RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 SPPL2BQ8TCT7 592 aa13.33□□□□□ -0.27
CLN3-210ENST00000563874 TMEM40Q8WWA1 233 aa13.33□□□□□ -0.27
CLN3-210ENST00000563874 ABTB1Q969K4 478 aaPredicted RBP13.33□□□□□ -0.27
CLN3-210ENST00000563874 FICDQ9BVA6 458 aa13.33□□□□□ -0.27
CLN3-210ENST00000563874 COLEC11Q9BWP8 271 aa13.33□□□□□ -0.27
CLN3-210ENST00000563874 GDAP2Q9NXN4 497 aa13.33□□□□□ -0.27
CLN3-210ENST00000563874 PLXNA1Q9UIW2 1896 aa13.33□□□□□ -0.27
CLN3-210ENST00000563874 TRPC5OSA6NMA1 111 aa13.33□□□□□ -0.28
CLN3-210ENST00000563874 PDLIM1O00151 329 aa13.33□□□□□ -0.28
CLN3-210ENST00000563874 PSMD12O00232 456 aaPredicted RBP13.33□□□□□ -0.28
CLN3-210ENST00000563874 NCAM2O15394 837 aa13.33□□□□□ -0.28
CLN3-210ENST00000563874 PMPCBO75439 489 aa13.33□□□□□ -0.28
CLN3-210ENST00000563874 CYP2C9P11712 490 aa13.33□□□□□ -0.28
CLN3-210ENST00000563874 YWHAQP27348 245 aa13.33□□□□□ -0.28
CLN3-210ENST00000563874 HADHAP40939 763 aa13.33□□□□□ -0.28
CLN3-210ENST00000563874 ZNF789Q5FWF6 425 aa13.33□□□□□ -0.28
CLN3-210ENST00000563874 NOMO2Q5JPE7 1267 aa13.33□□□□□ -0.28
CLN3-210ENST00000563874 PKN3Q6P5Z2 889 aa13.33□□□□□ -0.28
CLN3-210ENST00000563874 ARRDC4Q8NCT1 418 aa13.33□□□□□ -0.28
CLN3-210ENST00000563874 DIS3LQ8TF46 1054 aaKnown RBP13.33□□□□□ -0.28
CLN3-210ENST00000563874 GAB3Q8WWW8 586 aa13.33□□□□□ -0.28
CLN3-210ENST00000563874 RNF34Q969K3 372 aa13.33□□□□□ -0.28
CLN3-210ENST00000563874 WDCPQ9H6R7 721 aa13.33□□□□□ -0.28
CLN3-210ENST00000563874 IL1RL2Q9HB29 575 aa13.33□□□□□ -0.28
CLN3-210ENST00000563874 FBRSL1Q9HCM7 1045 aaKnown RBP13.33□□□□□ -0.28
CLN3-210ENST00000563874 ZNF839A8K0R7 811 aa13.33□□□□□ -0.28
CLN3-210ENST00000563874 UBDO15205 165 aa13.33□□□□□ -0.28
CLN3-210ENST00000563874 DAOAP59103 153 aa13.33□□□□□ -0.28
CLN3-210ENST00000563874 TMED1Q13445 227 aa13.33□□□□□ -0.28
CLN3-210ENST00000563874 CLEC6AQ6EIG7 209 aa13.33□□□□□ -0.28
CLN3-210ENST00000563874 PELI3Q8N2H9 469 aa13.33□□□□□ -0.28
CLN3-210ENST00000563874 MAELQ96JY0 434 aaKnown RBP13.33□□□□□ -0.28
CLN3-210ENST00000563874 ZFP42Q96MM3 310 aa13.33□□□□□ -0.28
CLN3-210ENST00000563874 SPON1Q9HCB6 807 aa13.33□□□□□ -0.28
CLN3-210ENST00000563874 PPP2R3BQ9Y5P8 575 aa13.33□□□□□ -0.28
CLN3-210ENST00000563874 A0A0J9YVX5 310 aa13.32□□□□□ -0.28
CLN3-210ENST00000563874 HEATR9A2RTY3 570 aa13.32□□□□□ -0.28
CLN3-210ENST00000563874 C9JVG2 144 aa13.32□□□□□ -0.28
CLN3-210ENST00000563874 MAGEB3O15480 346 aa13.32□□□□□ -0.28
CLN3-210ENST00000563874 GPR32O75388 356 aa13.32□□□□□ -0.28
CLN3-210ENST00000563874 GPC4O75487 556 aa13.32□□□□□ -0.28
CLN3-210ENST00000563874 HK2P52789 917 aa13.32□□□□□ -0.28
CLN3-210ENST00000563874 NDST2P52849 883 aa13.32□□□□□ -0.28
CLN3-210ENST00000563874 PRKAA2P54646 552 aa13.32□□□□□ -0.28
CLN3-210ENST00000563874 SLC12A2P55011 1212 aa13.32□□□□□ -0.28
CLN3-210ENST00000563874 RHDQ02161 417 aa13.32□□□□□ -0.28
CLN3-210ENST00000563874 LRP8Q14114 963 aa13.32□□□□□ -0.28
CLN3-210ENST00000563874 USP41Q3LFD5 358 aa13.32□□□□□ -0.28
CLN3-210ENST00000563874 PCID2Q5JVF3 399 aa13.32□□□□□ -0.28
CLN3-210ENST00000563874 NRCAMQ92823 1304 aa13.32□□□□□ -0.28
CLN3-210ENST00000563874 ZNF597Q96LX8 424 aa13.32□□□□□ -0.28
CLN3-210ENST00000563874 TBL1YQ9BQ87 522 aa13.32□□□□□ -0.28
CLN3-210ENST00000563874 UNC93B1Q9H1C4 597 aa13.32□□□□□ -0.28
CLN3-210ENST00000563874 TNS1Q9HBL0 1735 aaKnown RBP13.32□□□□□ -0.28
CLN3-210ENST00000563874 CRTAC1Q9NQ79 661 aa13.32□□□□□ -0.28
CLN3-210ENST00000563874 SFMBT1Q9UHJ3 866 aa13.32□□□□□ -0.28
CLN3-210ENST00000563874 MTSS1O43312 755 aa13.32□□□□□ -0.28
CLN3-210ENST00000563874 H6PDO95479 791 aa13.32□□□□□ -0.28
CLN3-210ENST00000563874 CAPNS1P04632 268 aa13.32□□□□□ -0.28
CLN3-210ENST00000563874 ARL13BQ3SXY8 428 aa13.32□□□□□ -0.28
CLN3-210ENST00000563874 SV2CQ496J9 727 aa13.32□□□□□ -0.28
CLN3-210ENST00000563874 HMBOX1Q6NT76 420 aa13.32□□□□□ -0.28
CLN3-210ENST00000563874 LPCAT2Q7L5N7 544 aa13.32□□□□□ -0.28
CLN3-210ENST00000563874 PIWIL4Q7Z3Z4 852 aaKnown RBP13.32□□□□□ -0.28
CLN3-210ENST00000563874 NTAN1Q96AB6 310 aa13.32□□□□□ -0.28
CLN3-210ENST00000563874 SMOQ99835 787 aa13.32□□□□□ -0.28
CLN3-210ENST00000563874 DNAI2Q9GZS0 605 aa13.32□□□□□ -0.28
CLN3-210ENST00000563874 NSMCE4AQ9NXX6 385 aa13.32□□□□□ -0.28
CLN3-210ENST00000563874 SUCOQ9UBS9 1254 aaKnown RBP13.32□□□□□ -0.28
CLN3-210ENST00000563874 RSL24D1Q9UHA3 163 aaKnown RBP13.32□□□□□ -0.28
CLN3-210ENST00000563874 MTF2Q9Y483 593 aaPredicted RBP13.32□□□□□ -0.28
CLN3-210ENST00000563874 MYBPHLA2RUH7 354 aa13.31□□□□□ -0.28
CLN3-210ENST00000563874 TPST1O60507 370 aa13.31□□□□□ -0.28
CLN3-210ENST00000563874 HSPA1AP0DMV8 641 aaKnown RBP13.31□□□□□ -0.28
CLN3-210ENST00000563874 HSPA1BP0DMV9 641 aaKnown RBP13.31□□□□□ -0.28
CLN3-210ENST00000563874 NAT1P18440 290 aa13.31□□□□□ -0.28
CLN3-210ENST00000563874 UGT1A6P19224 532 aa13.31□□□□□ -0.28
CLN3-210ENST00000563874 ARCN1P48444 511 aaKnown RBP13.31□□□□□ -0.28
CLN3-210ENST00000563874 SLC7A2P52569 658 aa13.31□□□□□ -0.28
CLN3-210ENST00000563874 STX5Q13190 355 aa13.31□□□□□ -0.28
CLN3-210ENST00000563874 UGP2Q16851 508 aa13.31□□□□□ -0.28
CLN3-210ENST00000563874 KLC3Q6P597 504 aa13.31□□□□□ -0.28
CLN3-210ENST00000563874 CUZD1Q86UP6 607 aa13.31□□□□□ -0.28
CLN3-210ENST00000563874 FAM47BQ8NA70 645 aa13.31□□□□□ -0.28
CLN3-210ENST00000563874 SLC9A7Q96T83 725 aa13.31□□□□□ -0.28
CLN3-210ENST00000563874 MRPL57Q9BQC6 102 aaKnown RBP13.31□□□□□ -0.28
CLN3-210ENST00000563874 SPAG4Q9NPE6 437 aa13.31□□□□□ -0.28
CLN3-210ENST00000563874 OLAHQ9NV23 265 aa13.31□□□□□ -0.28
CLN3-210ENST00000563874 CNOT6Q9ULM6 557 aaKnown RBP13.31□□□□□ -0.28
CLN3-210ENST00000563874 COL1A2P08123 1366 aa13.31□□□□□ -0.28
CLN3-210ENST00000563874 FAM149AA5PLN7 773 aa13.31□□□□□ -0.28
CLN3-210ENST00000563874 SAC3D1A6NKF1 404 aa13.31□□□□□ -0.28
CLN3-210ENST00000563874 MRASO14807 208 aa13.31□□□□□ -0.28
CLN3-210ENST00000563874 AKAP10O43572 662 aa13.31□□□□□ -0.28
CLN3-210ENST00000563874 C8BP07358 591 aa13.31□□□□□ -0.28
CLN3-210ENST00000563874 ATP5F1P24539 256 aaPredicted RBP13.31□□□□□ -0.28
CLN3-210ENST00000563874 GRIA3P42263 894 aa13.31□□□□□ -0.28
CLN3-210ENST00000563874 PCSK7Q16549 785 aa13.31□□□□□ -0.28
CLN3-210ENST00000563874 C6orf10Q5SRN2 563 aa13.31□□□□□ -0.28
CLN3-210ENST00000563874 ZBTB49Q6ZSB9 765 aa13.31□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms