RNA–Protein interactions for RNA: ENST00000568232.1

CLK3-222, Transcript of CDC like kinase 3, human

Gene CLK3, Length 958 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLK3-222	ENST00000568232	ZDHHC6	Q9H6R6	413 aa		11.93	□□□□□ -0.5
CLK3-222	ENST00000568232	FAM204A	Q9H8W3	233 aa		11.93	□□□□□ -0.5
CLK3-222	ENST00000568232	POPDC2	Q9HBU9	364 aa		11.93	□□□□□ -0.5
CLK3-222	ENST00000568232	PPP4R2	Q9NY27	417 aa		11.93	□□□□□ -0.5
CLK3-222	ENST00000568232	LRIT1	Q9P2V4	623 aa		11.93	□□□□□ -0.5
CLK3-222	ENST00000568232	VPS4A	Q9UN37	437 aa		11.93	□□□□□ -0.5
CLK3-222	ENST00000568232	PCDHB4	Q9Y5E5	795 aa		11.93	□□□□□ -0.5
CLK3-222	ENST00000568232	B3GALT1	Q9Y5Z6	326 aa		11.93	□□□□□ -0.5
CLK3-222	ENST00000568232	ACTL7A	Q9Y615	435 aa		11.93	□□□□□ -0.5
CLK3-222	ENST00000568232	C16orf96	A6NNT2	1141 aa		11.92	□□□□□ -0.5
CLK3-222	ENST00000568232	B4GAT1	O43505	415 aa		11.92	□□□□□ -0.5
CLK3-222	ENST00000568232	ACTN4	O43707	911 aa	Known RBP	11.92	□□□□□ -0.5
CLK3-222	ENST00000568232	RAD1	O60671	282 aa		11.92	□□□□□ -0.5
CLK3-222	ENST00000568232	MMP20	O60882	483 aa		11.92	□□□□□ -0.5
CLK3-222	ENST00000568232	ADCY5	O95622	1261 aa		11.92	□□□□□ -0.5
CLK3-222	ENST00000568232	ITIH2	P19823	946 aa		11.92	□□□□□ -0.5
CLK3-222	ENST00000568232	RPL13	P26373	211 aa	Known RBP	11.92	□□□□□ -0.5
CLK3-222	ENST00000568232	GPD2	P43304	727 aa		11.92	□□□□□ -0.5
CLK3-222	ENST00000568232	BLK	P51451	505 aa		11.92	□□□□□ -0.5
CLK3-222	ENST00000568232	CDH4	P55283	916 aa		11.92	□□□□□ -0.5
CLK3-222	ENST00000568232	YWHAZ	P63104	245 aa	Known RBP	11.92	□□□□□ -0.5
CLK3-222	ENST00000568232	B4GALNT1	Q00973	533 aa		11.92	□□□□□ -0.5
CLK3-222	ENST00000568232	CDC20	Q12834	499 aa		11.92	□□□□□ -0.5
CLK3-222	ENST00000568232	ARHGEF7	Q14155	803 aa		11.92	□□□□□ -0.5
CLK3-222	ENST00000568232	AMZ1	Q400G9	498 aa		11.92	□□□□□ -0.5
CLK3-222	ENST00000568232	MAP9	Q49MG5	647 aa		11.92	□□□□□ -0.5
CLK3-222	ENST00000568232	CARD16	Q5EG05	197 aa		11.92	□□□□□ -0.5
CLK3-222	ENST00000568232	ENPP7	Q6UWV6	458 aa		11.92	□□□□□ -0.5
CLK3-222	ENST00000568232	CEP57L1	Q8IYX8	460 aa		11.92	□□□□□ -0.5
CLK3-222	ENST00000568232	UNC5B	Q8IZJ1	945 aa		11.92	□□□□□ -0.5
CLK3-222	ENST00000568232	TEX19	Q8NA77	164 aa		11.92	□□□□□ -0.5
CLK3-222	ENST00000568232	TP53I13	Q8NBR0	393 aa	Predicted RBP	11.92	□□□□□ -0.5
CLK3-222	ENST00000568232	OR7D4	Q8NG98	312 aa		11.92	□□□□□ -0.5
CLK3-222	ENST00000568232	OR6K2	Q8NGY2	324 aa		11.92	□□□□□ -0.5
CLK3-222	ENST00000568232	APOBEC4	Q8WW27	367 aa	Known RBP	11.92	□□□□□ -0.5
CLK3-222	ENST00000568232	KAT5	Q92993	513 aa		11.92	□□□□□ -0.5
CLK3-222	ENST00000568232	SLC45A3	Q96JT2	553 aa		11.92	□□□□□ -0.5
CLK3-222	ENST00000568232	NUDT22	Q9BRQ3	303 aa		11.92	□□□□□ -0.5
CLK3-222	ENST00000568232	ZNF768	Q9H5H4	540 aa	Known RBP	11.92	□□□□□ -0.5
CLK3-222	ENST00000568232	DDIT4	Q9NX09	232 aa		11.92	□□□□□ -0.5
CLK3-222	ENST00000568232	AKAP7	Q9P0M2	348 aa	Predicted RBP	11.92	□□□□□ -0.5
CLK3-222	ENST00000568232	FCF1	Q9Y324	198 aa	Known RBP	11.92	□□□□□ -0.5
CLK3-222	ENST00000568232	COQ4	Q9Y3A0	265 aa		11.92	□□□□□ -0.5
CLK3-222	ENST00000568232	SNX10	Q9Y5X0	201 aa		11.92	□□□□□ -0.5
CLK3-222	ENST00000568232		E5RJQ4	531 aa		11.91	□□□□□ -0.5
CLK3-222	ENST00000568232	SART1	O43290	800 aa	Known RBP	11.91	□□□□□ -0.5
CLK3-222	ENST00000568232	PAGE1	O75459	146 aa		11.91	□□□□□ -0.5
CLK3-222	ENST00000568232	RASGRP1	O95267	797 aa		11.91	□□□□□ -0.5
CLK3-222	ENST00000568232	CLDN1	O95832	211 aa		11.91	□□□□□ -0.5
CLK3-222	ENST00000568232	SLC2A3	P11169	496 aa		11.91	□□□□□ -0.5
CLK3-222	ENST00000568232	ELAVL4	P26378	380 aa	Known RBP	11.91	□□□□□ -0.5
CLK3-222	ENST00000568232	OR1D5	P58170	312 aa		11.91	□□□□□ -0.5
CLK3-222	ENST00000568232	SRP54	P61011	504 aa	Known RBP	11.91	□□□□□ -0.5
CLK3-222	ENST00000568232	CUL4A	Q13619	759 aa		11.91	□□□□□ -0.5
CLK3-222	ENST00000568232	IRF4	Q15306	451 aa		11.91	□□□□□ -0.5
CLK3-222	ENST00000568232	KLHL40	Q2TBA0	621 aa		11.91	□□□□□ -0.5
CLK3-222	ENST00000568232	C8orf34	Q49A92	452 aa		11.91	□□□□□ -0.5
CLK3-222	ENST00000568232	C5orf22	Q49AR2	442 aa		11.91	□□□□□ -0.5
CLK3-222	ENST00000568232	DCAF17	Q5H9S7	520 aa	Predicted RBP	11.91	□□□□□ -0.5
CLK3-222	ENST00000568232	TCERG1L	Q5VWI1	586 aa		11.91	□□□□□ -0.5
CLK3-222	ENST00000568232	RESP18	Q5W5W9	173 aa		11.91	□□□□□ -0.5
CLK3-222	ENST00000568232	DENND1B	Q6P3S1	775 aa		11.91	□□□□□ -0.5
CLK3-222	ENST00000568232	OGFOD3	Q6PK18	319 aa		11.91	□□□□□ -0.5
CLK3-222	ENST00000568232	TFAP2D	Q7Z6R9	452 aa		11.91	□□□□□ -0.5
CLK3-222	ENST00000568232	PIM3	Q86V86	326 aa		11.91	□□□□□ -0.5
CLK3-222	ENST00000568232	ZSCAN30	Q86W11	494 aa		11.91	□□□□□ -0.5
CLK3-222	ENST00000568232	HEATR4	Q86WZ0	1026 aa		11.91	□□□□□ -0.5
CLK3-222	ENST00000568232	TICAM1	Q8IUC6	712 aa		11.91	□□□□□ -0.5
CLK3-222	ENST00000568232	DEFB106A	Q8N104	65 aa		11.91	□□□□□ -0.5
CLK3-222	ENST00000568232	DCAF4L2	Q8NA75	395 aa		11.91	□□□□□ -0.5
CLK3-222	ENST00000568232	FAM46D	Q8NEK8	389 aa		11.91	□□□□□ -0.5
CLK3-222	ENST00000568232	ART4	Q93070	314 aa		11.91	□□□□□ -0.5
CLK3-222	ENST00000568232	SPON2	Q9BUD6	331 aa		11.91	□□□□□ -0.5
CLK3-222	ENST00000568232	TM6SF2	Q9BZW4	377 aa		11.91	□□□□□ -0.5
CLK3-222	ENST00000568232	FAM13B	Q9NYF5	915 aa		11.91	□□□□□ -0.5
CLK3-222	ENST00000568232	HECA	Q9UBI9	543 aa	Predicted RBP	11.91	□□□□□ -0.5
CLK3-222	ENST00000568232	PCDHGA3	Q9Y5H0	932 aa		11.91	□□□□□ -0.5
CLK3-222	ENST00000568232	IGHV5-10-1	A0A0J9YXX1	117 aa		11.9	□□□□□ -0.5
CLK3-222	ENST00000568232	LOC101059948	A0A1B0GTJ6	334 aa		11.9	□□□□□ -0.5
CLK3-222	ENST00000568232	EFCAB7	A8K855	629 aa		11.9	□□□□□ -0.5
CLK3-222	ENST00000568232		B4DGG1	531 aa		11.9	□□□□□ -0.5
CLK3-222	ENST00000568232	AREL1	O15033	823 aa		11.9	□□□□□ -0.5
CLK3-222	ENST00000568232	STX10	O60499	249 aa		11.9	□□□□□ -0.5
CLK3-222	ENST00000568232	ZMPSTE24	O75844	475 aa		11.9	□□□□□ -0.5
CLK3-222	ENST00000568232	TM7SF2	O76062	418 aa		11.9	□□□□□ -0.5
CLK3-222	ENST00000568232	YEATS4	O95619	227 aa		11.9	□□□□□ -0.5
CLK3-222	ENST00000568232	CPNE6	O95741	557 aa		11.9	□□□□□ -0.5
CLK3-222	ENST00000568232	PNLIP	P16233	465 aa		11.9	□□□□□ -0.5
CLK3-222	ENST00000568232	MPST	P25325	297 aa		11.9	□□□□□ -0.5
CLK3-222	ENST00000568232	SERPINH1	P50454	418 aa	Known RBP	11.9	□□□□□ -0.5
CLK3-222	ENST00000568232	CDK17	Q00537	523 aa		11.9	□□□□□ -0.5
CLK3-222	ENST00000568232	NME3	Q13232	169 aa		11.9	□□□□□ -0.5
CLK3-222	ENST00000568232	HLTF	Q14527	1009 aa	Known RBP eCLIP	11.9	□□□□□ -0.5
CLK3-222	ENST00000568232	STIL	Q15468	1287 aa		11.9	□□□□□ -0.5
CLK3-222	ENST00000568232	FOXD4L6	Q3SYB3	417 aa	Predicted RBP	11.9	□□□□□ -0.5
CLK3-222	ENST00000568232	C14orf28	Q4W4Y0	310 aa		11.9	□□□□□ -0.5
CLK3-222	ENST00000568232	ZCWPW2	Q504Y3	356 aa		11.9	□□□□□ -0.5
CLK3-222	ENST00000568232	C16orf46	Q6P387	395 aa		11.9	□□□□□ -0.5
CLK3-222	ENST00000568232	FOXD4L3	Q6VB84	417 aa	Predicted RBP	11.9	□□□□□ -0.5
CLK3-222	ENST00000568232	RYBP	Q8N488	228 aa	Predicted RBP	11.9	□□□□□ -0.5

Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms