RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 PIAS3Q9Y6X2 628 aa9.33□□□□□ -0.92
VPS39-205ENST00000562258 ARHGAP10A1A4S6 786 aa9.32□□□□□ -0.92
VPS39-205ENST00000562258 STC2O76061 302 aa9.32□□□□□ -0.92
VPS39-205ENST00000562258 HOXB8P17481 243 aaPredicted RBP9.32□□□□□ -0.92
VPS39-205ENST00000562258 HNF4AP41235 474 aa9.32□□□□□ -0.92
VPS39-205ENST00000562258 ADAM17P78536 824 aa9.32□□□□□ -0.92
VPS39-205ENST00000562258 ZBTB6Q15916 424 aa9.32□□□□□ -0.92
VPS39-205ENST00000562258 TTC39BQ5VTQ0 682 aaPredicted RBP9.32□□□□□ -0.92
VPS39-205ENST00000562258 Q7L0L9 218 aa9.32□□□□□ -0.92
VPS39-205ENST00000562258 HID1Q8IV36 788 aa9.32□□□□□ -0.92
VPS39-205ENST00000562258 LINC01599Q8WXQ3 324 aa9.32□□□□□ -0.92
VPS39-205ENST00000562258 ARL8AQ96BM9 186 aa9.32□□□□□ -0.92
VPS39-205ENST00000562258 COPS8Q99627 209 aa9.32□□□□□ -0.92
VPS39-205ENST00000562258 IL22Q9GZX6 179 aa9.32□□□□□ -0.92
VPS39-205ENST00000562258 CATSPERZQ9NTU4 200 aa9.32□□□□□ -0.92
VPS39-205ENST00000562258 NSMCE4AQ9NXX6 385 aa9.32□□□□□ -0.92
VPS39-205ENST00000562258 SENP1Q9P0U3 644 aa9.32□□□□□ -0.92
VPS39-205ENST00000562258 GGA2Q9UJY4 613 aa9.32□□□□□ -0.92
VPS39-205ENST00000562258 GMEB2Q9UKD1 530 aa9.32□□□□□ -0.92
VPS39-205ENST00000562258 RAD54BQ9Y620 910 aa9.32□□□□□ -0.92
VPS39-205ENST00000562258 CACNB4O00305 520 aaPredicted RBP9.32□□□□□ -0.92
VPS39-205ENST00000562258 RASSF9O75901 435 aa9.32□□□□□ -0.92
VPS39-205ENST00000562258 STAU1O95793 577 aaKnown RBP9.32□□□□□ -0.92
VPS39-205ENST00000562258 PCCBP05166 539 aa9.32□□□□□ -0.92
VPS39-205ENST00000562258 PYGBP11216 843 aa9.32□□□□□ -0.92
VPS39-205ENST00000562258 MC4RP32245 332 aa9.32□□□□□ -0.92
VPS39-205ENST00000562258 RFX3P48380 749 aa9.32□□□□□ -0.92
VPS39-205ENST00000562258 SOX9P48436 509 aa9.32□□□□□ -0.92
VPS39-205ENST00000562258 DAB2P98082 770 aa9.32□□□□□ -0.92
VPS39-205ENST00000562258 MGAT3Q09327 533 aa9.32□□□□□ -0.92
VPS39-205ENST00000562258 STX3Q13277 289 aa9.32□□□□□ -0.92
VPS39-205ENST00000562258 UAP1L1Q3KQV9 507 aa9.32□□□□□ -0.92
VPS39-205ENST00000562258 FAM133BQ5BKY9 247 aaKnown RBP9.32□□□□□ -0.92
VPS39-205ENST00000562258 PCID2Q5JVF3 399 aa9.32□□□□□ -0.92
VPS39-205ENST00000562258 LVRNQ6Q4G3 990 aa9.32□□□□□ -0.92
VPS39-205ENST00000562258 SLC26A11Q86WA9 606 aa9.32□□□□□ -0.92
VPS39-205ENST00000562258 SHDQ96IW2 340 aa9.32□□□□□ -0.92
VPS39-205ENST00000562258 HAPLN3Q96S86 360 aa9.32□□□□□ -0.92
VPS39-205ENST00000562258 ZBTB18Q99592 522 aa9.32□□□□□ -0.92
VPS39-205ENST00000562258 SLC46A2Q9BY10 475 aa9.32□□□□□ -0.92
VPS39-205ENST00000562258 TPSD1Q9BZJ3 242 aa9.32□□□□□ -0.92
VPS39-205ENST00000562258 CNOT10Q9H9A5 744 aaKnown RBP9.32□□□□□ -0.92
VPS39-205ENST00000562258 COG4Q9H9E3 785 aa9.32□□□□□ -0.92
VPS39-205ENST00000562258 L2HGDHQ9H9P8 463 aa9.32□□□□□ -0.92
VPS39-205ENST00000562258 SPHK2Q9NRA0 654 aa9.32□□□□□ -0.92
VPS39-205ENST00000562258 SPASTQ9UBP0 616 aa9.32□□□□□ -0.92
VPS39-205ENST00000562258 CDH22Q9UJ99 828 aa9.32□□□□□ -0.92
VPS39-205ENST00000562258 C2orf71A6NGG8 1288 aa9.32□□□□□ -0.92
VPS39-205ENST00000562258 BTN3A1O00481 513 aa9.32□□□□□ -0.92
VPS39-205ENST00000562258 EIF2S1P05198 315 aaKnown RBP9.32□□□□□ -0.92
VPS39-205ENST00000562258 CEBPBP17676 345 aa9.32□□□□□ -0.92
VPS39-205ENST00000562258 CCNHP51946 323 aaPredicted RBP9.32□□□□□ -0.92
VPS39-205ENST00000562258 C21orf59P57076 290 aa9.32□□□□□ -0.92
VPS39-205ENST00000562258 HNRNPDQ14103 355 aaKnown RBP9.32□□□□□ -0.92
VPS39-205ENST00000562258 FAM26DQ5JW98 314 aa9.32□□□□□ -0.92
VPS39-205ENST00000562258 BEND6Q5SZJ8 279 aaPredicted RBP9.32□□□□□ -0.92
VPS39-205ENST00000562258 TPRG1Q6ZUI0 275 aa9.32□□□□□ -0.92
VPS39-205ENST00000562258 PRPF39Q86UA1 669 aaKnown RBP9.32□□□□□ -0.92
VPS39-205ENST00000562258 TBC1D19Q8N5T2 526 aa9.32□□□□□ -0.92
VPS39-205ENST00000562258 CCDC197Q8NCU1 140 aa9.32□□□□□ -0.92
VPS39-205ENST00000562258 OR10G6Q8NH81 332 aa9.32□□□□□ -0.92
VPS39-205ENST00000562258 ACDQ96AP0 544 aa9.32□□□□□ -0.92
VPS39-205ENST00000562258 CXorf40BQ96DE9 158 aa9.32□□□□□ -0.92
VPS39-205ENST00000562258 MFSD3Q96ES6 412 aa9.32□□□□□ -0.92
VPS39-205ENST00000562258 P2RY13Q9BPV8 354 aa9.32□□□□□ -0.92
VPS39-205ENST00000562258 CCDC3Q9BQI4 270 aa9.32□□□□□ -0.92
VPS39-205ENST00000562258 HERC2P3Q9BVR0 1158 aa9.32□□□□□ -0.92
VPS39-205ENST00000562258 GTPBP2Q9BX10 602 aaKnown RBP9.32□□□□□ -0.92
VPS39-205ENST00000562258 ACTR8Q9H981 624 aa9.32□□□□□ -0.92
VPS39-205ENST00000562258 BAG5Q9UL15 447 aa9.32□□□□□ -0.92
VPS39-205ENST00000562258 MAGEB16A2A368 324 aa9.31□□□□□ -0.92
VPS39-205ENST00000562258 INSIG1O15503 277 aa9.31□□□□□ -0.92
VPS39-205ENST00000562258 MTX2O75431 263 aa9.31□□□□□ -0.92
VPS39-205ENST00000562258 MYO1DO94832 1006 aa9.31□□□□□ -0.92
VPS39-205ENST00000562258 RASGRP1O95267 797 aa9.31□□□□□ -0.92
VPS39-205ENST00000562258 ALPIP09923 528 aa9.31□□□□□ -0.92
VPS39-205ENST00000562258 CXCR3P49682 368 aa9.31□□□□□ -0.92
VPS39-205ENST00000562258 DSC1Q08554 894 aa9.31□□□□□ -0.92
VPS39-205ENST00000562258 ART3Q13508 389 aa9.31□□□□□ -0.92
VPS39-205ENST00000562258 RUNX3Q13761 415 aa9.31□□□□□ -0.92
VPS39-205ENST00000562258 PTCRAQ6ISU1 281 aaPredicted RBP9.31□□□□□ -0.92
VPS39-205ENST00000562258 GSTCDQ8NEC7 633 aa9.31□□□□□ -0.92
VPS39-205ENST00000562258 ZNF398Q8TD17 642 aa9.31□□□□□ -0.92
VPS39-205ENST00000562258 SYTL2Q9HCH5 934 aa9.31□□□□□ -0.92
VPS39-205ENST00000562258 TMEM51Q9NW97 253 aa9.31□□□□□ -0.92
VPS39-205ENST00000562258 MARCH5Q9NX47 278 aa9.31□□□□□ -0.92
VPS39-205ENST00000562258 SYBUQ9NX95 663 aa9.31□□□□□ -0.92
VPS39-205ENST00000562258 TNS1Q9HBL0 1735 aaKnown RBP9.31□□□□□ -0.92
VPS39-205ENST00000562258 LRRC72A6NJI9 287 aa9.31□□□□□ -0.92
VPS39-205ENST00000562258 CCNT2O60583 730 aaKnown RBP9.31□□□□□ -0.92
VPS39-205ENST00000562258 KAT7O95251 611 aa9.31□□□□□ -0.92
VPS39-205ENST00000562258 ITGB8P26012 769 aa9.31□□□□□ -0.92
VPS39-205ENST00000562258 GP5P40197 560 aa9.31□□□□□ -0.92
VPS39-205ENST00000562258 MAPKAPK2P49137 400 aa9.31□□□□□ -0.92
VPS39-205ENST00000562258 IL1RL1Q01638 556 aa9.31□□□□□ -0.92
VPS39-205ENST00000562258 NLRP9Q7RTR0 991 aa9.31□□□□□ -0.92
VPS39-205ENST00000562258 METTL3Q86U44 580 aaKnown RBP9.31□□□□□ -0.92
VPS39-205ENST00000562258 ZMIZ2Q8NF64 920 aa9.31□□□□□ -0.92
VPS39-205ENST00000562258 FAM83DQ9H4H8 585 aa9.31□□□□□ -0.92
VPS39-205ENST00000562258 ELOVL2Q9NXB9 296 aa9.31□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 62.6 ms