ -1.12
VPS39-213ENST00000570062 CEP41Q9BYV8 373 aa8.06□□□□□ -1.12
VPS39-213ENST00000570062 CEP44Q9C0F1 390 aa8.06□□□□□ -1.12
VPS39-213ENST00000570062 IQCGQ9H095 443 aaKnown RBP8.06□□□□□ -1.12
VPS39-213ENST00000570062 NSRP1Q9H0G5 558 aaKnown RBP8.06□□□□□ -1.12
VPS39-213ENST00000570062 TRABDQ9H4I3 376 aa8.06□□□□□ -1.12
VPS39-213ENST00000570062 KCNK9Q9NPC2 374 aa8.06□□□□□ -1.12
VPS39-213ENST00000570062 PPANQ9NQ55 473 aaKnown RBP8.06□□□□□ -1.12
VPS39-213ENST00000570062 MKS1Q9NXB0 559 aa8.06□□□□□ -1.12
VPS39-213ENST00000570062 GDE1Q9NZC3 331 aa8.06□□□□□ -1.12
VPS39-213ENST00000570062 MARK1Q9P0L2 795 aa8.06□□□□□ -1.12
VPS39-213ENST00000570062 MAP10Q9P2G4 905 aa8.06□□□□□ -1.12
VPS39-213ENST00000570062 DNMT3BQ9UBC3 853 aaKnown RBP8.06□□□□□ -1.12
VPS39-213ENST00000570062 GMNCA6NCL1 334 aa8.05□□□□□ -1.12
VPS39-213ENST00000570062 CBX4O00257 560 aa8.05□□□□□ -1.12
VPS39-213ENST00000570062 SLC7A4O43246 635 aa8.05□□□□□ -1.12
VPS39-213ENST00000570062 ATP9BO43861 1147 aa8.05□□□□□ -1.12
VPS39-213ENST00000570062 TSPAN3O60637 253 aa8.05□□□□□ -1.12
VPS39-213ENST00000570062 PMPCBO75439 489 aa8.05□□□□□ -1.12
VPS39-213ENST00000570062 F12P00748 615 aaPredicted RBP8.05□□□□□ -1.12
VPS39-213ENST00000570062 PENKP01210 267 aaPredicted RBP8.05□□□□□ -1.12
VPS39-213ENST00000570062 EPCAMP16422 314 aa8.05□□□□□ -1.12
VPS39-213ENST00000570062 HOXD9P28356 352 aaPredicted RBP8.05□□□□□ -1.12
VPS39-213ENST00000570062 PLA2G5P39877 138 aa8.05□□□□□ -1.12
VPS39-213ENST00000570062 CD86P42081 329 aa8.05□□□□□ -1.12
VPS39-213ENST00000570062 GAD2Q05329 585 aa8.05□□□□□ -1.12
VPS39-213ENST00000570062 CAMK1Q14012 370 aa8.05□□□□□ -1.12
VPS39-213ENST00000570062 SPARCL1Q14515 664 aa8.05□□□□□ -1.12
VPS39-213ENST00000570062 TEAD2Q15562 447 aa8.05□□□□□ -1.12
VPS39-213ENST00000570062 SLC1A5Q15758 541 aa8.05□□□□□ -1.12
VPS39-213ENST00000570062 INSCQ1MX18 579 aa8.05□□□□□ -1.12
VPS39-213ENST00000570062 PRSS36Q5K4E3 855 aa8.05□□□□□ -1.12
VPS39-213ENST00000570062 HP1BP3Q5SSJ5 553 aaPredicted RBP8.05□□□□□ -1.12
VPS39-213ENST00000570062 C9orf50Q5SZB4 431 aa8.05□□□□□ -1.12
VPS39-213ENST00000570062 KIAA0930Q6ICG6 404 aaPredicted RBP8.05□□□□□ -1.12
VPS39-213ENST00000570062 CXorf57Q6NSI4 855 aaKnown RBP8.05□□□□□ -1.12
VPS39-213ENST00000570062 ARHGAP36Q6ZRI8 547 aa8.05□□□□□ -1.12
VPS39-213ENST00000570062 CAPN12Q6ZSI9 719 aa8.05□□□□□ -1.12
VPS39-213ENST00000570062 GALNT7Q86SF2 657 aa8.05□□□□□ -1.12
VPS39-213ENST00000570062 PRPF39Q86UA1 669 aaKnown RBP8.05□□□□□ -1.12
VPS39-213ENST00000570062 IGDCC3Q8IVU1 814 aa8.05□□□□□ -1.12
VPS39-213ENST00000570062 SRRM1Q8IYB3 904 aaKnown RBP8.05□□□□□ -1.12
VPS39-213ENST00000570062 ARRDC2Q8TBH0 407 aa8.05□□□□□ -1.12
VPS39-213ENST00000570062 BRSK1Q8TDC3 778 aa8.05□□□□□ -1.12
VPS39-213ENST00000570062 ADAMTS19Q8TE59 1207 aa8.05□□□□□ -1.12
VPS39-213ENST00000570062 WFIKKN2Q8TEU8 576 aa8.05□□□□□ -1.12
VPS39-213ENST00000570062 STYXQ8WUJ0 223 aa8.05□□□□□ -1.12
VPS39-213ENST00000570062 SREK1Q8WXA9 508 aaKnown RBP8.05□□□□□ -1.12
VPS39-213ENST00000570062 SMG7Q92540 1137 aaKnown RBP8.05□□□□□ -1.12
VPS39-213ENST00000570062 ZNF669Q96BR6 464 aaPredicted RBP8.05□□□□□ -1.12
VPS39-213ENST00000570062 GRAMD1AQ96CP6 724 aa8.05□□□□□ -1.12
VPS39-213ENST00000570062 MRPL38Q96DV4 380 aaKnown RBP8.05□□□□□ -1.12
VPS39-213ENST00000570062 SEMA3CQ99985 751 aa8.05□□□□□ -1.12
VPS39-213ENST00000570062 GDF15Q99988 308 aa8.05□□□□□ -1.12
VPS39-213ENST00000570062 PLCD4Q9BRC7 762 aa8.05□□□□□ -1.12
VPS39-213ENST00000570062 FICDQ9BVA6 458 aa8.05□□□□□ -1.12
VPS39-213ENST00000570062 EPN3Q9H201 632 aa8.05□□□□□ -1.12
VPS39-213ENST00000570062 ZFAND3Q9H8U3 227 aa8.05□□□□□ -1.12
VPS39-213ENST00000570062 ABCB8Q9NUT2 735 aa8.05□□□□□ -1.12
VPS39-213ENST00000570062 SYBUQ9NX95 663 aa8.05□□□□□ -1.12
VPS39-213ENST00000570062 TBK1Q9UHD2 729 aa8.05□□□□□ -1.12
VPS39-213ENST00000570062 DCDC2Q9UHG0 476 aa8.05□□□□□ -1.12
VPS39-213ENST00000570062 SLC25A13Q9UJS0 675 aa8.05□□□□□ -1.12
VPS39-213ENST00000570062 MID2Q9UJV3 735 aa8.05□□□□□ -1.12
VPS39-213ENST00000570062 CORO1CQ9ULV4 474 aaPredicted RBP8.05□□□□□ -1.12
VPS39-213ENST00000570062 TCAF1Q9Y4C2 921 aa8.05□□□□□ -1.12
VPS39-213ENST00000570062 OR51B4Q9Y5P0 310 aa8.05□□□□□ -1.12
VPS39-213ENST00000570062 CACNA1AO00555 2505 aa8.04□□□□□ -1.12
VPS39-213ENST00000570062 A0A0D9SEW6 157 aa8.04□□□□□ -1.12
VPS39-213ENST00000570062 TMEM120BA0PK00 339 aa8.04□□□□□ -1.12
VPS39-213ENST00000570062 C2orf81A6NN90 581 aa8.04□□□□□ -1.12
VPS39-213ENST00000570062 MAN1A2O60476 641 aa8.04□□□□□ -1.12
VPS39-213ENST00000570062 SOCS5O75159 536 aa8.04□□□□□ -1.12
VPS39-213ENST00000570062 SIN3BO75182 1162 aa8.04□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms