RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 YWHAQP27348 245 aa17.06■□□□□ 0.32
USP28-208ENST00000540438 PIK3R1P27986 724 aa17.06■□□□□ 0.32
USP28-208ENST00000540438 MLLT6P55198 1093 aaPredicted RBP17.06■□□□□ 0.32
USP28-208ENST00000540438 ACTR3P61158 418 aa17.06■□□□□ 0.32
USP28-208ENST00000540438 SEMG2Q02383 582 aa17.06■□□□□ 0.32
USP28-208ENST00000540438 TRIP10Q15642 601 aa17.06■□□□□ 0.32
USP28-208ENST00000540438 MARC1Q5VT66 337 aa17.06■□□□□ 0.32
USP28-208ENST00000540438 SCIMPQ6UWF3 145 aa17.06■□□□□ 0.32
USP28-208ENST00000540438 DPF3Q92784 378 aa17.06■□□□□ 0.32
USP28-208ENST00000540438 PGAP3Q96FM1 320 aaPredicted RBP17.06■□□□□ 0.32
USP28-208ENST00000540438 SEMA3CQ99985 751 aa17.06■□□□□ 0.32
USP28-208ENST00000540438 OSBPL2Q9H1P3 480 aa17.06■□□□□ 0.32
USP28-208ENST00000540438 CATSPERBQ9H7T0 1116 aa17.06■□□□□ 0.32
USP28-208ENST00000540438 BPIFA1Q9NP55 256 aa17.06■□□□□ 0.32
USP28-208ENST00000540438 SMPD4Q9NXE4 827 aa17.06■□□□□ 0.32
USP28-208ENST00000540438 CCDC167Q9P0B6 97 aa17.06■□□□□ 0.32
USP28-208ENST00000540438 FAM50BQ9Y247 325 aa17.06■□□□□ 0.32
USP28-208ENST00000540438 AAR2Q9Y312 384 aaKnown RBP17.06■□□□□ 0.32
USP28-208ENST00000540438 TSC2P49815 1807 aa17.06■□□□□ 0.32
USP28-208ENST00000540438 RAG1P15918 1043 aa17.06■□□□□ 0.32
USP28-208ENST00000540438 CCNCP24863 283 aa17.06■□□□□ 0.32
USP28-208ENST00000540438 RPL14P50914 215 aaKnown RBP17.06■□□□□ 0.32
USP28-208ENST00000540438 CDKN2DP55273 166 aa17.06■□□□□ 0.32
USP28-208ENST00000540438 RPS24P62847 133 aaKnown RBP17.06■□□□□ 0.32
USP28-208ENST00000540438 RNF19BQ6ZMZ0 732 aa17.06■□□□□ 0.32
USP28-208ENST00000540438 TRIM67Q6ZTA4 783 aa17.06■□□□□ 0.32
USP28-208ENST00000540438 SUSD3Q96L08 255 aa17.06■□□□□ 0.32
USP28-208ENST00000540438 NACA2Q9H009 215 aa17.06■□□□□ 0.32
USP28-208ENST00000540438 DSEQ9UL01 958 aa17.06■□□□□ 0.32
USP28-208ENST00000540438 CDY1Q9Y6F8 540 aa17.06■□□□□ 0.32
USP28-208ENST00000540438 UBA6A0AVT1 1052 aaPredicted RBP17.05■□□□□ 0.32
USP28-208ENST00000540438 VCANP13611 3396 aa17.05■□□□□ 0.32
USP28-208ENST00000540438 CDKN1CP49918 316 aaPredicted RBP17.05■□□□□ 0.32
USP28-208ENST00000540438 PRAMEP78395 509 aa17.05■□□□□ 0.32
USP28-208ENST00000540438 SLC12A1Q13621 1099 aa17.05■□□□□ 0.32
USP28-208ENST00000540438 PLA2G4EQ3MJ16 856 aa17.05■□□□□ 0.32
USP28-208ENST00000540438 TMEM207Q6UWW9 146 aa17.05■□□□□ 0.32
USP28-208ENST00000540438 LINGO4Q6UY18 593 aa17.05■□□□□ 0.32
USP28-208ENST00000540438 CYS1Q717R9 158 aa17.05■□□□□ 0.32
USP28-208ENST00000540438 RTL3Q8N8U3 475 aaKnown RBP17.05■□□□□ 0.32
USP28-208ENST00000540438 SCLYQ96I15 445 aa17.05■□□□□ 0.32
USP28-208ENST00000540438 DNAJC1Q96KC8 554 aaKnown RBP17.05■□□□□ 0.32
USP28-208ENST00000540438 PCDHGB4Q9UN71 923 aa17.05■□□□□ 0.32
USP28-208ENST00000540438 PCDHGB5Q9Y5G0 923 aa17.05■□□□□ 0.32
USP28-208ENST00000540438 A8MX80 341 aa17.05■□□□□ 0.32
USP28-208ENST00000540438 LINGO3P0C6S8 592 aa17.05■□□□□ 0.32
USP28-208ENST00000540438 XRCC1P18887 633 aaPredicted RBP17.05■□□□□ 0.32
USP28-208ENST00000540438 GCKP35557 465 aa17.05■□□□□ 0.32
USP28-208ENST00000540438 DPP6P42658 865 aa17.05■□□□□ 0.32
USP28-208ENST00000540438 HCAR3P49019 387 aa17.05■□□□□ 0.32
USP28-208ENST00000540438 ATN1P54259 1190 aaPredicted RBP17.05■□□□□ 0.32
USP28-208ENST00000540438 ECT2LQ008S8 904 aa17.05■□□□□ 0.32
USP28-208ENST00000540438 RALGDSQ12967 914 aa17.05■□□□□ 0.32
USP28-208ENST00000540438 SFT2D3Q587I9 215 aa17.05■□□□□ 0.32
USP28-208ENST00000540438 LIPMQ5VYY2 423 aa17.05■□□□□ 0.32
USP28-208ENST00000540438 RPL10LQ96L21 214 aaKnown RBP17.05■□□□□ 0.32
USP28-208ENST00000540438 MARCH2Q9P0N8 246 aa17.05■□□□□ 0.32
USP28-208ENST00000540438 M0QZQ0 153 aa17.05■□□□□ 0.32
USP28-208ENST00000540438 SMNDC1O75940 238 aaKnown RBP eCLIP17.05■□□□□ 0.32
USP28-208ENST00000540438 ANXA9O76027 345 aa17.05■□□□□ 0.32
USP28-208ENST00000540438 SUPT7LO94864 414 aa17.05■□□□□ 0.32
USP28-208ENST00000540438 KLHL2O95198 593 aa17.05■□□□□ 0.32
USP28-208ENST00000540438 MPOP05164 745 aa17.05■□□□□ 0.32
USP28-208ENST00000540438 CD151P48509 253 aa17.05■□□□□ 0.32
USP28-208ENST00000540438 THOP1P52888 689 aa17.05■□□□□ 0.32
USP28-208ENST00000540438 FCGRTP55899 365 aa17.05■□□□□ 0.32
USP28-208ENST00000540438 BLMHQ13867 455 aa17.05■□□□□ 0.32
USP28-208ENST00000540438 ARTNQ5T4W7 220 aa17.05■□□□□ 0.32
USP28-208ENST00000540438 MRPL10Q7Z7H8 261 aaKnown RBP17.05■□□□□ 0.32
USP28-208ENST00000540438 NUP93Q8N1F7 819 aa17.05■□□□□ 0.32
USP28-208ENST00000540438 DBF4BQ8NFT6 615 aa17.05■□□□□ 0.32
USP28-208ENST00000540438 IL12RB2Q99665 862 aa17.05■□□□□ 0.32
USP28-208ENST00000540438 PCDHAC1Q9H158 963 aa17.05■□□□□ 0.32
USP28-208ENST00000540438 SF3B1O75533 1304 aaKnown RBP eCLIP17.04■□□□□ 0.328e-6■■■■■ 107
USP28-208ENST00000540438 AQP4P55087 323 aa17.04■□□□□ 0.32
USP28-208ENST00000540438 C1QTNF8P60827 252 aa17.04■□□□□ 0.32
USP28-208ENST00000540438 COG7P83436 770 aa17.04■□□□□ 0.32
USP28-208ENST00000540438 DSC3Q14574 896 aa17.04■□□□□ 0.32
USP28-208ENST00000540438 RTP2Q5QGT7 225 aa17.04■□□□□ 0.32
USP28-208ENST00000540438 RANBP10Q6VN20 620 aa17.04■□□□□ 0.32
USP28-208ENST00000540438 LMNTD2Q8IXW0 634 aa17.04■□□□□ 0.32
USP28-208ENST00000540438 ABI1Q8IZP0 508 aa17.04■□□□□ 0.32
USP28-208ENST00000540438 FCRL5Q96RD9 977 aa17.04■□□□□ 0.32
USP28-208ENST00000540438 KCNA7Q96RP8 456 aa17.04■□□□□ 0.32
USP28-208ENST00000540438 SMOC2Q9H3U7 446 aa17.04■□□□□ 0.32
USP28-208ENST00000540438 MYLKQ15746 1914 aa17.04■□□□□ 0.32
USP28-208ENST00000540438 MATN2O00339 956 aa17.04■□□□□ 0.32
USP28-208ENST00000540438 MTSS1O43312 755 aa17.04■□□□□ 0.32
USP28-208ENST00000540438 MAGEC1O60732 1142 aa17.04■□□□□ 0.32
USP28-208ENST00000540438 HNRNPCL1O60812 293 aaKnown RBP17.04■□□□□ 0.32
USP28-208ENST00000540438 DNAJA2O60884 412 aa17.04■□□□□ 0.32
USP28-208ENST00000540438 IGLV3-25P01717 112 aa17.04■□□□□ 0.32
USP28-208ENST00000540438 SCNN1BP51168 640 aa17.04■□□□□ 0.32
USP28-208ENST00000540438 RAP1GDS1P52306 607 aa17.04■□□□□ 0.32
USP28-208ENST00000540438 ACLYP53396 1101 aa17.04■□□□□ 0.32
USP28-208ENST00000540438 DNAL1Q4LDG9 190 aa17.04■□□□□ 0.32
USP28-208ENST00000540438 SIRPB2Q5JXA9 342 aa17.04■□□□□ 0.32
USP28-208ENST00000540438 GALNT4Q8N4A0 578 aa17.04■□□□□ 0.32
USP28-208ENST00000540438 OR13J1Q8NGT2 312 aa17.04■□□□□ 0.32
USP28-208ENST00000540438 OR6K2Q8NGY2 324 aa17.04■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 88.4 ms