RNA–Protein interactions for RNA: ENST00000538475.5

USP28-207, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 1,081 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-207ENST00000538475 FBXO8Q9NRD0 319 aa6.78□□□□□ -1.32
USP28-207ENST00000538475 TOPORSQ9NS56 1045 aaPredicted RBP6.78□□□□□ -1.32
USP28-207ENST00000538475 ANKEF1Q9NU02 776 aa6.78□□□□□ -1.32
USP28-207ENST00000538475 GMIPQ9P107 970 aa6.78□□□□□ -1.32
USP28-207ENST00000538475 EBF1Q9UH73 591 aa6.78□□□□□ -1.32
USP28-207ENST00000538475 DAPK2Q9UIK4 370 aa6.78□□□□□ -1.32
USP28-207ENST00000538475 RNF112Q9ULX5 631 aa6.78□□□□□ -1.32
USP28-207ENST00000538475 TCAF1Q9Y4C2 921 aa6.78□□□□□ -1.32
USP28-207ENST00000538475 ANGPTL3Q9Y5C1 460 aa6.78□□□□□ -1.32
USP28-207ENST00000538475 CNTNAP2Q9UHC6 1331 aa6.77□□□□□ -1.32
USP28-207ENST00000538475 COL14A1Q05707 1796 aaKnown RBP6.77□□□□□ -1.33
USP28-207ENST00000538475 ILVBLA1L0T0 632 aa6.77□□□□□ -1.33
USP28-207ENST00000538475 HEATR9A2RTY3 570 aa6.77□□□□□ -1.33
USP28-207ENST00000538475 ANKRD34BA5PLL1 514 aa6.77□□□□□ -1.33
USP28-207ENST00000538475 SLC15A5A6NIM6 579 aa6.77□□□□□ -1.33
USP28-207ENST00000538475 SAGE2PA6NJ88 616 aa6.77□□□□□ -1.33
USP28-207ENST00000538475 GOLGA8SH3BPF8 625 aa6.77□□□□□ -1.33
USP28-207ENST00000538475 NOP56O00567 594 aaKnown RBP6.77□□□□□ -1.33
USP28-207ENST00000538475 XPOTO43592 962 aaKnown RBP6.77□□□□□ -1.33
USP28-207ENST00000538475 TRIM13O60858 407 aa6.77□□□□□ -1.33
USP28-207ENST00000538475 UFL1O94874 794 aa6.77□□□□□ -1.33
USP28-207ENST00000538475 LDHAP00338 332 aaKnown RBP6.77□□□□□ -1.33
USP28-207ENST00000538475 ADRB2P07550 413 aa6.77□□□□□ -1.33
USP28-207ENST00000538475 UMPSP11172 480 aa6.77□□□□□ -1.33
USP28-207ENST00000538475 MBL2P11226 248 aaPredicted RBP6.77□□□□□ -1.33
USP28-207ENST00000538475 DRD2P14416 443 aa6.77□□□□□ -1.33
USP28-207ENST00000538475 HOXB6P17509 224 aaKnown RBP6.77□□□□□ -1.33
USP28-207ENST00000538475 ACO1P21399 889 aaKnown RBP6.77□□□□□ -1.33
USP28-207ENST00000538475 IL10P22301 178 aa6.77□□□□□ -1.33
USP28-207ENST00000538475 TGM1P22735 817 aa6.77□□□□□ -1.33
USP28-207ENST00000538475 GABRB3P28472 473 aa6.77□□□□□ -1.33
USP28-207ENST00000538475 EPHA3P29320 983 aa6.77□□□□□ -1.33
USP28-207ENST00000538475 CD40LGP29965 261 aa6.77□□□□□ -1.33
USP28-207ENST00000538475 GNA15P30679 374 aa6.77□□□□□ -1.33
USP28-207ENST00000538475 ATP4BP51164 291 aa6.77□□□□□ -1.33
USP28-207ENST00000538475 ZNF132P52740 706 aa6.77□□□□□ -1.33
USP28-207ENST00000538475 RHBDL3P58872 404 aa6.77□□□□□ -1.33
USP28-207ENST00000538475 GABARAPL2P60520 117 aa6.77□□□□□ -1.33
USP28-207ENST00000538475 STX1BP61266 288 aa6.77□□□□□ -1.33
USP28-207ENST00000538475 PSMC5P62195 406 aa6.77□□□□□ -1.33
USP28-207ENST00000538475 YWHAEP62258 255 aaKnown RBP6.77□□□□□ -1.33
USP28-207ENST00000538475 BASP1P80723 227 aaKnown RBP6.77□□□□□ -1.33
USP28-207ENST00000538475 CHRNEQ04844 493 aa6.77□□□□□ -1.33
USP28-207ENST00000538475 NFIAQ12857 509 aa6.77□□□□□ -1.33
USP28-207ENST00000538475 MERTKQ12866 999 aa6.77□□□□□ -1.33
USP28-207ENST00000538475 EPS8Q12929 822 aa6.77□□□□□ -1.33
USP28-207ENST00000538475 BNIP2Q12982 314 aa6.77□□□□□ -1.33
USP28-207ENST00000538475 ITGADQ13349 1161 aa6.77□□□□□ -1.33
USP28-207ENST00000538475 CUL2Q13617 745 aa6.77□□□□□ -1.33
USP28-207ENST00000538475 E2F2Q14209 437 aa6.77□□□□□ -1.33
USP28-207ENST00000538475 DSC3Q14574 896 aa6.77□□□□□ -1.33
USP28-207ENST00000538475 INPP5AQ14642 412 aa6.77□□□□□ -1.33
USP28-207ENST00000538475 RAB39AQ14964 217 aa6.77□□□□□ -1.33
USP28-207ENST00000538475 ARHGEF6Q15052 776 aa6.77□□□□□ -1.33
USP28-207ENST00000538475 PDK2Q15119 407 aa6.77□□□□□ -1.33
USP28-207ENST00000538475 CHRNA2Q15822 529 aa6.77□□□□□ -1.33
USP28-207ENST00000538475 ZACNQ401N2 412 aa6.77□□□□□ -1.33
USP28-207ENST00000538475 ANKDD1AQ495B1 522 aa6.77□□□□□ -1.33
USP28-207ENST00000538475 RPS26P11Q5JNZ5 115 aaPredicted RBP6.77□□□□□ -1.33
USP28-207ENST00000538475 AARS2Q5JTZ9 985 aaKnown RBP6.77□□□□□ -1.33
USP28-207ENST00000538475 RBM48Q5RL73 367 aaKnown RBP6.77□□□□□ -1.33
USP28-207ENST00000538475 ARTNQ5T4W7 220 aa6.77□□□□□ -1.33
USP28-207ENST00000538475 N4BP2L1Q5TBK1 243 aaPredicted RBP6.77□□□□□ -1.33
USP28-207ENST00000538475 GRTP1Q5TC63 336 aa6.77□□□□□ -1.33
USP28-207ENST00000538475 BROXQ5VW32 411 aa6.77□□□□□ -1.33
USP28-207ENST00000538475 CES4AQ5XG92 561 aa6.77□□□□□ -1.33
USP28-207ENST00000538475 KAZNQ674X7 775 aa6.77□□□□□ -1.33
USP28-207ENST00000538475 DARS2Q6PI48 645 aaKnown RBP6.77□□□□□ -1.33
USP28-207ENST00000538475 ZNF773Q6PK81 442 aa6.77□□□□□ -1.33
USP28-207ENST00000538475 MAVSQ7Z434 540 aa6.77□□□□□ -1.33
USP28-207ENST00000538475 SPRED1Q7Z699 444 aa6.77□□□□□ -1.33
USP28-207ENST00000538475 IGFN1Q86VF2 1251 aa6.77□□□□□ -1.33
USP28-207ENST00000538475 SNX32Q86XE0 403 aa6.77□□□□□ -1.33
USP28-207ENST00000538475 ERO1BQ86YB8 467 aa6.77□□□□□ -1.33
USP28-207ENST00000538475 IGDCC3Q8IVU1 814 aa6.77□□□□□ -1.33
USP28-207ENST00000538475 CCDC60Q8IWA6 550 aaPredicted RBP6.77□□□□□ -1.33
USP28-207ENST00000538475 GPD1LQ8N335 351 aa6.77□□□□□ -1.33
USP28-207ENST00000538475 ELMOD1Q8N336 334 aa6.77□□□□□ -1.33
USP28-207ENST00000538475 PARP8Q8N3A8 854 aa6.77□□□□□ -1.33
USP28-207ENST00000538475 SLC15A4Q8N697 577 aa6.77□□□□□ -1.33
USP28-207ENST00000538475 HIPK4Q8NE63 616 aa6.77□□□□□ -1.33
USP28-207ENST00000538475 RDM1Q8NG50 284 aa6.77□□□□□ -1.33
USP28-207ENST00000538475 TAS1R2Q8TE23 839 aa6.77□□□□□ -1.33
USP28-207ENST00000538475 POP5Q969H6 163 aaKnown RBP6.77□□□□□ -1.33
USP28-207ENST00000538475 CCDC127Q96BQ5 260 aa6.77□□□□□ -1.33
USP28-207ENST00000538475 FAF2Q96CS3 445 aa6.77□□□□□ -1.33
USP28-207ENST00000538475 SNX18Q96RF0 628 aa6.77□□□□□ -1.33
USP28-207ENST00000538475 CBWD1Q9BRT8 395 aa6.77□□□□□ -1.33
USP28-207ENST00000538475 ADI1Q9BV57 179 aa6.77□□□□□ -1.33
USP28-207ENST00000538475 KIFC3Q9BVG8 833 aa6.77□□□□□ -1.33
USP28-207ENST00000538475 OSBPL10Q9BXB5 764 aa6.77□□□□□ -1.33
USP28-207ENST00000538475 BCO2Q9BYV7 579 aa6.77□□□□□ -1.33
USP28-207ENST00000538475 NDEL1Q9GZM8 345 aa6.77□□□□□ -1.33
USP28-207ENST00000538475 SDCBP2Q9H190 292 aa6.77□□□□□ -1.33
USP28-207ENST00000538475 FAM124BQ9H5Z6 455 aaPredicted RBP6.77□□□□□ -1.33
USP28-207ENST00000538475 COG4Q9H9E3 785 aa6.77□□□□□ -1.33
USP28-207ENST00000538475 ZBTB26Q9HCK0 441 aa6.77□□□□□ -1.33
USP28-207ENST00000538475 PRDM11Q9NQV5 511 aa6.77□□□□□ -1.33
USP28-207ENST00000538475 EIF2B3Q9NR50 452 aaKnown RBP6.77□□□□□ -1.33
USP28-207ENST00000538475 CCM2LQ9NUG4 571 aaPredicted RBP6.77□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 77.7 ms