RNA–Protein interactions for RNA: ENST00000557358.1

VPS33B-206, Transcript of VPS33B, late endosome and lysosome associated, human

TSL 4

Gene VPS33B, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VPS33B-206	ENST00000557358	LRRD1	A4D1F6	860 aa		13.97	□□□□□ -0.17
VPS33B-206	ENST00000557358	GK	P32189	559 aa		13.97	□□□□□ -0.17
VPS33B-206	ENST00000557358	SCNN1B	P51168	640 aa		13.97	□□□□□ -0.17
VPS33B-206	ENST00000557358	NAP1L1	P55209	391 aa	Known RBP	13.97	□□□□□ -0.17
VPS33B-206	ENST00000557358	GSDMD	P57764	484 aa		13.97	□□□□□ -0.17
VPS33B-206	ENST00000557358	TAS2R38	P59533	333 aa		13.97	□□□□□ -0.17
VPS33B-206	ENST00000557358	DPYSL3	Q14195	570 aa		13.97	□□□□□ -0.17
VPS33B-206	ENST00000557358	IFI16	Q16666	785 aa	Known RBP	13.97	□□□□□ -0.17
VPS33B-206	ENST00000557358	ANKRD20A8P	Q5CZ79	823 aa		13.97	□□□□□ -0.17
VPS33B-206	ENST00000557358	RALGPS1	Q5JS13	557 aa		13.97	□□□□□ -0.17
VPS33B-206	ENST00000557358	MARC1	Q5VT66	337 aa		13.97	□□□□□ -0.17
VPS33B-206	ENST00000557358	LRRC38	Q5VT99	294 aa		13.97	□□□□□ -0.17
VPS33B-206	ENST00000557358	TXNRD3NB	Q6F5E7	133 aa		13.97	□□□□□ -0.17
VPS33B-206	ENST00000557358	VSIG1	Q86XK7	387 aa		13.97	□□□□□ -0.17
VPS33B-206	ENST00000557358	NAXD	Q8IW45	347 aa		13.97	□□□□□ -0.17
VPS33B-206	ENST00000557358	RHOT1	Q8IXI2	618 aa		13.97	□□□□□ -0.17
VPS33B-206	ENST00000557358	OR2I1P	Q8NGU4	316 aa		13.97	□□□□□ -0.17
VPS33B-206	ENST00000557358	TSC1	Q92574	1164 aa		13.97	□□□□□ -0.17
VPS33B-206	ENST00000557358	PSKH2	Q96QS6	385 aa		13.97	□□□□□ -0.17
VPS33B-206	ENST00000557358	ELF4	Q99607	663 aa	Predicted RBP	13.97	□□□□□ -0.17
VPS33B-206	ENST00000557358	CDC6	Q99741	560 aa		13.97	□□□□□ -0.17
VPS33B-206	ENST00000557358	ORAI3	Q9BRQ5	295 aa		13.97	□□□□□ -0.17
VPS33B-206	ENST00000557358	SLC17A9	Q9BYT1	436 aa		13.97	□□□□□ -0.17
VPS33B-206	ENST00000557358	ERVMER34-1	Q9H9K5	563 aa		13.97	□□□□□ -0.17
VPS33B-206	ENST00000557358	LHX3	Q9UBR4	397 aa		13.97	□□□□□ -0.17
VPS33B-206	ENST00000557358	PCDHA13	Q9Y5I0	950 aa		13.97	□□□□□ -0.17
VPS33B-206	ENST00000557358	HS3ST3A1	Q9Y663	406 aa		13.97	□□□□□ -0.17
VPS33B-206	ENST00000557358	PLXNA2	O75051	1894 aa		13.97	□□□□□ -0.17
VPS33B-206	ENST00000557358		A6NNZ2	444 aa		13.96	□□□□□ -0.17
VPS33B-206	ENST00000557358	ZNF487	B1APH4	448 aa		13.96	□□□□□ -0.17
VPS33B-206	ENST00000557358	FPGT	O14772	594 aa		13.96	□□□□□ -0.17
VPS33B-206	ENST00000557358	PCDHGA12	O60330	932 aa		13.96	□□□□□ -0.17
VPS33B-206	ENST00000557358	TM7SF2	O76062	418 aa		13.96	□□□□□ -0.17
VPS33B-206	ENST00000557358	PTMA	P06454	111 aa	Known RBP	13.96	□□□□□ -0.17
VPS33B-206	ENST00000557358	ITGAV	P06756	1048 aa		13.96	□□□□□ -0.17
VPS33B-206	ENST00000557358	ADRB1	P08588	477 aa		13.96	□□□□□ -0.17
VPS33B-206	ENST00000557358	TNNT1	P13805	278 aa		13.96	□□□□□ -0.17
VPS33B-206	ENST00000557358	PRLR	P16471	622 aa		13.96	□□□□□ -0.17
VPS33B-206	ENST00000557358	CA4	P22748	312 aa		13.96	□□□□□ -0.17
VPS33B-206	ENST00000557358	CES1	P23141	567 aa		13.96	□□□□□ -0.17
VPS33B-206	ENST00000557358	GRK6	P43250	576 aa		13.96	□□□□□ -0.17
VPS33B-206	ENST00000557358	MMP13	P45452	471 aa		13.96	□□□□□ -0.17
VPS33B-206	ENST00000557358	MMRN1	Q13201	1228 aa		13.96	□□□□□ -0.17
VPS33B-206	ENST00000557358	TCEAL1	Q15170	157 aa		13.96	□□□□□ -0.17
VPS33B-206	ENST00000557358	ZNF423	Q2M1K9	1284 aa		13.96	□□□□□ -0.17
VPS33B-206	ENST00000557358	ZNF284	Q2VY69	593 aa		13.96	□□□□□ -0.17
VPS33B-206	ENST00000557358	LAYN	Q6UX15	382 aa		13.96	□□□□□ -0.17
VPS33B-206	ENST00000557358	BZW1	Q7L1Q6	419 aa	Known RBP	13.96	□□□□□ -0.17
VPS33B-206	ENST00000557358	NDUFAF2	Q8N183	169 aa		13.96	□□□□□ -0.17
VPS33B-206	ENST00000557358	TSEN2	Q8NCE0	465 aa	Known RBP	13.96	□□□□□ -0.17
VPS33B-206	ENST00000557358	FAM71B	Q8TC56	605 aa		13.96	□□□□□ -0.17
VPS33B-206	ENST00000557358	RHBDD1	Q8TEB9	315 aa		13.96	□□□□□ -0.17
VPS33B-206	ENST00000557358	KLK6	Q92876	244 aa		13.96	□□□□□ -0.17
VPS33B-206	ENST00000557358	MYOC	Q99972	504 aa		13.96	□□□□□ -0.17
VPS33B-206	ENST00000557358	EBF2	Q9HAK2	575 aa		13.96	□□□□□ -0.17
VPS33B-206	ENST00000557358	SCUBE2	Q9NQ36	999 aa		13.96	□□□□□ -0.17
VPS33B-206	ENST00000557358	KLHL11	Q9NVR0	708 aa		13.96	□□□□□ -0.17
VPS33B-206	ENST00000557358	FNDC3A	Q9Y2H6	1198 aa	Known RBP	13.96	□□□□□ -0.17
VPS33B-206	ENST00000557358	EPN1	Q9Y6I3	576 aa	Predicted RBP	13.96	□□□□□ -0.17
VPS33B-206	ENST00000557358	DOCK9	Q9BZ29	2069 aa		13.95	□□□□□ -0.18
VPS33B-206	ENST00000557358	CACNA1A	O00555	2505 aa		13.95	□□□□□ -0.18
VPS33B-206	ENST00000557358		A0A0A6YYK5	440 aa	Predicted RBP	13.95	□□□□□ -0.18
VPS33B-206	ENST00000557358		A0A1W2PR77	199 aa		13.95	□□□□□ -0.18
VPS33B-206	ENST00000557358		H0Y8X5	98 aa		13.95	□□□□□ -0.18
VPS33B-206	ENST00000557358	SH3BP5	O60239	455 aa		13.95	□□□□□ -0.18
VPS33B-206	ENST00000557358	GJB3	O75712	270 aa		13.95	□□□□□ -0.18
VPS33B-206	ENST00000557358	TRIM16	O95361	564 aa		13.95	□□□□□ -0.18
VPS33B-206	ENST00000557358	PIGN	O95427	931 aa		13.95	□□□□□ -0.18
VPS33B-206	ENST00000557358	LCA5L	O95447	670 aa		13.95	□□□□□ -0.18
VPS33B-206	ENST00000557358	PAK4	O96013	591 aa	Predicted RBP	13.95	□□□□□ -0.18
VPS33B-206	ENST00000557358	KRT1	P04264	644 aa		13.95	□□□□□ -0.18
VPS33B-206	ENST00000557358	THEGL	P0DJG4	465 aa		13.95	□□□□□ -0.18
VPS33B-206	ENST00000557358	CD59	P13987	128 aa		13.95	□□□□□ -0.18
VPS33B-206	ENST00000557358	KDELR1	P24390	212 aa		13.95	□□□□□ -0.18
VPS33B-206	ENST00000557358	NXPH1	P58417	271 aa		13.95	□□□□□ -0.18
VPS33B-206	ENST00000557358	TAS2R40	P59535	323 aa		13.95	□□□□□ -0.18
VPS33B-206	ENST00000557358	SIM1	P81133	766 aa	Predicted RBP	13.95	□□□□□ -0.18
VPS33B-206	ENST00000557358	ITK	Q08881	620 aa		13.95	□□□□□ -0.18
VPS33B-206	ENST00000557358	PAFAH1B3	Q15102	231 aa	Known RBP	13.95	□□□□□ -0.18
VPS33B-206	ENST00000557358	TRIP6	Q15654	476 aa	Known RBP	13.95	□□□□□ -0.18
VPS33B-206	ENST00000557358	UGP2	Q16851	508 aa		13.95	□□□□□ -0.18
VPS33B-206	ENST00000557358	SEL1L3	Q68CR1	1132 aa		13.95	□□□□□ -0.18
VPS33B-206	ENST00000557358	ARHGAP36	Q6ZRI8	547 aa		13.95	□□□□□ -0.18
VPS33B-206	ENST00000557358	PTAR1	Q7Z6K3	402 aa	Predicted RBP	13.95	□□□□□ -0.18
VPS33B-206	ENST00000557358	PIP4P1	Q86T03	277 aa		13.95	□□□□□ -0.18
VPS33B-206	ENST00000557358	KIAA1328	Q86T90	577 aa		13.95	□□□□□ -0.18
VPS33B-206	ENST00000557358	NETO2	Q8NC67	525 aa		13.95	□□□□□ -0.18
VPS33B-206	ENST00000557358	CCNY	Q8ND76	341 aa		13.95	□□□□□ -0.18
VPS33B-206	ENST00000557358	DENND6B	Q8NEG7	585 aa		13.95	□□□□□ -0.18
VPS33B-206	ENST00000557358	ASB12	Q8WXK4	309 aa		13.95	□□□□□ -0.18
VPS33B-206	ENST00000557358	BAG1	Q99933	345 aa	Predicted RBP	13.95	□□□□□ -0.18
VPS33B-206	ENST00000557358	ETNK2	Q9NVF9	386 aa		13.95	□□□□□ -0.18
VPS33B-206	ENST00000557358	APOBEC2	Q9Y235	224 aa	Known RBP	13.95	□□□□□ -0.18
VPS33B-206	ENST00000557358	DCHS1	Q96JQ0	3298 aa		13.95	□□□□□ -0.18
VPS33B-206	ENST00000557358		A0A1B0GTQ1	180 aa		13.94	□□□□□ -0.18
VPS33B-206	ENST00000557358	MED19	A0JLT2	244 aa	Predicted RBP	13.94	□□□□□ -0.18
VPS33B-206	ENST00000557358	IGLON5	A6NGN9	336 aa		13.94	□□□□□ -0.18
VPS33B-206	ENST00000557358	TOR1B	O14657	336 aa		13.94	□□□□□ -0.18
VPS33B-206	ENST00000557358	APOL1	O14791	398 aa		13.94	□□□□□ -0.18
VPS33B-206	ENST00000557358	INSIG1	O15503	277 aa		13.94	□□□□□ -0.18

Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms