RNA–Protein interactions for RNA: ENST00000542033.5

USP28-210, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 852 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-210ENST00000542033 GPD2P43304 727 aa3.42□□□□□ -1.86
USP28-210ENST00000542033 PTPN9P43378 593 aa3.42□□□□□ -1.86
USP28-210ENST00000542033 CD151P48509 253 aa3.42□□□□□ -1.86
USP28-210ENST00000542033 POLD2P49005 469 aa3.42□□□□□ -1.86
USP28-210ENST00000542033 ENTPD1P49961 510 aa3.42□□□□□ -1.86
USP28-210ENST00000542033 CCR9P51686 369 aa3.42□□□□□ -1.86
USP28-210ENST00000542033 GALNT2Q10471 571 aa3.42□□□□□ -1.86
USP28-210ENST00000542033 TRDNQ13061 729 aa3.42□□□□□ -1.86
USP28-210ENST00000542033 ERV3-1Q14264 604 aa3.42□□□□□ -1.86
USP28-210ENST00000542033 SLC18A3Q16572 532 aa3.42□□□□□ -1.86
USP28-210ENST00000542033 NFIL3Q16649 462 aa3.42□□□□□ -1.86
USP28-210ENST00000542033 LEXMQ3ZCV2 418 aa3.42□□□□□ -1.86
USP28-210ENST00000542033 WASHC2DQ5SRD0 308 aa3.42□□□□□ -1.86
USP28-210ENST00000542033 ASPHD1Q5U4P2 390 aa3.42□□□□□ -1.86
USP28-210ENST00000542033 FAM205BPQ63HN1 556 aa3.42□□□□□ -1.86
USP28-210ENST00000542033 NAPEPLDQ6IQ20 393 aa3.42□□□□□ -1.86
USP28-210ENST00000542033 HEPHL1Q6MZM0 1159 aa3.42□□□□□ -1.86
USP28-210ENST00000542033 CCDC129Q6ZRS4 1044 aa3.42□□□□□ -1.86
USP28-210ENST00000542033 R3HCC1LQ7Z5L2 792 aaKnown RBP3.42□□□□□ -1.86
USP28-210ENST00000542033 ADGRG6Q86SQ4 1221 aa3.42□□□□□ -1.86
USP28-210ENST00000542033 SERPINA11Q86U17 422 aa3.42□□□□□ -1.86
USP28-210ENST00000542033 CHD1LQ86WJ1 897 aa3.42□□□□□ -1.86
USP28-210ENST00000542033 PALB2Q86YC2 1186 aa3.42□□□□□ -1.86
USP28-210ENST00000542033 TMC8Q8IU68 726 aa3.42□□□□□ -1.86
USP28-210ENST00000542033 CREBRFQ8IUR6 639 aa3.42□□□□□ -1.86
USP28-210ENST00000542033 NGEFQ8N5V2 710 aa3.42□□□□□ -1.86
USP28-210ENST00000542033 GABPB2Q8TAK5 448 aaPredicted RBP3.42□□□□□ -1.86
USP28-210ENST00000542033 NAF1Q96HR8 494 aaKnown RBP3.42□□□□□ -1.86
USP28-210ENST00000542033 NCAPGQ9BPX3 1015 aa3.42□□□□□ -1.86
USP28-210ENST00000542033 CCDC94Q9BW85 323 aaPredicted RBP3.42□□□□□ -1.86
USP28-210ENST00000542033 CXorf56Q9H5V9 222 aa3.42□□□□□ -1.86
USP28-210ENST00000542033 PRKRIP1Q9H875 184 aaPredicted RBP3.42□□□□□ -1.86
USP28-210ENST00000542033 MED4Q9NPJ6 270 aa3.42□□□□□ -1.86
USP28-210ENST00000542033 SMYD2Q9NRG4 433 aa3.42□□□□□ -1.86
USP28-210ENST00000542033 SIRT3Q9NTG7 399 aaPredicted RBP3.42□□□□□ -1.86
USP28-210ENST00000542033 DONSONQ9NYP3 566 aa3.42□□□□□ -1.86
USP28-210ENST00000542033 NLKQ9UBE8 527 aa3.42□□□□□ -1.86
USP28-210ENST00000542033 SEL1LQ9UBV2 794 aa3.42□□□□□ -1.86
USP28-210ENST00000542033 ISY1Q9ULR0 285 aaKnown RBP3.42□□□□□ -1.86
USP28-210ENST00000542033 HSF4Q9ULV5 492 aa3.42□□□□□ -1.86
USP28-210ENST00000542033 SYNRGQ9UMZ2 1314 aa3.42□□□□□ -1.86
USP28-210ENST00000542033 SCRIBQ14160 1630 aa3.41□□□□□ -1.86
USP28-210ENST00000542033 NINLQ9Y2I6 1382 aa3.41□□□□□ -1.86
USP28-210ENST00000542033 A0A096LPK6 155 aa3.41□□□□□ -1.86
USP28-210ENST00000542033 CD8B2A6NJW9 211 aa3.41□□□□□ -1.86
USP28-210ENST00000542033 FAM90A7PA6NKC0 464 aa3.41□□□□□ -1.86
USP28-210ENST00000542033 FAM90A22PA8MWA6 464 aa3.41□□□□□ -1.86
USP28-210ENST00000542033 FAM90A12PA8MX19 464 aa3.41□□□□□ -1.86
USP28-210ENST00000542033 FAM90A23PA8MXZ1 464 aa3.41□□□□□ -1.86
USP28-210ENST00000542033 HSPB6O14558 160 aa3.41□□□□□ -1.86
USP28-210ENST00000542033 DYNC1I1O14576 645 aa3.41□□□□□ -1.86
USP28-210ENST00000542033 TSPAN4O14817 238 aa3.41□□□□□ -1.86
USP28-210ENST00000542033 PER2O15055 1255 aa3.41□□□□□ -1.86
USP28-210ENST00000542033 SPTLC2O15270 562 aa3.41□□□□□ -1.86
USP28-210ENST00000542033 CYP1A2P05177 515 aa3.41□□□□□ -1.86
USP28-210ENST00000542033 FGF2P09038 288 aa3.41□□□□□ -1.86
USP28-210ENST00000542033 ENO3P13929 434 aaPredicted RBP3.41□□□□□ -1.86
USP28-210ENST00000542033 CHRNB2P17787 502 aa3.41□□□□□ -1.86
USP28-210ENST00000542033 PSMA4P25789 261 aaKnown RBP3.41□□□□□ -1.86
USP28-210ENST00000542033 AVPR1AP37288 418 aa3.41□□□□□ -1.86
USP28-210ENST00000542033 PAFAH1B1P43034 410 aa3.41□□□□□ -1.86
USP28-210ENST00000542033 GPR12P47775 334 aa3.41□□□□□ -1.86
USP28-210ENST00000542033 RASSF2P50749 326 aa3.41□□□□□ -1.86
USP28-210ENST00000542033 P2RX3P56373 397 aa3.41□□□□□ -1.86
USP28-210ENST00000542033 FHL1Q13642 323 aa3.41□□□□□ -1.86
USP28-210ENST00000542033 CAMK1Q14012 370 aa3.41□□□□□ -1.86
USP28-210ENST00000542033 EIF4A2Q14240 407 aaKnown RBP3.41□□□□□ -1.86
USP28-210ENST00000542033 GPR18Q14330 331 aa3.41□□□□□ -1.86
USP28-210ENST00000542033 RPE65Q16518 533 aa3.41□□□□□ -1.86
USP28-210ENST00000542033 EDRF1Q3B7T1 1238 aa3.41□□□□□ -1.86
USP28-210ENST00000542033 FBXO43Q4G163 708 aa3.41□□□□□ -1.86
USP28-210ENST00000542033 NCAPH2Q6IBW4 605 aa3.41□□□□□ -1.86
USP28-210ENST00000542033 SLC22A25Q6T423 547 aa3.41□□□□□ -1.86
USP28-210ENST00000542033 IL20RBQ6UXL0 311 aa3.41□□□□□ -1.86
USP28-210ENST00000542033 Q6ZTK2 550 aa3.41□□□□□ -1.86
USP28-210ENST00000542033 KRT77Q7Z794 578 aa3.41□□□□□ -1.86
USP28-210ENST00000542033 RPAINQ86UA6 219 aa3.41□□□□□ -1.86
USP28-210ENST00000542033 RPAP2Q8IXW5 612 aaPredicted RBP3.41□□□□□ -1.86
USP28-210ENST00000542033 ZDHHC23Q8IYP9 409 aa3.41□□□□□ -1.86
USP28-210ENST00000542033 C9orf106Q8NAJ2 232 aa3.41□□□□□ -1.86
USP28-210ENST00000542033 KDM1BQ8NB78 822 aa3.41□□□□□ -1.86
USP28-210ENST00000542033 C7orf57Q8NEG2 295 aa3.41□□□□□ -1.86
USP28-210ENST00000542033 RFWD2Q8NHY2 731 aa3.41□□□□□ -1.86
USP28-210ENST00000542033 NFKBIDQ8NI38 313 aa3.41□□□□□ -1.86
USP28-210ENST00000542033 CEP76Q8TAP6 659 aa3.41□□□□□ -1.86
USP28-210ENST00000542033 ZCCHC10Q8TBK6 192 aa3.41□□□□□ -1.86
USP28-210ENST00000542033 BICD2Q8TD16 824 aa3.41□□□□□ -1.86
USP28-210ENST00000542033 RAB40AQ8WXH6 277 aa3.41□□□□□ -1.86
USP28-210ENST00000542033 INPP5DQ92835 1189 aa3.41□□□□□ -1.86
USP28-210ENST00000542033 ATOH1Q92858 354 aaPredicted RBP3.41□□□□□ -1.86
USP28-210ENST00000542033 APOPT1Q96IL0 206 aa3.41□□□□□ -1.86
USP28-210ENST00000542033 WDR77Q9BQA1 342 aaPredicted RBP3.41□□□□□ -1.86
USP28-210ENST00000542033 FUZQ9BT04 418 aa3.41□□□□□ -1.86
USP28-210ENST00000542033 WACQ9BTA9 647 aa3.41□□□□□ -1.86
USP28-210ENST00000542033 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP3.41□□□□□ -1.86
USP28-210ENST00000542033 POLDIP3Q9BY77 421 aaKnown RBP3.41□□□□□ -1.86
USP28-210ENST00000542033 RBM38Q9H0Z9 239 aaKnown RBP3.41□□□□□ -1.86
USP28-210ENST00000542033 EBF3Q9H4W6 596 aa3.41□□□□□ -1.86
USP28-210ENST00000542033 EPHX3Q9H6B9 360 aa3.41□□□□□ -1.86
USP28-210ENST00000542033 SUDS3Q9H7L9 328 aaPredicted RBP3.41□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms