RNA–Protein interactions for RNA: ENST00000545608.5

USP28-215, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 733 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-215ENST00000545608 UGT2B4P06133 528 aa8.59□□□□□ -1.03
USP28-215ENST00000545608 PLEKP08567 350 aaPredicted RBP8.59□□□□□ -1.03
USP28-215ENST00000545608 ALPPL2P10696 532 aa8.59□□□□□ -1.03
USP28-215ENST00000545608 KRT3P12035 628 aa8.59□□□□□ -1.03
USP28-215ENST00000545608 ITIH2P19823 946 aa8.59□□□□□ -1.03
USP28-215ENST00000545608 ETFBP38117 255 aa8.59□□□□□ -1.03
USP28-215ENST00000545608 STAT1P42224 750 aa8.59□□□□□ -1.03
USP28-215ENST00000545608 RABIFP47224 123 aa8.59□□□□□ -1.03
USP28-215ENST00000545608 PFN3P60673 137 aa8.59□□□□□ -1.03
USP28-215ENST00000545608 HNRNPKP61978 463 aaKnown RBP eCLIP8.59□□□□□ -1.03
USP28-215ENST00000545608 SNRPD1P62314 119 aaKnown RBP8.59□□□□□ -1.03
USP28-215ENST00000545608 EIF2B5Q13144 721 aaKnown RBP8.59□□□□□ -1.03
USP28-215ENST00000545608 SGCGQ13326 291 aa8.59□□□□□ -1.03
USP28-215ENST00000545608 POLD3Q15054 466 aaPredicted RBP8.59□□□□□ -1.03
USP28-215ENST00000545608 SWI5Q1ZZU3 235 aa8.59□□□□□ -1.03
USP28-215ENST00000545608 MYLK3Q32MK0 819 aa8.59□□□□□ -1.03
USP28-215ENST00000545608 GLIPR1L2Q4G1C9 344 aa8.59□□□□□ -1.03
USP28-215ENST00000545608 OXLD1Q5BKU9 147 aa8.59□□□□□ -1.03
USP28-215ENST00000545608 ZNF805Q5CZA5 627 aa8.59□□□□□ -1.03
USP28-215ENST00000545608 ATXN7L2Q5T6C5 722 aaPredicted RBP8.59□□□□□ -1.03
USP28-215ENST00000545608 TRIM72Q6ZMU5 477 aa8.59□□□□□ -1.03
USP28-215ENST00000545608 LRRC69Q6ZNQ3 347 aa8.59□□□□□ -1.03
USP28-215ENST00000545608 PYROXD2Q8N2H3 581 aa8.59□□□□□ -1.03
USP28-215ENST00000545608 FAM181AQ8N9Y4 354 aa8.59□□□□□ -1.03
USP28-215ENST00000545608 ZNF548Q8NEK5 533 aaPredicted RBP8.59□□□□□ -1.03
USP28-215ENST00000545608 OR2AP1Q8NGE2 309 aa8.59□□□□□ -1.03
USP28-215ENST00000545608 FAM172AQ8WUF8 416 aa8.59□□□□□ -1.03
USP28-215ENST00000545608 ASB12Q8WXK4 309 aa8.59□□□□□ -1.03
USP28-215ENST00000545608 FGF11Q92914 225 aa8.59□□□□□ -1.03
USP28-215ENST00000545608 RAB7BQ96AH8 199 aa8.59□□□□□ -1.03
USP28-215ENST00000545608 TBC1D31Q96DN5 1066 aa8.59□□□□□ -1.03
USP28-215ENST00000545608 KLHL32Q96NJ5 620 aa8.59□□□□□ -1.03
USP28-215ENST00000545608 LENG8Q96PV6 779 aaPredicted RBP8.59□□□□□ -1.03
USP28-215ENST00000545608 KLC2Q9H0B6 622 aa8.59□□□□□ -1.03
USP28-215ENST00000545608 PRORYQ9H606 182 aa8.59□□□□□ -1.03
USP28-215ENST00000545608 RETREG1Q9H6L5 497 aa8.59□□□□□ -1.03
USP28-215ENST00000545608 NOL6Q9H6R4 1146 aaKnown RBP8.59□□□□□ -1.03
USP28-215ENST00000545608 LMBRD1Q9NUN5 540 aa8.59□□□□□ -1.03
USP28-215ENST00000545608 FANCLQ9NW38 375 aa8.59□□□□□ -1.03
USP28-215ENST00000545608 ADAM22Q9P0K1 906 aa8.59□□□□□ -1.03
USP28-215ENST00000545608 IPO11Q9UI26 975 aaKnown RBP8.59□□□□□ -1.03
USP28-215ENST00000545608 TCRBV5S1A1TA0A578 114 aa8.58□□□□□ -1.04
USP28-215ENST00000545608 SIGLEC16A6NMB1 481 aa8.58□□□□□ -1.04
USP28-215ENST00000545608 NEMP1O14524 444 aa8.58□□□□□ -1.04
USP28-215ENST00000545608 AREL1O15033 823 aa8.58□□□□□ -1.04
USP28-215ENST00000545608 RRP8O43159 456 aaKnown RBP8.58□□□□□ -1.04
USP28-215ENST00000545608 BUB1O43683 1085 aa8.58□□□□□ -1.04
USP28-215ENST00000545608 MMP20O60882 483 aa8.58□□□□□ -1.04
USP28-215ENST00000545608 POP4O95707 220 aaKnown RBP8.58□□□□□ -1.04
USP28-215ENST00000545608 MPOP05164 745 aa8.58□□□□□ -1.04
USP28-215ENST00000545608 NME1P15531 152 aaKnown RBP8.58□□□□□ -1.04
USP28-215ENST00000545608 GPD1P21695 349 aa8.58□□□□□ -1.04
USP28-215ENST00000545608 ACTN2P35609 894 aa8.58□□□□□ -1.04
USP28-215ENST00000545608 DUSP3P51452 185 aaPredicted RBP8.58□□□□□ -1.04
USP28-215ENST00000545608 COPB1P53618 953 aaKnown RBP8.58□□□□□ -1.04
USP28-215ENST00000545608 GSCP56915 257 aaPredicted RBP8.58□□□□□ -1.04
USP28-215ENST00000545608 GEMIN4P57678 1058 aaKnown RBP8.58□□□□□ -1.04
USP28-215ENST00000545608 CCDC173Q0VFZ6 552 aa8.58□□□□□ -1.04
USP28-215ENST00000545608 C1orf61Q13536 156 aa8.58□□□□□ -1.04
USP28-215ENST00000545608 PDE1CQ14123 709 aaPredicted RBP8.58□□□□□ -1.04
USP28-215ENST00000545608 SYCP1Q15431 976 aa8.58□□□□□ -1.04
USP28-215ENST00000545608 CLEC16AQ2KHT3 1053 aa8.58□□□□□ -1.04
USP28-215ENST00000545608 TBC1D25Q3MII6 688 aa8.58□□□□□ -1.04
USP28-215ENST00000545608 LRRC73Q5JTD7 316 aa8.58□□□□□ -1.04
USP28-215ENST00000545608 FKBP15Q5T1M5 1219 aa8.58□□□□□ -1.04
USP28-215ENST00000545608 GDPD4Q6W3E5 623 aa8.58□□□□□ -1.04
USP28-215ENST00000545608 SLFN11Q7Z7L1 901 aa8.58□□□□□ -1.04
USP28-215ENST00000545608 TTC7BQ86TV6 843 aa8.58□□□□□ -1.04
USP28-215ENST00000545608 PARGQ86W56 976 aa8.58□□□□□ -1.04
USP28-215ENST00000545608 PHF13Q86YI8 300 aaPredicted RBP8.58□□□□□ -1.04
USP28-215ENST00000545608 RBFAQ8N0V3 343 aa8.58□□□□□ -1.04
USP28-215ENST00000545608 DENND6BQ8NEG7 585 aa8.58□□□□□ -1.04
USP28-215ENST00000545608 LMX1AQ8TE12 382 aa8.58□□□□□ -1.04
USP28-215ENST00000545608 NTAN1Q96AB6 310 aa8.58□□□□□ -1.04
USP28-215ENST00000545608 CENPTQ96BT3 561 aa8.58□□□□□ -1.04
USP28-215ENST00000545608 DUSP23Q9BVJ7 150 aa8.58□□□□□ -1.04
USP28-215ENST00000545608 SELENOOQ9BVL4 669 aa8.58□□□□□ -1.04
USP28-215ENST00000545608 TCEAL2Q9H3H9 227 aaPredicted RBP8.58□□□□□ -1.04
USP28-215ENST00000545608 PNMA8BQ9ULN7 279 aaPredicted RBP8.58□□□□□ -1.04
USP28-215ENST00000545608 HPCAL4Q9UM19 191 aa8.58□□□□□ -1.04
USP28-215ENST00000545608 CSNK1G3Q9Y6M4 447 aa8.58□□□□□ -1.04
USP28-215ENST00000545608 DSPP15924 2871 aaKnown RBP8.58□□□□□ -1.04
USP28-215ENST00000545608 CPED1A4D0V7 1026 aa8.57□□□□□ -1.04
USP28-215ENST00000545608 RASA4BC9J798 803 aa8.57□□□□□ -1.04
USP28-215ENST00000545608 H3BM21 787 aa8.57□□□□□ -1.04
USP28-215ENST00000545608 INSIG1O15503 277 aa8.57□□□□□ -1.04
USP28-215ENST00000545608 CCP110O43303 1012 aa8.57□□□□□ -1.04
USP28-215ENST00000545608 AQP9O43315 295 aa8.57□□□□□ -1.04
USP28-215ENST00000545608 RASA4O43374 803 aa8.57□□□□□ -1.04
USP28-215ENST00000545608 USP12O75317 370 aa8.57□□□□□ -1.04
USP28-215ENST00000545608 CSO75390 466 aaKnown RBP8.57□□□□□ -1.04
USP28-215ENST00000545608 GCATO75600 419 aa8.57□□□□□ -1.04
USP28-215ENST00000545608 TMCC1O94876 653 aa8.57□□□□□ -1.04
USP28-215ENST00000545608 PRB1P04280 392 aa8.57□□□□□ -1.04
USP28-215ENST00000545608 GP1BAP07359 652 aa8.57□□□□□ -1.04
USP28-215ENST00000545608 TPM2P07951 284 aa8.57□□□□□ -1.04
USP28-215ENST00000545608 TIMP2P16035 220 aa8.57□□□□□ -1.04
USP28-215ENST00000545608 TGM2P21980 687 aa8.57□□□□□ -1.04
USP28-215ENST00000545608 EPHB2P29323 1055 aa8.57□□□□□ -1.04
USP28-215ENST00000545608 IGFALSP35858 605 aa8.57□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms