RNA–Protein interactions for RNA: ENST00000537642.1

USP28-204, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 732 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-204ENST00000537642 OR13H1Q8NG92 308 aa14.97□□□□□ -0.01
USP28-204ENST00000537642 FAM71BQ8TC56 605 aa14.97□□□□□ -0.01
USP28-204ENST00000537642 KLHDC7BQ96G42 594 aa14.97□□□□□ -0.01
USP28-204ENST00000537642 SPTLC3Q9NUV7 552 aa14.97□□□□□ -0.01
USP28-204ENST00000537642 CHD8Q9HCK8 2581 aa14.97□□□□□ -0.01
USP28-204ENST00000537642 LRRK1Q38SD2 2015 aa14.97□□□□□ -0.01
USP28-204ENST00000537642 TSPAN11A1L157 253 aa14.96□□□□□ -0.01
USP28-204ENST00000537642 AKR1B15C9JRZ8 316 aaPredicted RBP14.96□□□□□ -0.01
USP28-204ENST00000537642 NEMP1O14524 444 aa14.96□□□□□ -0.01
USP28-204ENST00000537642 MUSKO15146 869 aa14.96□□□□□ -0.01
USP28-204ENST00000537642 HYAL3O43820 417 aaPredicted RBP14.96□□□□□ -0.01
USP28-204ENST00000537642 BUB1BO60566 1050 aaPredicted RBP14.96□□□□□ -0.01
USP28-204ENST00000537642 FTH1P19P0C7X4 201 aa14.96□□□□□ -0.01
USP28-204ENST00000537642 THEGLP0DJG4 465 aa14.96□□□□□ -0.01
USP28-204ENST00000537642 EPHA8P29322 1005 aaPredicted RBP14.96□□□□□ -0.01
USP28-204ENST00000537642 GJC1P36383 396 aa14.96□□□□□ -0.01
USP28-204ENST00000537642 CSNK1DP48730 415 aa14.96□□□□□ -0.01
USP28-204ENST00000537642 TAS2R40P59535 323 aa14.96□□□□□ -0.01
USP28-204ENST00000537642 BNIP3Q12983 259 aa14.96□□□□□ -0.01
USP28-204ENST00000537642 MMRN1Q13201 1228 aa14.96□□□□□ -0.01
USP28-204ENST00000537642 KRT81Q14533 505 aa14.96□□□□□ -0.01
USP28-204ENST00000537642 RFTN1Q14699 578 aaPredicted RBP14.96□□□□□ -0.01
USP28-204ENST00000537642 GRM3Q14832 879 aa14.96□□□□□ -0.01
USP28-204ENST00000537642 ABI3BPQ7Z7G0 1075 aa14.96□□□□□ -0.01
USP28-204ENST00000537642 SRLQ86TD4 932 aa14.96□□□□□ -0.01
USP28-204ENST00000537642 SLCO6A1Q86UG4 719 aa14.96□□□□□ -0.01
USP28-204ENST00000537642 ZSCAN30Q86W11 494 aa14.96□□□□□ -0.01
USP28-204ENST00000537642 CNGA4Q8IV77 575 aa14.96□□□□□ -0.01
USP28-204ENST00000537642 OXR1Q8N573 874 aa14.96□□□□□ -0.01
USP28-204ENST00000537642 SAP25Q8TEE9 199 aa14.96□□□□□ -0.01
USP28-204ENST00000537642 BMFQ96LC9 184 aa14.96□□□□□ -0.01
USP28-204ENST00000537642 CCDC42Q96M95 316 aa14.96□□□□□ -0.01
USP28-204ENST00000537642 CDC6Q99741 560 aa14.96□□□□□ -0.01
USP28-204ENST00000537642 CINPQ9BW66 212 aaPredicted RBP14.96□□□□□ -0.01
USP28-204ENST00000537642 C1QTNF2Q9BXJ5 285 aa14.96□□□□□ -0.01
USP28-204ENST00000537642 TRIM5Q9C035 493 aa14.96□□□□□ -0.01
USP28-204ENST00000537642 SUV39H2Q9H5I1 410 aa14.96□□□□□ -0.01
USP28-204ENST00000537642 RCOR3Q9P2K3 495 aaPredicted RBP14.96□□□□□ -0.01
USP28-204ENST00000537642 HS3ST3A1Q9Y663 406 aa14.96□□□□□ -0.01
USP28-204ENST00000537642 COL5A1P20908 1838 aaPredicted RBP14.95□□□□□ -0.02
USP28-204ENST00000537642 POM121BA6NF01 834 aa14.95□□□□□ -0.02
USP28-204ENST00000537642 YKT6O15498 198 aa14.95□□□□□ -0.02
USP28-204ENST00000537642 MAFKO60675 156 aa14.95□□□□□ -0.02
USP28-204ENST00000537642 PEX11BO96011 259 aa14.95□□□□□ -0.02
USP28-204ENST00000537642 ITGAVP06756 1048 aa14.95□□□□□ -0.02
USP28-204ENST00000537642 ARRB1P49407 418 aaPredicted RBP14.95□□□□□ -0.02
USP28-204ENST00000537642 SLC10A7Q0GE19 358 aa14.95□□□□□ -0.02
USP28-204ENST00000537642 DPYSL3Q14195 570 aa14.95□□□□□ -0.02
USP28-204ENST00000537642 LBRQ14739 615 aaKnown RBP14.95□□□□□ -0.02
USP28-204ENST00000537642 TMCO4Q5TGY1 634 aa14.95□□□□□ -0.02
USP28-204ENST00000537642 KANSL1Q7Z3B3 1105 aa14.95□□□□□ -0.02
USP28-204ENST00000537642 ZSWIM9Q86XI8 627 aa14.95□□□□□ -0.02
USP28-204ENST00000537642 CAMK1DQ8IU85 385 aa14.95□□□□□ -0.02
USP28-204ENST00000537642 SLC22A18ASQ8N1D0 253 aa14.95□□□□□ -0.02
USP28-204ENST00000537642 PNPLA1Q8N8W4 532 aa14.95□□□□□ -0.02
USP28-204ENST00000537642 SLC35G2Q8TBE7 412 aa14.95□□□□□ -0.02
USP28-204ENST00000537642 HCAR2Q8TDS4 363 aa14.95□□□□□ -0.02
USP28-204ENST00000537642 ASB12Q8WXK4 309 aa14.95□□□□□ -0.02
USP28-204ENST00000537642 NSMCE3Q96MG7 304 aa14.95□□□□□ -0.02
USP28-204ENST00000537642 ZNF641Q96N77 438 aaPredicted RBP14.95□□□□□ -0.02
USP28-204ENST00000537642 ZNF599Q96NL3 588 aa14.95□□□□□ -0.02
USP28-204ENST00000537642 LENG8Q96PV6 779 aaPredicted RBP14.95□□□□□ -0.02
USP28-204ENST00000537642 TUBGCP5Q96RT8 1024 aa14.95□□□□□ -0.02
USP28-204ENST00000537642 KLF6Q99612 283 aaPredicted RBP14.95□□□□□ -0.02
USP28-204ENST00000537642 SCNM1Q9BWG6 230 aa14.95□□□□□ -0.02
USP28-204ENST00000537642 KLHL11Q9NVR0 708 aa14.95□□□□□ -0.02
USP28-204ENST00000537642 TOR4AQ9NXH8 423 aa14.95□□□□□ -0.02
USP28-204ENST00000537642 SEPT3Q9UH03 358 aa14.95□□□□□ -0.02
USP28-204ENST00000537642 A6NNZ2 444 aa14.94□□□□□ -0.02
USP28-204ENST00000537642 TMEM110-MUSTN1A8MSY1 372 aa14.94□□□□□ -0.02
USP28-204ENST00000537642 MMP20O60882 483 aa14.94□□□□□ -0.02
USP28-204ENST00000537642 TRIM16O95361 564 aa14.94□□□□□ -0.02
USP28-204ENST00000537642 ATXN1LP0C7T5 689 aaKnown RBP14.94□□□□□ -0.02
USP28-204ENST00000537642 MAN1A1P33908 653 aa14.94□□□□□ -0.02
USP28-204ENST00000537642 SERPINB6P35237 376 aa14.94□□□□□ -0.02
USP28-204ENST00000537642 NSUN2Q08J23 767 aaKnown RBP eCLIP14.94□□□□□ -0.02
USP28-204ENST00000537642 SGCGQ13326 291 aa14.94□□□□□ -0.02
USP28-204ENST00000537642 INAVAQ3KP66 663 aa14.94□□□□□ -0.02
USP28-204ENST00000537642 KYAT3Q6YP21 454 aaKnown RBP14.94□□□□□ -0.02
USP28-204ENST00000537642 Q6ZSR6 202 aa14.94□□□□□ -0.02
USP28-204ENST00000537642 PTAR1Q7Z6K3 402 aaPredicted RBP14.94□□□□□ -0.02
USP28-204ENST00000537642 RAB44Q7Z6P3 723 aaPredicted RBP14.94□□□□□ -0.02
USP28-204ENST00000537642 CHCHD4Q8N4Q1 142 aa14.94□□□□□ -0.02
USP28-204ENST00000537642 TC2NQ8N9U0 490 aa14.94□□□□□ -0.02
USP28-204ENST00000537642 FAM174AQ8TBP5 190 aa14.94□□□□□ -0.02
USP28-204ENST00000537642 ADAMTS14Q8WXS8 1223 aa14.94□□□□□ -0.02
USP28-204ENST00000537642 PSKH2Q96QS6 385 aa14.94□□□□□ -0.02
USP28-204ENST00000537642 CALN1Q9BXU9 219 aa14.94□□□□□ -0.02
USP28-204ENST00000537642 RBSNQ9H1K0 784 aa14.94□□□□□ -0.02
USP28-204ENST00000537642 CAAP1Q9H8G2 361 aa14.94□□□□□ -0.02
USP28-204ENST00000537642 GPR27Q9NS67 375 aa14.94□□□□□ -0.02
USP28-204ENST00000537642 LCMT1Q9UIC8 334 aa14.94□□□□□ -0.02
USP28-204ENST00000537642 APOBEC2Q9Y235 224 aaKnown RBP14.94□□□□□ -0.02
USP28-204ENST00000537642 MAP1BP46821 2468 aaKnown RBP14.94□□□□□ -0.02
USP28-204ENST00000537642 CEP295Q9C0D2 2601 aa14.94□□□□□ -0.02
USP28-204ENST00000537642 PTPRBP23467 1997 aa14.93□□□□□ -0.02
USP28-204ENST00000537642 TNFSF14O43557 240 aa14.93□□□□□ -0.02
USP28-204ENST00000537642 MFSD11O43934 449 aa14.93□□□□□ -0.02
USP28-204ENST00000537642 MTA2O94776 668 aa14.93□□□□□ -0.02
USP28-204ENST00000537642 DKK1O94907 266 aa14.93□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms