RNA–Protein interactions for RNA: ENST00000549578.5

VPS29-206, Transcript of VPS29, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS29, Length 1,523 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-206ENST00000549578 FCRL5Q96RD9 977 aa21.41■■□□□ 1.02
VPS29-206ENST00000549578 GORASP1Q9BQQ3 440 aa21.41■■□□□ 1.02
VPS29-206ENST00000549578 TUBB2BQ9BVA1 445 aa21.41■■□□□ 1.02
VPS29-206ENST00000549578 PABPC3Q9H361 631 aaKnown RBP21.41■■□□□ 1.02
VPS29-206ENST00000549578 SUV39H2Q9H5I1 410 aa21.41■■□□□ 1.02
VPS29-206ENST00000549578 EBF1Q9UH73 591 aa21.41■■□□□ 1.02
VPS29-206ENST00000549578 RAI2Q9Y5P3 530 aa21.41■■□□□ 1.02
VPS29-206ENST00000549578 A0A1W2PP55 124 aa21.4■■□□□ 1.02
VPS29-206ENST00000549578 METTL18O95568 372 aa21.4■■□□□ 1.02
VPS29-206ENST00000549578 C7P10643 843 aa21.4■■□□□ 1.02
VPS29-206ENST00000549578 ACADMP11310 421 aa21.4■■□□□ 1.02
VPS29-206ENST00000549578 C5AR1P21730 350 aa21.4■■□□□ 1.02
VPS29-206ENST00000549578 ACTN2P35609 894 aa21.4■■□□□ 1.02
VPS29-206ENST00000549578 LMNB2Q03252 620 aa21.4■■□□□ 1.02
VPS29-206ENST00000549578 TRIP13Q15645 432 aaPredicted RBP21.4■■□□□ 1.02
VPS29-206ENST00000549578 ZNF805Q5CZA5 627 aa21.4■■□□□ 1.02
VPS29-206ENST00000549578 FAXCQ5TGI0 409 aa21.4■■□□□ 1.02
VPS29-206ENST00000549578 PDCD6IPQ8WUM4 868 aaKnown RBP21.4■■□□□ 1.02
VPS29-206ENST00000549578 ZNF641Q96N77 438 aaPredicted RBP21.4■■□□□ 1.02
VPS29-206ENST00000549578 KRT12Q99456 494 aa21.4■■□□□ 1.02
VPS29-206ENST00000549578 SERGEFQ9UGK8 458 aa21.4■■□□□ 1.02
VPS29-206ENST00000549578 TRAFD1O14545 582 aaPredicted RBP21.39■■□□□ 1.02
VPS29-206ENST00000549578 ITGB7P26010 798 aa21.39■■□□□ 1.02
VPS29-206ENST00000549578 RPL22P35268 128 aaKnown RBP21.39■■□□□ 1.02
VPS29-206ENST00000549578 DRD3P35462 400 aa21.39■■□□□ 1.02
VPS29-206ENST00000549578 ZBTB16Q05516 673 aa21.39■■□□□ 1.02
VPS29-206ENST00000549578 PCSK7Q16549 785 aa21.39■■□□□ 1.02
VPS29-206ENST00000549578 PARS2Q7L3T8 475 aaKnown RBP21.39■■□□□ 1.02
VPS29-206ENST00000549578 ZSWIM9Q86XI8 627 aa21.39■■□□□ 1.02
VPS29-206ENST00000549578 HDDC3Q8N4P3 179 aa21.39■■□□□ 1.02
VPS29-206ENST00000549578 PAF1Q8N7H5 531 aa21.39■■□□□ 1.02
VPS29-206ENST00000549578 GANCQ8TET4 914 aa21.39■■□□□ 1.02
VPS29-206ENST00000549578 TADA1Q96BN2 335 aa21.39■■□□□ 1.02
VPS29-206ENST00000549578 PPP1R16AQ96I34 528 aa21.39■■□□□ 1.02
VPS29-206ENST00000549578 DYRK4Q9NR20 520 aa21.39■■□□□ 1.02
VPS29-206ENST00000549578 FBXL12Q9NXK8 326 aa21.39■■□□□ 1.02
VPS29-206ENST00000549578 PCYOX1Q9UHG3 505 aa21.39■■□□□ 1.02
VPS29-206ENST00000549578 ZNF318Q5VUA4 2279 aa21.39■■□□□ 1.02
VPS29-206ENST00000549578 AXIN1O15169 862 aa21.39■■□□□ 1.01
VPS29-206ENST00000549578 SOCS5O75159 536 aa21.39■■□□□ 1.01
VPS29-206ENST00000549578 PMPCBO75439 489 aa21.39■■□□□ 1.01
VPS29-206ENST00000549578 ECEL1O95672 775 aa21.39■■□□□ 1.01
VPS29-206ENST00000549578 KRT14P02533 472 aa21.39■■□□□ 1.01
VPS29-206ENST00000549578 HOXA6P31267 233 aa21.39■■□□□ 1.01
VPS29-206ENST00000549578 FNTBP49356 437 aa21.39■■□□□ 1.01
VPS29-206ENST00000549578 VPS41P49754 854 aa21.39■■□□□ 1.01
VPS29-206ENST00000549578 TPMTP51580 245 aa21.39■■□□□ 1.01
VPS29-206ENST00000549578 CNTN1Q12860 1018 aa21.39■■□□□ 1.01
VPS29-206ENST00000549578 PARP6Q2NL67 630 aa21.39■■□□□ 1.01
VPS29-206ENST00000549578 TTC31Q49AM3 519 aaPredicted RBP21.39■■□□□ 1.01
VPS29-206ENST00000549578 CFAP58Q5T655 872 aa21.39■■□□□ 1.01
VPS29-206ENST00000549578 GRK7Q8WTQ7 553 aa21.39■■□□□ 1.01
VPS29-206ENST00000549578 ECHDC3Q96DC8 303 aa21.39■■□□□ 1.01
VPS29-206ENST00000549578 OMDQ99983 421 aa21.39■■□□□ 1.01
VPS29-206ENST00000549578 MLPHQ9BV36 600 aaPredicted RBP21.39■■□□□ 1.01
VPS29-206ENST00000549578 TDRD1Q9BXT4 1180 aaKnown RBP21.39■■□□□ 1.01
VPS29-206ENST00000549578 PCDH9Q9HC56 1237 aa21.39■■□□□ 1.01
VPS29-206ENST00000549578 PAK5Q9P286 719 aa21.39■■□□□ 1.01
VPS29-206ENST00000549578 FAM153AQ9UHL3 310 aa21.39■■□□□ 1.01
VPS29-206ENST00000549578 FEZ2Q9UHY8 353 aaPredicted RBP21.39■■□□□ 1.01
VPS29-206ENST00000549578 FBXO4Q9UKT5 387 aa21.39■■□□□ 1.01
VPS29-206ENST00000549578 SCML1Q9UN30 329 aa21.39■■□□□ 1.01
VPS29-206ENST00000549578 PCDHB9Q9Y5E1 797 aa21.39■■□□□ 1.01
VPS29-206ENST00000549578 C16orf96A6NNT2 1141 aa21.38■■□□□ 1.01
VPS29-206ENST00000549578 HTRA2O43464 458 aaPredicted RBP21.38■■□□□ 1.01
VPS29-206ENST00000549578 RNASEH2AO75792 299 aaKnown RBP21.38■■□□□ 1.01
VPS29-206ENST00000549578 GAS8O95995 478 aa21.38■■□□□ 1.01
VPS29-206ENST00000549578 PTGIRP43119 386 aa21.38■■□□□ 1.01
VPS29-206ENST00000549578 ANGPT1Q15389 498 aa21.38■■□□□ 1.01
VPS29-206ENST00000549578 LRRC73Q5JTD7 316 aa21.38■■□□□ 1.01
VPS29-206ENST00000549578 KDELC2Q7Z4H8 507 aa21.38■■□□□ 1.01
VPS29-206ENST00000549578 FAM124AQ86V42 546 aa21.38■■□□□ 1.01
VPS29-206ENST00000549578 RLN3Q8WXF3 142 aa21.38■■□□□ 1.01
VPS29-206ENST00000549578 ITM2CQ9NQX7 267 aa21.38■■□□□ 1.01
VPS29-206ENST00000549578 USP36Q9P275 1121 aaKnown RBP21.38■■□□□ 1.01
VPS29-206ENST00000549578 CHKBQ9Y259 395 aa21.38■■□□□ 1.01
VPS29-206ENST00000549578 NEU2Q9Y3R4 380 aa21.38■■□□□ 1.01
VPS29-206ENST00000549578 PDHA1P08559 390 aa21.37■■□□□ 1.01
VPS29-206ENST00000549578 P2RY2P41231 377 aa21.37■■□□□ 1.01
VPS29-206ENST00000549578 PRPSAP1Q14558 356 aa21.37■■□□□ 1.01
VPS29-206ENST00000549578 KDELC1Q6UW63 502 aa21.37■■□□□ 1.01
VPS29-206ENST00000549578 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP21.37■■□□□ 1.01
VPS29-206ENST00000549578 ERN2Q76MJ5 926 aaKnown RBP21.37■■□□□ 1.01
VPS29-206ENST00000549578 SLCO2A1Q92959 643 aa21.37■■□□□ 1.01
VPS29-206ENST00000549578 ETNK1Q9HBU6 452 aa21.37■■□□□ 1.01
VPS29-206ENST00000549578 RAB6BQ9NRW1 208 aa21.37■■□□□ 1.01
VPS29-206ENST00000549578 DKK3Q9UBP4 350 aa21.37■■□□□ 1.01
VPS29-206ENST00000549578 CYP8B1Q9UNU6 501 aa21.37■■□□□ 1.01
VPS29-206ENST00000549578 WDFY4Q6ZS81 3184 aa21.37■■□□□ 1.01
VPS29-206ENST00000549578 TSPAN11A1L157 253 aa21.36■■□□□ 1.01
VPS29-206ENST00000549578 GALR2O43603 387 aaPredicted RBP21.36■■□□□ 1.01
VPS29-206ENST00000549578 ANXA9O76027 345 aa21.36■■□□□ 1.01
VPS29-206ENST00000549578 PGLSO95336 258 aa21.36■■□□□ 1.01
VPS29-206ENST00000549578 WNT3AP56704 352 aa21.36■■□□□ 1.01
VPS29-206ENST00000549578 MRPS25P82663 173 aaKnown RBP21.36■■□□□ 1.01
VPS29-206ENST00000549578 DR1Q01658 176 aa21.36■■□□□ 1.01
VPS29-206ENST00000549578 PPP1R7Q15435 360 aa21.36■■□□□ 1.01
VPS29-206ENST00000549578 SLC14A2Q15849 920 aa21.36■■□□□ 1.01
VPS29-206ENST00000549578 SYCP2LQ5T4T6 812 aa21.36■■□□□ 1.01
VPS29-206ENST00000549578 PIP5KL1Q5T9C9 394 aa21.36■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms