RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 RTP4Q96DX8 246 aa7.54□□□□□ -1.2
CD44-228ENST00000528455 ALG14Q96F25 216 aa7.54□□□□□ -1.2
CD44-228ENST00000528455 KXD1Q9BQD3 176 aa7.54□□□□□ -1.2
CD44-228ENST00000528455 MFSD1Q9H3U5 465 aa7.54□□□□□ -1.2
CD44-228ENST00000528455 EBF3Q9H4W6 596 aa7.54□□□□□ -1.2
CD44-228ENST00000528455 SOX17Q9H6I2 414 aaPredicted RBP7.54□□□□□ -1.2
CD44-228ENST00000528455 BRD9Q9H8M2 597 aa7.54□□□□□ -1.2
CD44-228ENST00000528455 ZFYVE1Q9HBF4 777 aa7.54□□□□□ -1.2
CD44-228ENST00000528455 HPS4Q9NQG7 708 aa7.54□□□□□ -1.2
CD44-228ENST00000528455 RBM12Q9NTZ6 932 aaKnown RBP7.54□□□□□ -1.2
CD44-228ENST00000528455 KCNK4Q9NYG8 393 aa7.54□□□□□ -1.2
CD44-228ENST00000528455 SMARCAL1Q9NZC9 954 aa7.54□□□□□ -1.2
CD44-228ENST00000528455 AMACRQ9UHK6 382 aa7.54□□□□□ -1.2
CD44-228ENST00000528455 IPO11Q9UI26 975 aaKnown RBP7.54□□□□□ -1.2
CD44-228ENST00000528455 FBXL21Q9UKT6 434 aa7.54□□□□□ -1.2
CD44-228ENST00000528455 TRHDEQ9UKU6 1024 aa7.54□□□□□ -1.2
CD44-228ENST00000528455 DUSP12Q9UNI6 340 aa7.54□□□□□ -1.2
CD44-228ENST00000528455 R3HDM2Q9Y2K5 976 aaKnown RBP7.54□□□□□ -1.2
CD44-228ENST00000528455 NUMBLQ9Y6R0 609 aa7.54□□□□□ -1.2
CD44-228ENST00000528455 SHROOM3Q8TF72 1996 aa7.53□□□□□ -1.2
CD44-228ENST00000528455 A0A0D9SEW6 157 aa7.53□□□□□ -1.2
CD44-228ENST00000528455 KRBA1A5PL33 1030 aa7.53□□□□□ -1.2
CD44-228ENST00000528455 PALM2-AKAP2B1ALY0 433 aaPredicted RBP7.53□□□□□ -1.2
CD44-228ENST00000528455 NEDD8-MDP1E9PL57 170 aa7.53□□□□□ -1.2
CD44-228ENST00000528455 ARNTLO00327 626 aa7.53□□□□□ -1.2
CD44-228ENST00000528455 SCAMP3O14828 347 aaKnown RBP7.53□□□□□ -1.2
CD44-228ENST00000528455 PRAMEF11O60813 436 aa7.53□□□□□ -1.2
CD44-228ENST00000528455 ZMPSTE24O75844 475 aa7.53□□□□□ -1.2
CD44-228ENST00000528455 STK10O94804 968 aaKnown RBP7.53□□□□□ -1.2
CD44-228ENST00000528455 PDGFBP01127 241 aaPredicted RBP7.53□□□□□ -1.2
CD44-228ENST00000528455 RHOCP08134 193 aa7.53□□□□□ -1.2
CD44-228ENST00000528455 CCNB1P14635 433 aa7.53□□□□□ -1.2
CD44-228ENST00000528455 CD68P34810 354 aaPredicted RBP7.53□□□□□ -1.2
CD44-228ENST00000528455 GJA4P35212 333 aa7.53□□□□□ -1.2
CD44-228ENST00000528455 KCNJ1P48048 391 aa7.53□□□□□ -1.2
CD44-228ENST00000528455 GEMIN4P57678 1058 aaKnown RBP7.53□□□□□ -1.2
CD44-228ENST00000528455 PFKPQ01813 784 aa7.53□□□□□ -1.2
CD44-228ENST00000528455 TNK2Q07912 1038 aa7.53□□□□□ -1.2
CD44-228ENST00000528455 NSUN2Q08J23 767 aaKnown RBP eCLIP7.53□□□□□ -1.2
CD44-228ENST00000528455 SNX1Q13596 522 aa7.53□□□□□ -1.2
CD44-228ENST00000528455 CDH18Q13634 790 aa7.53□□□□□ -1.2
CD44-228ENST00000528455 RFTN1Q14699 578 aaPredicted RBP7.53□□□□□ -1.2
CD44-228ENST00000528455 PRKD1Q15139 912 aaPredicted RBP7.53□□□□□ -1.2
CD44-228ENST00000528455 TEX44Q53QW1 395 aa7.53□□□□□ -1.2
CD44-228ENST00000528455 HEATR6Q6AI08 1181 aaKnown RBP7.53□□□□□ -1.2
CD44-228ENST00000528455 TRIM68Q6AZZ1 485 aa7.53□□□□□ -1.2
CD44-228ENST00000528455 CCDC70Q6NSX1 233 aa7.53□□□□□ -1.2
CD44-228ENST00000528455 SHISA2Q6UWI4 295 aa7.53□□□□□ -1.2
CD44-228ENST00000528455 TFAP2DQ7Z6R9 452 aa7.53□□□□□ -1.2
CD44-228ENST00000528455 CDKL3Q8IVW4 592 aaPredicted RBP7.53□□□□□ -1.2
CD44-228ENST00000528455 CCDC13Q8IYE1 715 aa7.53□□□□□ -1.2
CD44-228ENST00000528455 TEX26Q8N6G2 289 aa7.53□□□□□ -1.2
CD44-228ENST00000528455 ALLCQ8N6M5 410 aa7.53□□□□□ -1.2
CD44-228ENST00000528455 NPWQ8N729 165 aa7.53□□□□□ -1.2
CD44-228ENST00000528455 DDX51Q8N8A6 666 aaKnown RBP eCLIP7.53□□□□□ -1.2
CD44-228ENST00000528455 CCDC89Q8N998 374 aa7.53□□□□□ -1.2
CD44-228ENST00000528455 OR52K2Q8NGK3 314 aa7.53□□□□□ -1.2
CD44-228ENST00000528455 CCHCR1Q8TD31 782 aa7.53□□□□□ -1.2
CD44-228ENST00000528455 CSGALNACT1Q8TDX6 532 aa7.53□□□□□ -1.2
CD44-228ENST00000528455 NSMCE1Q8WV22 266 aa7.53□□□□□ -1.2
CD44-228ENST00000528455 HTR3CQ8WXA8 447 aa7.53□□□□□ -1.2
CD44-228ENST00000528455 CASKIN2Q8WXE0 1202 aa7.53□□□□□ -1.2
CD44-228ENST00000528455 ATG4AQ8WYN0 398 aa7.53□□□□□ -1.2
CD44-228ENST00000528455 MAML1Q92585 1016 aa7.53□□□□□ -1.2
CD44-228ENST00000528455 DNASE1L2Q92874 299 aa7.53□□□□□ -1.2
CD44-228ENST00000528455 TTC17Q96AE7 1141 aa7.53□□□□□ -1.2
CD44-228ENST00000528455 HMCESQ96FZ2 354 aa7.53□□□□□ -1.2
CD44-228ENST00000528455 P2RY11Q96G91 374 aa7.53□□□□□ -1.2
CD44-228ENST00000528455 ZFYVE19Q96K21 471 aa7.53□□□□□ -1.2
CD44-228ENST00000528455 KRT12Q99456 494 aa7.53□□□□□ -1.2
CD44-228ENST00000528455 LGMNQ99538 433 aa7.53□□□□□ -1.2
CD44-228ENST00000528455 IL12RB2Q99665 862 aa7.53□□□□□ -1.2
CD44-228ENST00000528455 SPON2Q9BUD6 331 aa7.53□□□□□ -1.2
CD44-228ENST00000528455 DDX47Q9H0S4 455 aaKnown RBP7.53□□□□□ -1.2
CD44-228ENST00000528455 IRF2BPLQ9H1B7 796 aa7.53□□□□□ -1.2
CD44-228ENST00000528455 C8orf33Q9H7E9 229 aaPredicted RBP7.53□□□□□ -1.2
CD44-228ENST00000528455 ABCB8Q9NUT2 735 aa7.53□□□□□ -1.2
CD44-228ENST00000528455 HAUS2Q9NVX0 235 aa7.53□□□□□ -1.2
CD44-228ENST00000528455 PLK2Q9NYY3 685 aa7.53□□□□□ -1.2
CD44-228ENST00000528455 DEC1Q9P2X7 70 aa7.53□□□□□ -1.2
CD44-228ENST00000528455 WNT16Q9UBV4 365 aa7.53□□□□□ -1.2
CD44-228ENST00000528455 PPM1HQ9ULR3 514 aa7.53□□□□□ -1.2
CD44-228ENST00000528455 CLEC4EQ9ULY5 219 aa7.53□□□□□ -1.2
CD44-228ENST00000528455 NEU2Q9Y3R4 380 aa7.53□□□□□ -1.2
CD44-228ENST00000528455 MFHAS1Q9Y4C4 1052 aa7.53□□□□□ -1.2
CD44-228ENST00000528455 MYO18AQ92614 2054 aaKnown RBP7.52□□□□□ -1.21
CD44-228ENST00000528455 OTOL1A6NHN0 477 aaPredicted RBP7.52□□□□□ -1.21
CD44-228ENST00000528455 DFFAO00273 331 aa7.52□□□□□ -1.21
CD44-228ENST00000528455 KCNN4O15554 427 aa7.52□□□□□ -1.21
CD44-228ENST00000528455 MFSD11O43934 449 aa7.52□□□□□ -1.21
CD44-228ENST00000528455 ADAM11O75078 769 aa7.52□□□□□ -1.21
CD44-228ENST00000528455 TULP3O75386 442 aa7.52□□□□□ -1.21
CD44-228ENST00000528455 GAS8O95995 478 aa7.52□□□□□ -1.21
CD44-228ENST00000528455 PEX11BO96011 259 aa7.52□□□□□ -1.21
CD44-228ENST00000528455 ATP5BP06576 529 aaKnown RBP7.52□□□□□ -1.21
CD44-228ENST00000528455 TUBBP07437 444 aa7.52□□□□□ -1.21
CD44-228ENST00000528455 SRFP11831 508 aa7.52□□□□□ -1.21
CD44-228ENST00000528455 ARSAP15289 507 aa7.52□□□□□ -1.21
CD44-228ENST00000528455 RBL1P28749 1068 aa7.52□□□□□ -1.21
CD44-228ENST00000528455 HLA-FP30511 346 aa7.52□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms