RNA–Protein interactions for RNA: ENST00000525688.5

CD44-220, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 560 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-220ENST00000525688 ODF2Q5BJF6 829 aa5□□□□□ -1.61
CD44-220ENST00000525688 LRCH2Q5VUJ6 765 aa5□□□□□ -1.61
CD44-220ENST00000525688 GPR139Q6DWJ6 353 aa5□□□□□ -1.61
CD44-220ENST00000525688 IRGCQ6NXR0 463 aa5□□□□□ -1.61
CD44-220ENST00000525688 MTFR2Q6P444 385 aa5□□□□□ -1.61
CD44-220ENST00000525688 ALKBH5Q6P6C2 394 aaKnown RBP5□□□□□ -1.61
CD44-220ENST00000525688 CRIP3Q6Q6R5 217 aa5□□□□□ -1.61
CD44-220ENST00000525688 CCBE1Q6UXH8 406 aaPredicted RBP5□□□□□ -1.61
CD44-220ENST00000525688 B4GALNT4Q76KP1 1039 aa5□□□□□ -1.61
CD44-220ENST00000525688 ZNF627Q7L945 461 aa5□□□□□ -1.61
CD44-220ENST00000525688 RFX6Q8HWS3 928 aa5□□□□□ -1.61
CD44-220ENST00000525688 OR8H3Q8N146 312 aa5□□□□□ -1.61
CD44-220ENST00000525688 RFWD2Q8NHY2 731 aa5□□□□□ -1.61
CD44-220ENST00000525688 CAGE1Q8TC20 777 aa5□□□□□ -1.61
CD44-220ENST00000525688 CREB3L4Q8TEY5 395 aa5□□□□□ -1.61
CD44-220ENST00000525688 ZNF606Q8WXB4 792 aa5□□□□□ -1.61
CD44-220ENST00000525688 TAF4BQ92750 862 aa5□□□□□ -1.61
CD44-220ENST00000525688 KCNJ9Q92806 393 aa5□□□□□ -1.61
CD44-220ENST00000525688 ELP4Q96EB1 424 aa5□□□□□ -1.61
CD44-220ENST00000525688 UROC1Q96N76 676 aa5□□□□□ -1.61
CD44-220ENST00000525688 CTDSP1Q9GZU7 261 aa5□□□□□ -1.61
CD44-220ENST00000525688 INTS2Q9H0H0 1204 aaKnown RBP5□□□□□ -1.61
CD44-220ENST00000525688 OR10A4Q9H209 315 aa5□□□□□ -1.61
CD44-220ENST00000525688 CCDC177Q9NQR7 707 aaPredicted RBP5□□□□□ -1.61
CD44-220ENST00000525688 KRT84Q9NSB2 600 aa5□□□□□ -1.61
CD44-220ENST00000525688 CPSF2Q9P2I0 782 aaKnown RBP5□□□□□ -1.61
CD44-220ENST00000525688 SLC17A6Q9P2U8 582 aa5□□□□□ -1.61
CD44-220ENST00000525688 PACSIN3Q9UKS6 424 aa5□□□□□ -1.61
CD44-220ENST00000525688 COG5Q9UP83 839 aa5□□□□□ -1.61
CD44-220ENST00000525688 CNPY2Q9Y2B0 182 aa5□□□□□ -1.61
CD44-220ENST00000525688 MYRFQ9Y2G1 1151 aa5□□□□□ -1.61
CD44-220ENST00000525688 PKP3Q9Y446 797 aa5□□□□□ -1.61
CD44-220ENST00000525688 TECPR2O15040 1411 aa4.99□□□□□ -1.61
CD44-220ENST00000525688 ASXL1Q8IXJ9 1541 aa4.99□□□□□ -1.61
CD44-220ENST00000525688 SYNJ2BP-COX16A0A087WUM0 186 aa4.99□□□□□ -1.61
CD44-220ENST00000525688 FAM25EA8MYX2 175 aa4.99□□□□□ -1.61
CD44-220ENST00000525688 NDC80O14777 642 aa4.99□□□□□ -1.61
CD44-220ENST00000525688 MGST3O14880 152 aa4.99□□□□□ -1.61
CD44-220ENST00000525688 KIF5CO60282 957 aa4.99□□□□□ -1.61
CD44-220ENST00000525688 CCNT1O60563 726 aaKnown RBP4.99□□□□□ -1.61
CD44-220ENST00000525688 CHMP24386 653 aa4.99□□□□□ -1.61
CD44-220ENST00000525688 HNF1BP35680 557 aa4.99□□□□□ -1.61
CD44-220ENST00000525688 GJC1P36383 396 aa4.99□□□□□ -1.61
CD44-220ENST00000525688 PAFAH1B1P43034 410 aa4.99□□□□□ -1.61
CD44-220ENST00000525688 MSH2P43246 934 aa4.99□□□□□ -1.61
CD44-220ENST00000525688 VPS41P49754 854 aa4.99□□□□□ -1.61
CD44-220ENST00000525688 ALDH3A2P51648 485 aa4.99□□□□□ -1.61
CD44-220ENST00000525688 CCR9P51686 369 aa4.99□□□□□ -1.61
CD44-220ENST00000525688 OAZ1P54368 228 aa4.99□□□□□ -1.61
CD44-220ENST00000525688 ARHGAP8P85298 464 aa4.99□□□□□ -1.61
CD44-220ENST00000525688 ABHD18Q0P651 414 aa4.99□□□□□ -1.61
CD44-220ENST00000525688 COX10Q12887 443 aa4.99□□□□□ -1.61
CD44-220ENST00000525688 SLC14A1Q13336 389 aa4.99□□□□□ -1.61
CD44-220ENST00000525688 PUM1Q14671 1186 aaKnown RBP eCLIP4.99□□□□□ -1.61
CD44-220ENST00000525688 SEC23BQ15437 767 aa4.99□□□□□ -1.61
CD44-220ENST00000525688 TSTQ16762 297 aaKnown RBP4.99□□□□□ -1.61
CD44-220ENST00000525688 GXYLT1Q4G148 440 aa4.99□□□□□ -1.61
CD44-220ENST00000525688 ZNF766Q5HY98 468 aa4.99□□□□□ -1.61
CD44-220ENST00000525688 TSTD2Q5T7W7 516 aa4.99□□□□□ -1.61
CD44-220ENST00000525688 GJB7Q6PEY0 223 aa4.99□□□□□ -1.61
CD44-220ENST00000525688 ZNF474Q6S9Z5 364 aaPredicted RBP4.99□□□□□ -1.61
CD44-220ENST00000525688 R3HCC1LQ7Z5L2 792 aaKnown RBP4.99□□□□□ -1.61
CD44-220ENST00000525688 TMEM200AQ86VY9 491 aa4.99□□□□□ -1.61
CD44-220ENST00000525688 UNC45BQ8IWX7 931 aa4.99□□□□□ -1.61
CD44-220ENST00000525688 NUP93Q8N1F7 819 aa4.99□□□□□ -1.61
CD44-220ENST00000525688 NFKBIDQ8NI38 313 aa4.99□□□□□ -1.61
CD44-220ENST00000525688 NCSTNQ92542 709 aa4.99□□□□□ -1.61
CD44-220ENST00000525688 CELF1Q92879 486 aaKnown RBP4.99□□□□□ -1.61
CD44-220ENST00000525688 CLSTN3Q9BQT9 956 aa4.99□□□□□ -1.61
CD44-220ENST00000525688 NPLQ9BXD5 320 aaPredicted RBP4.99□□□□□ -1.61
CD44-220ENST00000525688 TRIM31Q9BZY9 425 aa4.99□□□□□ -1.61
CD44-220ENST00000525688 TRIM2Q9C040 744 aa4.99□□□□□ -1.61
CD44-220ENST00000525688 NUAK2Q9H093 628 aa4.99□□□□□ -1.61
CD44-220ENST00000525688 MROH8Q9H579 483 aa4.99□□□□□ -1.61
CD44-220ENST00000525688 ERVK-5Q9HDB9 667 aa4.99□□□□□ -1.61
CD44-220ENST00000525688 TXNRD2Q9NNW7 524 aa4.99□□□□□ -1.61
CD44-220ENST00000525688 ALKBH4Q9NXW9 302 aa4.99□□□□□ -1.61
CD44-220ENST00000525688 ADD3Q9UEY8 706 aaKnown RBP4.99□□□□□ -1.61
CD44-220ENST00000525688 RASAL2Q9UJF2 1139 aa4.99□□□□□ -1.61
CD44-220ENST00000525688 ADAM21Q9UKJ8 722 aa4.99□□□□□ -1.61
CD44-220ENST00000525688 NAALADL1Q9UQQ1 740 aa4.99□□□□□ -1.61
CD44-220ENST00000525688 OSGIN2Q9Y236 505 aa4.99□□□□□ -1.61
CD44-220ENST00000525688 DTX4Q9Y2E6 619 aa4.99□□□□□ -1.61
CD44-220ENST00000525688 HEMK1Q9Y5R4 338 aaPredicted RBP4.99□□□□□ -1.61
CD44-220ENST00000525688 LRPPRCP42704 1394 aaKnown RBP4.99□□□□□ -1.61
CD44-220ENST00000525688 MSH6P52701 1360 aa4.99□□□□□ -1.61
CD44-220ENST00000525688 ABCC11Q96J66 1382 aa4.99□□□□□ -1.61
CD44-220ENST00000525688 DCCP43146 1447 aa4.98□□□□□ -1.61
CD44-220ENST00000525688 FAM135BQ49AJ0 1406 aa4.98□□□□□ -1.61
CD44-220ENST00000525688 LAMC1P11047 1609 aa4.98□□□□□ -1.61
CD44-220ENST00000525688 CCDC69A6NI79 296 aa4.98□□□□□ -1.61
CD44-220ENST00000525688 TARM1B6A8C7 271 aa4.98□□□□□ -1.61
CD44-220ENST00000525688 TEX22C9J3V5 150 aa4.98□□□□□ -1.61
CD44-220ENST00000525688 POC1B-GALNT4F8VUJ3 575 aa4.98□□□□□ -1.61
CD44-220ENST00000525688 BOLA2-SMG1P6H3BVE0 249 aa4.98□□□□□ -1.61
CD44-220ENST00000525688 TNPO2O14787 897 aaKnown RBP4.98□□□□□ -1.61
CD44-220ENST00000525688 TSPAN4O14817 238 aa4.98□□□□□ -1.61
CD44-220ENST00000525688 FOXN1O15353 648 aa4.98□□□□□ -1.61
CD44-220ENST00000525688 IPO8O15397 1037 aaKnown RBP4.98□□□□□ -1.61
CD44-220ENST00000525688 GCATO75600 419 aa4.98□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms