RNA–Protein interactions for RNA: ENST00000536107.5

YBX3-205, Transcript of Y-box binding protein 3, human

TSL 2

Gene YBX3, Length 438 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
YBX3-205	ENST00000536107	BEST2	Q8NFU1	509 aa		4.17	□□□□□ -1.74
YBX3-205	ENST00000536107	WDR36	Q8NI36	951 aa	Known RBP	4.17	□□□□□ -1.74
YBX3-205	ENST00000536107	HTR3C	Q8WXA8	447 aa		4.17	□□□□□ -1.74
YBX3-205	ENST00000536107	CAVIN3	Q969G5	261 aa		4.17	□□□□□ -1.74
YBX3-205	ENST00000536107	ARRDC3	Q96B67	414 aa		4.17	□□□□□ -1.74
YBX3-205	ENST00000536107	FAM227B	Q96M60	508 aa		4.17	□□□□□ -1.74
YBX3-205	ENST00000536107	C5orf34	Q96MH7	638 aa		4.17	□□□□□ -1.74
YBX3-205	ENST00000536107	PPP1R10	Q96QC0	940 aa	Known RBP	4.17	□□□□□ -1.74
YBX3-205	ENST00000536107	SPZ1	Q9BXG8	430 aa		4.17	□□□□□ -1.74
YBX3-205	ENST00000536107	UNC45A	Q9H3U1	944 aa		4.17	□□□□□ -1.74
YBX3-205	ENST00000536107	TMEM206	Q9H813	350 aa		4.17	□□□□□ -1.74
YBX3-205	ENST00000536107	AASDHPPT	Q9NRN7	309 aa		4.17	□□□□□ -1.74
YBX3-205	ENST00000536107	SLC38A7	Q9NVC3	462 aa		4.17	□□□□□ -1.74
YBX3-205	ENST00000536107	SAE1	Q9UBE0	346 aa	Predicted RBP	4.17	□□□□□ -1.74
YBX3-205	ENST00000536107	ENTPD4	Q9Y227	616 aa		4.17	□□□□□ -1.74
YBX3-205	ENST00000536107	ZBTB32	Q9Y2Y4	487 aa	Predicted RBP	4.17	□□□□□ -1.74
YBX3-205	ENST00000536107	IGLV3-22	A0A075B6J6	115 aa		4.16	□□□□□ -1.74
YBX3-205	ENST00000536107	SMIM28	A0A1B0GU29	152 aa		4.16	□□□□□ -1.74
YBX3-205	ENST00000536107	SMCO2	A6NFE2	343 aa		4.16	□□□□□ -1.74
YBX3-205	ENST00000536107	FAM47DP	A6NHR8	397 aa		4.16	□□□□□ -1.74
YBX3-205	ENST00000536107	LRRIQ4	A6NIV6	560 aa		4.16	□□□□□ -1.74
YBX3-205	ENST00000536107	EFCAB7	A8K855	629 aa		4.16	□□□□□ -1.74
YBX3-205	ENST00000536107	CDRT15L2	A8MXV6	281 aa		4.16	□□□□□ -1.74
YBX3-205	ENST00000536107	AHRR	A9YTQ3	701 aa		4.16	□□□□□ -1.74
YBX3-205	ENST00000536107	VILL	O15195	856 aa		4.16	□□□□□ -1.74
YBX3-205	ENST00000536107	KCNAB3	O43448	404 aa		4.16	□□□□□ -1.74
YBX3-205	ENST00000536107	SDC3	O75056	442 aa		4.16	□□□□□ -1.74
YBX3-205	ENST00000536107	LARGE1	O95461	756 aa		4.16	□□□□□ -1.74
YBX3-205	ENST00000536107	ITGA2B	P08514	1039 aa		4.16	□□□□□ -1.74
YBX3-205	ENST00000536107	VSIG10L2	P0DP72	767 aa		4.16	□□□□□ -1.74
YBX3-205	ENST00000536107	HKR1	P10072	659 aa		4.16	□□□□□ -1.74
YBX3-205	ENST00000536107	LIPC	P11150	499 aa		4.16	□□□□□ -1.74
YBX3-205	ENST00000536107	CD99	P14209	185 aa		4.16	□□□□□ -1.74
YBX3-205	ENST00000536107	ATF6	P18850	670 aa		4.16	□□□□□ -1.74
YBX3-205	ENST00000536107	SLC6A4	P31645	630 aa		4.16	□□□□□ -1.74
YBX3-205	ENST00000536107	RPL9	P32969	192 aa	Known RBP	4.16	□□□□□ -1.74
YBX3-205	ENST00000536107	QARS	P47897	775 aa	Known RBP	4.16	□□□□□ -1.74
YBX3-205	ENST00000536107	MFAP1	P55081	439 aa	Known RBP	4.16	□□□□□ -1.74
YBX3-205	ENST00000536107	PSMC5	P62195	406 aa		4.16	□□□□□ -1.74
YBX3-205	ENST00000536107	GAD2	Q05329	585 aa		4.16	□□□□□ -1.74
YBX3-205	ENST00000536107	PRPF4B	Q13523	1007 aa	Known RBP	4.16	□□□□□ -1.74
YBX3-205	ENST00000536107	MYBPC2	Q14324	1141 aa		4.16	□□□□□ -1.74
YBX3-205	ENST00000536107	EMC2	Q15006	297 aa		4.16	□□□□□ -1.74
YBX3-205	ENST00000536107	SHB	Q15464	509 aa		4.16	□□□□□ -1.74
YBX3-205	ENST00000536107	FXN	Q16595	210 aa		4.16	□□□□□ -1.74
YBX3-205	ENST00000536107	FUT11	Q495W5	492 aa		4.16	□□□□□ -1.74
YBX3-205	ENST00000536107	SLC39A12	Q504Y0	691 aa		4.16	□□□□□ -1.74
YBX3-205	ENST00000536107	XKR9	Q5GH70	373 aa		4.16	□□□□□ -1.74
YBX3-205	ENST00000536107	DSTYK	Q6XUX3	929 aa		4.16	□□□□□ -1.74
YBX3-205	ENST00000536107	OTUD6A	Q7L8S5	288 aa		4.16	□□□□□ -1.74
YBX3-205	ENST00000536107	GDF7	Q7Z4P5	450 aa		4.16	□□□□□ -1.74
YBX3-205	ENST00000536107	APBB1IP	Q7Z5R6	666 aa	Predicted RBP	4.16	□□□□□ -1.74
YBX3-205	ENST00000536107	CLEC14A	Q86T13	490 aa		4.16	□□□□□ -1.74
YBX3-205	ENST00000536107	TMEM150A	Q86TG1	271 aa		4.16	□□□□□ -1.74
YBX3-205	ENST00000536107	NT5DC4	Q86YG4	428 aa		4.16	□□□□□ -1.74
YBX3-205	ENST00000536107	FSIP1	Q8NA03	581 aa		4.16	□□□□□ -1.74
YBX3-205	ENST00000536107	GLIS1	Q8NBF1	620 aa		4.16	□□□□□ -1.74
YBX3-205	ENST00000536107	ASB15	Q8WXK1	588 aa		4.16	□□□□□ -1.74
YBX3-205	ENST00000536107	FBXW5	Q969U6	566 aa		4.16	□□□□□ -1.74
YBX3-205	ENST00000536107	ARL8A	Q96BM9	186 aa		4.16	□□□□□ -1.74
YBX3-205	ENST00000536107	GRAMD1A	Q96CP6	724 aa		4.16	□□□□□ -1.74
YBX3-205	ENST00000536107	SLC22A12	Q96S37	553 aa		4.16	□□□□□ -1.74
YBX3-205	ENST00000536107	SLK	Q9H2G2	1235 aa	Predicted RBP	4.16	□□□□□ -1.74
YBX3-205	ENST00000536107	SYNDIG1	Q9H7V2	258 aa		4.16	□□□□□ -1.74
YBX3-205	ENST00000536107	RIC8A	Q9NPQ8	531 aa		4.16	□□□□□ -1.74
YBX3-205	ENST00000536107	PRDM8	Q9NQV8	689 aa		4.16	□□□□□ -1.74
YBX3-205	ENST00000536107	CATSPERZ	Q9NTU4	200 aa		4.16	□□□□□ -1.74
YBX3-205	ENST00000536107	PRMT7	Q9NVM4	692 aa	Predicted RBP	4.16	□□□□□ -1.74
YBX3-205	ENST00000536107	USP36	Q9P275	1121 aa	Known RBP	4.16	□□□□□ -1.74
YBX3-205	ENST00000536107	SEL1L	Q9UBV2	794 aa		4.16	□□□□□ -1.74
YBX3-205	ENST00000536107	SFMBT1	Q9UHJ3	866 aa		4.16	□□□□□ -1.74
YBX3-205	ENST00000536107	EPB41L3	Q9Y2J2	1087 aa	Predicted RBP	4.16	□□□□□ -1.74
YBX3-205	ENST00000536107	ASB1	Q9Y576	335 aa		4.16	□□□□□ -1.74
YBX3-205	ENST00000536107	STK36	Q9NRP7	1315 aa		4.16	□□□□□ -1.74
YBX3-205	ENST00000536107	CCDC187	A0A096LP49	1063 aa		4.15	□□□□□ -1.75
YBX3-205	ENST00000536107		A0A0D9SFI3	127 aa		4.15	□□□□□ -1.75
YBX3-205	ENST00000536107		A0A1B0GVM2	712 aa		4.15	□□□□□ -1.75
YBX3-205	ENST00000536107		A0A1W2PNU3	283 aa	Predicted RBP	4.15	□□□□□ -1.75
YBX3-205	ENST00000536107	WASH3P	C4AMC7	463 aa		4.15	□□□□□ -1.75
YBX3-205	ENST00000536107	ZNF561-AS1	K7EIQ3	104 aa		4.15	□□□□□ -1.75
YBX3-205	ENST00000536107	LEFTY2	O00292	366 aa		4.15	□□□□□ -1.75
YBX3-205	ENST00000536107	TRIM38	O00635	465 aa		4.15	□□□□□ -1.75
YBX3-205	ENST00000536107	FFAR2	O15552	330 aa		4.15	□□□□□ -1.75
YBX3-205	ENST00000536107	DKC1	O60832	514 aa	Known RBP eCLIP	4.15	□□□□□ -1.75
YBX3-205	ENST00000536107	TULP3	O75386	442 aa		4.15	□□□□□ -1.75
YBX3-205	ENST00000536107	OAZ2	O95190	189 aa		4.15	□□□□□ -1.75
YBX3-205	ENST00000536107	STBD1	O95210	358 aa		4.15	□□□□□ -1.75
YBX3-205	ENST00000536107	PLEKHA8P1	O95397	391 aa		4.15	□□□□□ -1.75
YBX3-205	ENST00000536107	SEMA4F	O95754	770 aa		4.15	□□□□□ -1.75
YBX3-205	ENST00000536107	LDLR	P01130	860 aa		4.15	□□□□□ -1.75
YBX3-205	ENST00000536107	CSH1	P0DML2	217 aa		4.15	□□□□□ -1.75
YBX3-205	ENST00000536107	CSH2	P0DML3	217 aa		4.15	□□□□□ -1.75
YBX3-205	ENST00000536107	WT1	P19544	449 aa	Predicted RBP	4.15	□□□□□ -1.75
YBX3-205	ENST00000536107	ACSL1	P33121	698 aa		4.15	□□□□□ -1.75
YBX3-205	ENST00000536107	PDE6C	P51160	858 aa		4.15	□□□□□ -1.75
YBX3-205	ENST00000536107	ZNF81	P51508	661 aa		4.15	□□□□□ -1.75
YBX3-205	ENST00000536107	JAM2	P57087	298 aa		4.15	□□□□□ -1.75
YBX3-205	ENST00000536107	OSTN	P61366	133 aa		4.15	□□□□□ -1.75
YBX3-205	ENST00000536107	SPIDR	Q14159	915 aa		4.15	□□□□□ -1.75
YBX3-205	ENST00000536107	SLC45A4	Q5BKX6	768 aa		4.15	□□□□□ -1.75

Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms