RNA–Protein interactions for RNA: ENST00000560628.1

LDLR-214, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 535 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-214ENST00000560628 CSF2P04141 144 aa10.34□□□□□ -0.75
LDLR-214ENST00000560628 PRKCGP05129 697 aa10.34□□□□□ -0.75
LDLR-214ENST00000560628 ALPPL2P10696 532 aa10.34□□□□□ -0.75
LDLR-214ENST00000560628 CKMT1AP12532 417 aa10.34□□□□□ -0.75
LDLR-214ENST00000560628 JUNDP17535 347 aa10.34□□□□□ -0.75
LDLR-214ENST00000560628 XPAP23025 273 aaPredicted RBP10.34□□□□□ -0.75
LDLR-214ENST00000560628 MIPP30301 263 aa10.34□□□□□ -0.75
LDLR-214ENST00000560628 PFN3P60673 137 aa10.34□□□□□ -0.75
LDLR-214ENST00000560628 E2F1Q01094 437 aa10.34□□□□□ -0.75
LDLR-214ENST00000560628 KLHL30Q0D2K2 578 aa10.34□□□□□ -0.75
LDLR-214ENST00000560628 EIF2B5Q13144 721 aaKnown RBP10.34□□□□□ -0.75
LDLR-214ENST00000560628 C1orf61Q13536 156 aa10.34□□□□□ -0.75
LDLR-214ENST00000560628 KLHL40Q2TBA0 621 aa10.34□□□□□ -0.75
LDLR-214ENST00000560628 DEFB133Q30KQ1 61 aa10.34□□□□□ -0.75
LDLR-214ENST00000560628 PPP6R3Q5H9R7 873 aaPredicted RBP10.34□□□□□ -0.75
LDLR-214ENST00000560628 ERMARDQ5T6L9 678 aa10.34□□□□□ -0.75
LDLR-214ENST00000560628 PARGQ86W56 976 aa10.34□□□□□ -0.75
LDLR-214ENST00000560628 LMX1AQ8TE12 382 aa10.34□□□□□ -0.75
LDLR-214ENST00000560628 CXorf40AQ8TE69 158 aa10.34□□□□□ -0.75
LDLR-214ENST00000560628 ASB12Q8WXK4 309 aa10.34□□□□□ -0.75
LDLR-214ENST00000560628 ARHGEF26Q96DR7 871 aa10.34□□□□□ -0.75
LDLR-214ENST00000560628 KCTD15Q96SI1 283 aaPredicted RBP10.34□□□□□ -0.75
LDLR-214ENST00000560628 SNRNP25Q9BV90 132 aaKnown RBP10.34□□□□□ -0.75
LDLR-214ENST00000560628 CPEB1Q9BZB8 566 aaKnown RBP10.34□□□□□ -0.75
LDLR-214ENST00000560628 TCEAL2Q9H3H9 227 aaPredicted RBP10.34□□□□□ -0.75
LDLR-214ENST00000560628 GPR27Q9NS67 375 aa10.34□□□□□ -0.75
LDLR-214ENST00000560628 NLGN3Q9NZ94 848 aa10.34□□□□□ -0.75
LDLR-214ENST00000560628 AIPL1Q9NZN9 384 aa10.34□□□□□ -0.75
LDLR-214ENST00000560628 DKK3Q9UBP4 350 aa10.34□□□□□ -0.75
LDLR-214ENST00000560628 CNOT8Q9UFF9 292 aaKnown RBP10.34□□□□□ -0.75
LDLR-214ENST00000560628 CLCA2Q9UQC9 943 aa10.34□□□□□ -0.75
LDLR-214ENST00000560628 COQ6Q9Y2Z9 468 aa10.34□□□□□ -0.75
LDLR-214ENST00000560628 MFHAS1Q9Y4C4 1052 aa10.34□□□□□ -0.75
LDLR-214ENST00000560628 DMXL2Q8TDJ6 3036 aa10.34□□□□□ -0.75
LDLR-214ENST00000560628 APC2O95996 2303 aa10.34□□□□□ -0.75
LDLR-214ENST00000560628 ZFHX4Q86UP3 3567 aa10.34□□□□□ -0.75
LDLR-214ENST00000560628 ACACAQ13085 2346 aa10.33□□□□□ -0.76
LDLR-214ENST00000560628 CHD6Q8TD26 2715 aa10.33□□□□□ -0.76
LDLR-214ENST00000560628 LY6G6EA0A0G2JKS1 128 aa10.33□□□□□ -0.76
LDLR-214ENST00000560628 A0A1B0GTH6 734 aa10.33□□□□□ -0.76
LDLR-214ENST00000560628 A0A1W2PQC6 194 aa10.33□□□□□ -0.76
LDLR-214ENST00000560628 CPED1A4D0V7 1026 aa10.33□□□□□ -0.76
LDLR-214ENST00000560628 ARHGAP42A6NI28 874 aa10.33□□□□□ -0.76
LDLR-214ENST00000560628 H3BM21 787 aa10.33□□□□□ -0.76
LDLR-214ENST00000560628 DFFAO00273 331 aa10.33□□□□□ -0.76
LDLR-214ENST00000560628 PRPSAP2O60256 369 aa10.33□□□□□ -0.76
LDLR-214ENST00000560628 OPA1O60313 960 aa10.33□□□□□ -0.76
LDLR-214ENST00000560628 PRAMEF11O60813 436 aa10.33□□□□□ -0.76
LDLR-214ENST00000560628 GZMAP12544 262 aa10.33□□□□□ -0.76
LDLR-214ENST00000560628 NME1P15531 152 aaKnown RBP10.33□□□□□ -0.76
LDLR-214ENST00000560628 ERCC2P18074 760 aa10.33□□□□□ -0.76
LDLR-214ENST00000560628 IGFALSP35858 605 aa10.33□□□□□ -0.76
LDLR-214ENST00000560628 RGRP47804 291 aa10.33□□□□□ -0.76
LDLR-214ENST00000560628 NDST2P52849 883 aa10.33□□□□□ -0.76
LDLR-214ENST00000560628 THOP1P52888 689 aa10.33□□□□□ -0.76
LDLR-214ENST00000560628 NR1I3Q14994 352 aa10.33□□□□□ -0.76
LDLR-214ENST00000560628 IQCB1Q15051 598 aa10.33□□□□□ -0.76
LDLR-214ENST00000560628 FAXCQ5TGI0 409 aa10.33□□□□□ -0.76
LDLR-214ENST00000560628 PPP1R2P3Q6NXS1 205 aa10.33□□□□□ -0.76
LDLR-214ENST00000560628 ARHGAP36Q6ZRI8 547 aa10.33□□□□□ -0.76
LDLR-214ENST00000560628 RFX8Q6ZV50 586 aa10.33□□□□□ -0.76
LDLR-214ENST00000560628 PDZD3Q86UT5 571 aa10.33□□□□□ -0.76
LDLR-214ENST00000560628 ZSCAN30Q86W11 494 aa10.33□□□□□ -0.76
LDLR-214ENST00000560628 CAMK1DQ8IU85 385 aa10.33□□□□□ -0.76
LDLR-214ENST00000560628 TP53INP2Q8IXH6 220 aa10.33□□□□□ -0.76
LDLR-214ENST00000560628 RBFAQ8N0V3 343 aa10.33□□□□□ -0.76
LDLR-214ENST00000560628 TSEN2Q8NCE0 465 aaKnown RBP10.33□□□□□ -0.76
LDLR-214ENST00000560628 ZNF548Q8NEK5 533 aaPredicted RBP10.33□□□□□ -0.76
LDLR-214ENST00000560628 RFFLQ8WZ73 363 aa10.33□□□□□ -0.76
LDLR-214ENST00000560628 ZNF653Q96CK0 615 aa10.33□□□□□ -0.76
LDLR-214ENST00000560628 NXPE2Q96DL1 559 aa10.33□□□□□ -0.76
LDLR-214ENST00000560628 NRSN2Q9GZP1 204 aa10.33□□□□□ -0.76
LDLR-214ENST00000560628 SUV39H2Q9H5I1 410 aa10.33□□□□□ -0.76
LDLR-214ENST00000560628 PDFQ9HBH1 243 aa10.33□□□□□ -0.76
LDLR-214ENST00000560628 PCDH12Q9NPG4 1184 aa10.33□□□□□ -0.76
LDLR-214ENST00000560628 DONSONQ9NYP3 566 aa10.33□□□□□ -0.76
LDLR-214ENST00000560628 PNMA8BQ9ULN7 279 aaPredicted RBP10.33□□□□□ -0.76
LDLR-214ENST00000560628 U3KQA8 63 aa10.33□□□□□ -0.76
LDLR-214ENST00000560628 ZZEF1O43149 2961 aa10.32□□□□□ -0.76
LDLR-214ENST00000560628 PKD1L2Q7Z442 2459 aa10.32□□□□□ -0.76
LDLR-214ENST00000560628 CHD5Q8TDI0 1954 aa10.32□□□□□ -0.76
LDLR-214ENST00000560628 AQP9O43315 295 aa10.32□□□□□ -0.76
LDLR-214ENST00000560628 TLX3O43711 291 aaPredicted RBP10.32□□□□□ -0.76
LDLR-214ENST00000560628 GCATO75600 419 aa10.32□□□□□ -0.76
LDLR-214ENST00000560628 PALMO75781 387 aa10.32□□□□□ -0.76
LDLR-214ENST00000560628 ITPKBP27987 946 aa10.32□□□□□ -0.76
LDLR-214ENST00000560628 HTR7P34969 479 aa10.32□□□□□ -0.76
LDLR-214ENST00000560628 EIF4A3P38919 411 aaKnown RBP10.32□□□□□ -0.76
LDLR-214ENST00000560628 PRKCIP41743 596 aa10.32□□□□□ -0.76
LDLR-214ENST00000560628 DUSP3P51452 185 aaPredicted RBP10.32□□□□□ -0.76
LDLR-214ENST00000560628 ADKP55263 362 aaKnown RBP10.32□□□□□ -0.76
LDLR-214ENST00000560628 PTK2BQ14289 1009 aa10.32□□□□□ -0.76
LDLR-214ENST00000560628 RTP5Q14D33 572 aa10.32□□□□□ -0.76
LDLR-214ENST00000560628 TCEA2Q15560 299 aa10.32□□□□□ -0.76
LDLR-214ENST00000560628 CDKN3Q16667 212 aa10.32□□□□□ -0.76
LDLR-214ENST00000560628 UGP2Q16851 508 aa10.32□□□□□ -0.76
LDLR-214ENST00000560628 WSCD2Q2TBF2 565 aa10.32□□□□□ -0.76
LDLR-214ENST00000560628 TMEM52BQ4KMG9 183 aa10.32□□□□□ -0.76
LDLR-214ENST00000560628 PRRT3Q5FWE3 981 aa10.32□□□□□ -0.76
LDLR-214ENST00000560628 CFAP58Q5T655 872 aa10.32□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms