RNA–Protein interactions for RNA: ENST00000561381.5

USP3-220, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2

Gene USP3, Length 979 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-220ENST00000561381 GEMIN4P57678 1058 aaKnown RBP11.79□□□□□ -0.52
USP3-220ENST00000561381 RPL7AP62424 266 aaKnown RBP11.79□□□□□ -0.52
USP3-220ENST00000561381 SCYL2Q6P3W7 929 aa11.79□□□□□ -0.52
USP3-220ENST00000561381 GUSBP11Q6P575 273 aa11.79□□□□□ -0.52
USP3-220ENST00000561381 GDPD4Q6W3E5 623 aa11.79□□□□□ -0.52
USP3-220ENST00000561381 THSD4Q6ZMP0 1018 aa11.79□□□□□ -0.52
USP3-220ENST00000561381 MON1BQ7L1V2 547 aa11.79□□□□□ -0.52
USP3-220ENST00000561381 TTC7BQ86TV6 843 aa11.79□□□□□ -0.52
USP3-220ENST00000561381 VPS36Q86VN1 386 aa11.79□□□□□ -0.52
USP3-220ENST00000561381 ZNF354CQ86Y25 554 aa11.79□□□□□ -0.52
USP3-220ENST00000561381 PHF13Q86YI8 300 aaPredicted RBP11.79□□□□□ -0.52
USP3-220ENST00000561381 RTL3Q8N8U3 475 aaKnown RBP11.79□□□□□ -0.52
USP3-220ENST00000561381 C3orf20Q8ND61 904 aa11.79□□□□□ -0.52
USP3-220ENST00000561381 LMX1AQ8TE12 382 aa11.79□□□□□ -0.52
USP3-220ENST00000561381 BAP1Q92560 729 aa11.79□□□□□ -0.52
USP3-220ENST00000561381 NTAN1Q96AB6 310 aa11.79□□□□□ -0.52
USP3-220ENST00000561381 RAB7BQ96AH8 199 aa11.79□□□□□ -0.52
USP3-220ENST00000561381 HMCESQ96FZ2 354 aa11.79□□□□□ -0.52
USP3-220ENST00000561381 NAF1Q96HR8 494 aaKnown RBP11.79□□□□□ -0.52
USP3-220ENST00000561381 PCMTD1Q96MG8 357 aaPredicted RBP11.79□□□□□ -0.52
USP3-220ENST00000561381 GDAP1L1Q96MZ0 367 aa11.79□□□□□ -0.52
USP3-220ENST00000561381 DUSP23Q9BVJ7 150 aa11.79□□□□□ -0.52
USP3-220ENST00000561381 RETREG1Q9H6L5 497 aa11.79□□□□□ -0.52
USP3-220ENST00000561381 MBNL1Q9NR56 388 aaKnown RBP11.79□□□□□ -0.52
USP3-220ENST00000561381 SEPT11Q9NVA2 429 aaKnown RBP11.79□□□□□ -0.52
USP3-220ENST00000561381 RP1P56715 2156 aa11.79□□□□□ -0.52
USP3-220ENST00000561381 CPED1A4D0V7 1026 aa11.78□□□□□ -0.52
USP3-220ENST00000561381 SIGLEC16A6NMB1 481 aa11.78□□□□□ -0.52
USP3-220ENST00000561381 LGALS16A8MUM7 142 aa11.78□□□□□ -0.52
USP3-220ENST00000561381 RASA4BC9J798 803 aa11.78□□□□□ -0.52
USP3-220ENST00000561381 H3BM21 787 aa11.78□□□□□ -0.52
USP3-220ENST00000561381 RASA4O43374 803 aa11.78□□□□□ -0.52
USP3-220ENST00000561381 CREB3O43889 395 aa11.78□□□□□ -0.52
USP3-220ENST00000561381 USP12O75317 370 aa11.78□□□□□ -0.52
USP3-220ENST00000561381 CALB1P05937 261 aa11.78□□□□□ -0.52
USP3-220ENST00000561381 GP1BAP07359 652 aa11.78□□□□□ -0.52
USP3-220ENST00000561381 TPM2P07951 284 aa11.78□□□□□ -0.52
USP3-220ENST00000561381 TIMP2P16035 220 aa11.78□□□□□ -0.52
USP3-220ENST00000561381 ACTN2P35609 894 aa11.78□□□□□ -0.52
USP3-220ENST00000561381 RHOAP61586 193 aa11.78□□□□□ -0.52
USP3-220ENST00000561381 GABREP78334 506 aa11.78□□□□□ -0.52
USP3-220ENST00000561381 TLE3Q04726 772 aa11.78□□□□□ -0.52
USP3-220ENST00000561381 C1orf61Q13536 156 aa11.78□□□□□ -0.52
USP3-220ENST00000561381 EFHC2Q5JST6 749 aa11.78□□□□□ -0.52
USP3-220ENST00000561381 ZCCHC8Q6NZY4 707 aaKnown RBP11.78□□□□□ -0.52
USP3-220ENST00000561381 CRTC1Q6UUV9 634 aa11.78□□□□□ -0.52
USP3-220ENST00000561381 CLEC17AQ6ZS10 378 aa11.78□□□□□ -0.52
USP3-220ENST00000561381 RBM43Q6ZSC3 357 aaKnown RBP11.78□□□□□ -0.52
USP3-220ENST00000561381 ZSCAN30Q86W11 494 aa11.78□□□□□ -0.52
USP3-220ENST00000561381 SPACA3Q8IXA5 215 aa11.78□□□□□ -0.52
USP3-220ENST00000561381 DENND6BQ8NEG7 585 aa11.78□□□□□ -0.52
USP3-220ENST00000561381 NEK11Q8NG66 645 aa11.78□□□□□ -0.52
USP3-220ENST00000561381 MAPK15Q8TD08 544 aa11.78□□□□□ -0.52
USP3-220ENST00000561381 ASB12Q8WXK4 309 aa11.78□□□□□ -0.52
USP3-220ENST00000561381 WNT2BQ93097 391 aa11.78□□□□□ -0.52
USP3-220ENST00000561381 EXOC2Q96KP1 924 aa11.78□□□□□ -0.52
USP3-220ENST00000561381 FCRL3Q96P31 734 aaPredicted RBP11.78□□□□□ -0.52
USP3-220ENST00000561381 MCEEQ96PE7 176 aa11.78□□□□□ -0.52
USP3-220ENST00000561381 DEPDC7Q96QD5 511 aa11.78□□□□□ -0.52
USP3-220ENST00000561381 WRAP53Q9BUR4 548 aaKnown RBP11.78□□□□□ -0.52
USP3-220ENST00000561381 OSBPL1AQ9BXW6 950 aa11.78□□□□□ -0.52
USP3-220ENST00000561381 TTYH3Q9C0H2 523 aa11.78□□□□□ -0.52
USP3-220ENST00000561381 ABCG4Q9H172 646 aa11.78□□□□□ -0.52
USP3-220ENST00000561381 LHX3Q9UBR4 397 aa11.78□□□□□ -0.52
USP3-220ENST00000561381 LIMA1Q9UHB6 759 aaKnown RBP11.78□□□□□ -0.52
USP3-220ENST00000561381 FZD10Q9ULW2 581 aa11.78□□□□□ -0.52
USP3-220ENST00000561381 CSNK1G3Q9Y6M4 447 aa11.78□□□□□ -0.52
USP3-220ENST00000561381 COL27A1Q8IZC6 1860 aaPredicted RBP11.78□□□□□ -0.52
USP3-220ENST00000561381 A0A1W2PNU3 283 aaPredicted RBP11.77□□□□□ -0.53
USP3-220ENST00000561381 ZSCAN5CA6NGD5 496 aaPredicted RBP11.77□□□□□ -0.53
USP3-220ENST00000561381 EIF4E1BA6NMX2 242 aaKnown RBP11.77□□□□□ -0.53
USP3-220ENST00000561381 PIGNO95427 931 aa11.77□□□□□ -0.53
USP3-220ENST00000561381 IGSF6O95976 241 aa11.77□□□□□ -0.53
USP3-220ENST00000561381 CELA2BP08218 269 aaPredicted RBP11.77□□□□□ -0.53
USP3-220ENST00000561381 DUSP3P51452 185 aaPredicted RBP11.77□□□□□ -0.53
USP3-220ENST00000561381 ZNF143P52747 638 aaPredicted RBP11.77□□□□□ -0.53
USP3-220ENST00000561381 OGDHQ02218 1023 aa11.77□□□□□ -0.53
USP3-220ENST00000561381 UBXN1Q04323 297 aa11.77□□□□□ -0.53
USP3-220ENST00000561381 SERINC3Q13530 473 aa11.77□□□□□ -0.53
USP3-220ENST00000561381 CYTH1Q15438 398 aa11.77□□□□□ -0.53
USP3-220ENST00000561381 TCEA2Q15560 299 aa11.77□□□□□ -0.53
USP3-220ENST00000561381 KLHL40Q2TBA0 621 aa11.77□□□□□ -0.53
USP3-220ENST00000561381 PRRT3Q5FWE3 981 aa11.77□□□□□ -0.53
USP3-220ENST00000561381 PERM1Q5SV97 790 aa11.77□□□□□ -0.53
USP3-220ENST00000561381 DNAJC24Q6P3W2 148 aa11.77□□□□□ -0.53
USP3-220ENST00000561381 NYAP1Q6ZVC0 841 aa11.77□□□□□ -0.53
USP3-220ENST00000561381 EFL1Q7Z2Z2 1120 aaKnown RBP11.77□□□□□ -0.53
USP3-220ENST00000561381 PHACTR4Q8IZ21 702 aa11.77□□□□□ -0.53
USP3-220ENST00000561381 TP53I13Q8NBR0 393 aaPredicted RBP11.77□□□□□ -0.53
USP3-220ENST00000561381 ARHGEF26Q96DR7 871 aa11.77□□□□□ -0.53
USP3-220ENST00000561381 UBL7Q96S82 380 aaPredicted RBP11.77□□□□□ -0.53
USP3-220ENST00000561381 EPAS1Q99814 870 aa11.77□□□□□ -0.53
USP3-220ENST00000561381 AGPAT1Q99943 283 aa11.77□□□□□ -0.53
USP3-220ENST00000561381 LRRC61Q9BV99 259 aa11.77□□□□□ -0.53
USP3-220ENST00000561381 HSD3B7Q9H2F3 369 aa11.77□□□□□ -0.53
USP3-220ENST00000561381 USP29Q9HBJ7 922 aa11.77□□□□□ -0.53
USP3-220ENST00000561381 GPATCH2LQ9NWQ4 482 aa11.77□□□□□ -0.53
USP3-220ENST00000561381 TAS2R14Q9NYV8 317 aa11.77□□□□□ -0.53
USP3-220ENST00000561381 APOBEC3BQ9UH17 382 aaKnown RBP11.77□□□□□ -0.53
USP3-220ENST00000561381 COQ6Q9Y2Z9 468 aa11.77□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms