RNA–Protein interactions for RNA: ENST00000545540.5

USP28-214, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2 BASIC

Gene USP28, Length 3,431 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-214ENST00000545540 DCBLD1Q8N8Z6 715 aa15.18■□□□□ 0.02
USP28-214ENST00000545540 HMGCLL1Q8TB92 370 aa15.18■□□□□ 0.02
USP28-214ENST00000545540 SMIM14Q96QK8 99 aa15.18■□□□□ 0.02
USP28-214ENST00000545540 CYP2S1Q96SQ9 504 aa15.18■□□□□ 0.02
USP28-214ENST00000545540 EFCAB1Q9HAE3 211 aa15.18■□□□□ 0.02
USP28-214ENST00000545540 TMEM114B3SHH9 223 aa15.18■□□□□ 0.02
USP28-214ENST00000545540 SOAT2O75908 522 aa15.18■□□□□ 0.02
USP28-214ENST00000545540 CLPTM1O96005 669 aa15.18■□□□□ 0.02
USP28-214ENST00000545540 TFAP2AP05549 437 aa15.18■□□□□ 0.02
USP28-214ENST00000545540 SMIM18P0DKX4 95 aa15.18■□□□□ 0.02
USP28-214ENST00000545540 MYBPC1Q00872 1141 aa15.18■□□□□ 0.02
USP28-214ENST00000545540 NAB1Q13506 487 aa15.18■□□□□ 0.02
USP28-214ENST00000545540 IHHQ14623 411 aa15.18■□□□□ 0.02
USP28-214ENST00000545540 MTX3Q5HYI7 312 aa15.18■□□□□ 0.02
USP28-214ENST00000545540 OGFRL1Q5TC84 451 aaPredicted RBP15.18■□□□□ 0.02
USP28-214ENST00000545540 C16orf89Q6UX73 402 aa15.18■□□□□ 0.02
USP28-214ENST00000545540 OR10T2Q8NGX3 314 aa15.18■□□□□ 0.02
USP28-214ENST00000545540 PDCD6IPQ8WUM4 868 aaKnown RBP15.18■□□□□ 0.02
USP28-214ENST00000545540 KCTD13Q8WZ19 329 aa15.18■□□□□ 0.02
USP28-214ENST00000545540 RTP3Q9BQQ7 232 aa15.18■□□□□ 0.02
USP28-214ENST00000545540 EGFL7Q9UHF1 273 aa15.18■□□□□ 0.02
USP28-214ENST00000545540 V9GYQ6 96 aa15.18■□□□□ 0.02
USP28-214ENST00000545540 ARCN1P48444 511 aaKnown RBP15.17■□□□□ 0.02
USP28-214ENST00000545540 ARSDP51689 593 aa15.17■□□□□ 0.02
USP28-214ENST00000545540 PCID2Q5JVF3 399 aa15.17■□□□□ 0.02
USP28-214ENST00000545540 NEPROQ6NW34 567 aa15.17■□□□□ 0.02
USP28-214ENST00000545540 RP9Q8TA86 221 aaKnown RBP15.17■□□□□ 0.02
USP28-214ENST00000545540 TMIGD2Q96BF3 282 aa15.17■□□□□ 0.02
USP28-214ENST00000545540 SERPINI1Q99574 410 aa15.17■□□□□ 0.02
USP28-214ENST00000545540 AGO3Q9H9G7 860 aaKnown RBP15.17■□□□□ 0.02
USP28-214ENST00000545540 GLOD4Q9HC38 313 aa15.17■□□□□ 0.02
USP28-214ENST00000545540 CNGB3Q9NQW8 809 aa15.17■□□□□ 0.02
USP28-214ENST00000545540 ARHGEF38Q9NXL2 777 aa15.17■□□□□ 0.02
USP28-214ENST00000545540 SBF1O95248 1867 aa15.17■□□□□ 0.02
USP28-214ENST00000545540 RBM47A0AV96 593 aaKnown RBP15.17■□□□□ 0.02
USP28-214ENST00000545540 TARM1B6A8C7 271 aa15.17■□□□□ 0.02
USP28-214ENST00000545540 MAFKO60675 156 aa15.17■□□□□ 0.02
USP28-214ENST00000545540 GPC4O75487 556 aa15.17■□□□□ 0.02
USP28-214ENST00000545540 SCNN1AP37088 669 aa15.17■□□□□ 0.02
USP28-214ENST00000545540 CD86P42081 329 aa15.17■□□□□ 0.02
USP28-214ENST00000545540 CDH15P55291 814 aa15.17■□□□□ 0.02
USP28-214ENST00000545540 PSME3P61289 254 aa15.17■□□□□ 0.02
USP28-214ENST00000545540 ECT2LQ008S8 904 aa15.17■□□□□ 0.02
USP28-214ENST00000545540 SULT2A1Q06520 285 aa15.17■□□□□ 0.02
USP28-214ENST00000545540 NSUN2Q08J23 767 aaKnown RBP eCLIP15.17■□□□□ 0.02
USP28-214ENST00000545540 PLA2G4EQ3MJ16 856 aa15.17■□□□□ 0.02
USP28-214ENST00000545540 BTBD8Q5XKL5 378 aa15.17■□□□□ 0.02
USP28-214ENST00000545540 SCIMPQ6UWF3 145 aa15.17■□□□□ 0.02
USP28-214ENST00000545540 PLEKHH3Q7Z736 793 aa15.17■□□□□ 0.02
USP28-214ENST00000545540 IFNEQ86WN2 208 aa15.17■□□□□ 0.02
USP28-214ENST00000545540 SHCBP1Q8NEM2 672 aa15.17■□□□□ 0.02
USP28-214ENST00000545540 C3orf30Q96M34 536 aa15.17■□□□□ 0.02
USP28-214ENST00000545540 KCNA7Q96RP8 456 aa15.17■□□□□ 0.02
USP28-214ENST00000545540 SLC29A1Q99808 456 aa15.17■□□□□ 0.02
USP28-214ENST00000545540 KIFC1Q9BW19 673 aa15.17■□□□□ 0.02
USP28-214ENST00000545540 NOL11Q9H8H0 719 aaKnown RBP15.17■□□□□ 0.02
USP28-214ENST00000545540 COQ10BQ9H8M1 238 aa15.17■□□□□ 0.02
USP28-214ENST00000545540 FAM105AQ9NUU6 356 aa15.17■□□□□ 0.02
USP28-214ENST00000545540 NCKIPSDQ9NZQ3 722 aa15.17■□□□□ 0.02
USP28-214ENST00000545540 MARCH4Q9P2E8 410 aaPredicted RBP15.17■□□□□ 0.02
USP28-214ENST00000545540 RIMS3Q9UJD0 308 aa15.17■□□□□ 0.02
USP28-214ENST00000545540 C7orf72A4D263 438 aa15.17■□□□□ 0.02
USP28-214ENST00000545540 PRORSD1PA6NEY8 169 aa15.17■□□□□ 0.02
USP28-214ENST00000545540 SEC24DO94855 1032 aaPredicted RBP15.17■□□□□ 0.02
USP28-214ENST00000545540 MT-ND1P03886 318 aa15.17■□□□□ 0.02
USP28-214ENST00000545540 CPB1P15086 417 aa15.17■□□□□ 0.02
USP28-214ENST00000545540 GRIK1P39086 918 aa15.17■□□□□ 0.02
USP28-214ENST00000545540 CSE1LP55060 971 aaKnown RBP15.17■□□□□ 0.02
USP28-214ENST00000545540 ADGRE1Q14246 886 aa15.17■□□□□ 0.02
USP28-214ENST00000545540 RARS2Q5T160 578 aaKnown RBP15.17■□□□□ 0.02
USP28-214ENST00000545540 ADGRG6Q86SQ4 1221 aa15.17■□□□□ 0.02
USP28-214ENST00000545540 ESAMQ96AP7 390 aa15.17■□□□□ 0.02
USP28-214ENST00000545540 VCX3BQ9H321 246 aa15.17■□□□□ 0.02
USP28-214ENST00000545540 NMUR1Q9HB89 426 aa15.17■□□□□ 0.02
USP28-214ENST00000545540 TRHDEQ9UKU6 1024 aa15.17■□□□□ 0.02
USP28-214ENST00000545540 PLXNA1Q9UIW2 1896 aa15.17■□□□□ 0.02
USP28-214ENST00000545540 LOC285556D6RIA3 1793 aa15.16■□□□□ 0.02
USP28-214ENST00000545540 PLOD2O00469 737 aa15.16■□□□□ 0.02
USP28-214ENST00000545540 UBFD1O14562 309 aaKnown RBP15.16■□□□□ 0.02
USP28-214ENST00000545540 TSPAN3O60637 253 aa15.16■□□□□ 0.02
USP28-214ENST00000545540 TIPRLO75663 272 aa15.16■□□□□ 0.02
USP28-214ENST00000545540 CNTN5O94779 1100 aa15.16■□□□□ 0.02
USP28-214ENST00000545540 HAPLN1P10915 354 aaPredicted RBP15.16■□□□□ 0.02
USP28-214ENST00000545540 WNT3AP56704 352 aa15.16■□□□□ 0.02
USP28-214ENST00000545540 DSC2Q02487 901 aa15.16■□□□□ 0.02
USP28-214ENST00000545540 CAPRIN1Q14444 709 aaKnown RBP15.16■□□□□ 0.02
USP28-214ENST00000545540 FAM83EQ2M2I3 478 aa15.16■□□□□ 0.02
USP28-214ENST00000545540 IQSEC1Q6DN90 963 aa15.16■□□□□ 0.02
USP28-214ENST00000545540 ZBTB46Q86UZ6 589 aa15.16■□□□□ 0.02
USP28-214ENST00000545540 MIB1Q86YT6 1006 aa15.16■□□□□ 0.02
USP28-214ENST00000545540 PPHLN1Q8NEY8 458 aaKnown RBP15.16■□□□□ 0.02
USP28-214ENST00000545540 LPGAT1Q92604 370 aa15.16■□□□□ 0.02
USP28-214ENST00000545540 ISL2Q96A47 359 aa15.16■□□□□ 0.02
USP28-214ENST00000545540 MRGPRX2Q96LB1 330 aa15.16■□□□□ 0.02
USP28-214ENST00000545540 MCMBPQ9BTE3 642 aa15.16■□□□□ 0.02
USP28-214ENST00000545540 MRPL46Q9H2W6 279 aaKnown RBP15.16■□□□□ 0.02
USP28-214ENST00000545540 FAM96AQ9H5X1 160 aa15.16■□□□□ 0.02
USP28-214ENST00000545540 CROCCQ5TZA2 2017 aa15.16■□□□□ 0.02
USP28-214ENST00000545540 MBLAC1A4D2B0 266 aaPredicted RBP15.16■□□□□ 0.02
USP28-214ENST00000545540 ZNF839A8K0R7 811 aa15.16■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms