RNA–Protein interactions for RNA: ENST00000525348.1

CD44-217, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 568 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-217ENST00000525348 EBAG9O00559 213 aa4.16□□□□□ -1.74
CD44-217ENST00000525348 SRD5A1P18405 259 aa4.16□□□□□ -1.74
CD44-217ENST00000525348 EDN2P20800 178 aa4.16□□□□□ -1.74
CD44-217ENST00000525348 RYKP34925 604 aa4.16□□□□□ -1.74
CD44-217ENST00000525348 COMPP49747 757 aaPredicted RBP4.16□□□□□ -1.74
CD44-217ENST00000525348 RRP1P56182 461 aaKnown RBP4.16□□□□□ -1.74
CD44-217ENST00000525348 SETQ01105 290 aaPredicted RBP4.16□□□□□ -1.74
CD44-217ENST00000525348 COASYQ13057 564 aa4.16□□□□□ -1.74
CD44-217ENST00000525348 NAA25Q14CX7 972 aa4.16□□□□□ -1.74
CD44-217ENST00000525348 SETMARQ53H47 684 aaPredicted RBP4.16□□□□□ -1.74
CD44-217ENST00000525348 ZNF667Q5HYK9 610 aa4.16□□□□□ -1.74
CD44-217ENST00000525348 MAP3K21Q5TCX8 1036 aa4.16□□□□□ -1.74
CD44-217ENST00000525348 IL20RBQ6UXL0 311 aa4.16□□□□□ -1.74
CD44-217ENST00000525348 BBS12Q6ZW61 710 aa4.16□□□□□ -1.74
CD44-217ENST00000525348 USP38Q8NB14 1042 aa4.16□□□□□ -1.74
CD44-217ENST00000525348 ZMIZ2Q8NF64 920 aa4.16□□□□□ -1.74
CD44-217ENST00000525348 HERVK_113Q902F9 699 aa4.16□□□□□ -1.74
CD44-217ENST00000525348 HERPUD2Q9BSE4 406 aa4.16□□□□□ -1.74
CD44-217ENST00000525348 TAOK3Q9H2K8 898 aa4.16□□□□□ -1.74
CD44-217ENST00000525348 SPATS2LQ9NUQ6 558 aaKnown RBP4.16□□□□□ -1.74
CD44-217ENST00000525348 ANKRD10Q9NXR5 420 aa4.16□□□□□ -1.74
CD44-217ENST00000525348 C17orf113A0A1B0GUU1 675 aa4.15□□□□□ -1.75
CD44-217ENST00000525348 HSPB2A8KAH6 182 aa4.15□□□□□ -1.75
CD44-217ENST00000525348 SMTNL1A8MU46 457 aa4.15□□□□□ -1.75
CD44-217ENST00000525348 BTBD18B2RXH4 712 aa4.15□□□□□ -1.75
CD44-217ENST00000525348 SERPINI2O75830 405 aa4.15□□□□□ -1.75
CD44-217ENST00000525348 LIFRP42702 1097 aa4.15□□□□□ -1.75
CD44-217ENST00000525348 TUBA1BP68363 451 aa4.15□□□□□ -1.75
CD44-217ENST00000525348 TRAF2Q12933 501 aa4.15□□□□□ -1.75
CD44-217ENST00000525348 HSPB2Q16082 182 aa4.15□□□□□ -1.75
CD44-217ENST00000525348 HLFQ16534 295 aa4.15□□□□□ -1.75
CD44-217ENST00000525348 WDR45BQ5MNZ6 344 aa4.15□□□□□ -1.75
CD44-217ENST00000525348 TYW3Q6IPR3 259 aaKnown RBP4.15□□□□□ -1.75
CD44-217ENST00000525348 CCDC129Q6ZRS4 1044 aa4.15□□□□□ -1.75
CD44-217ENST00000525348 LURAP1LQ8IV03 231 aa4.15□□□□□ -1.75
CD44-217ENST00000525348 CCDC105Q8IYK2 499 aa4.15□□□□□ -1.75
CD44-217ENST00000525348 CPXM2Q8N436 756 aa4.15□□□□□ -1.75
CD44-217ENST00000525348 AADATQ8N5Z0 425 aa4.15□□□□□ -1.75
CD44-217ENST00000525348 RUFY2Q8WXA3 655 aa4.15□□□□□ -1.75
CD44-217ENST00000525348 TRIB2Q92519 343 aa4.15□□□□□ -1.75
CD44-217ENST00000525348 ELP4Q96EB1 424 aa4.15□□□□□ -1.75
CD44-217ENST00000525348 SLITRK1Q96PX8 696 aa4.15□□□□□ -1.75
CD44-217ENST00000525348 EYA3Q99504 573 aa4.15□□□□□ -1.75
CD44-217ENST00000525348 C1QTNF4Q9BXJ3 329 aa4.15□□□□□ -1.75
CD44-217ENST00000525348 TTYH1Q9H313 450 aaPredicted RBP4.15□□□□□ -1.75
CD44-217ENST00000525348 GAREM1Q9H706 876 aa4.15□□□□□ -1.75
CD44-217ENST00000525348 DDX31Q9H8H2 851 aaKnown RBP4.15□□□□□ -1.75
CD44-217ENST00000525348 ZNF556Q9HAH1 456 aa4.15□□□□□ -1.75
CD44-217ENST00000525348 IFT80Q9P2H3 777 aaPredicted RBP4.15□□□□□ -1.75
CD44-217ENST00000525348 NDRG3Q9UGV2 375 aa4.15□□□□□ -1.75
CD44-217ENST00000525348 NPIPB11E5RHQ5 1161 aa4.14□□□□□ -1.75
CD44-217ENST00000525348 TSPAN3O60637 253 aa4.14□□□□□ -1.75
CD44-217ENST00000525348 ITGAXP20702 1163 aa4.14□□□□□ -1.75
CD44-217ENST00000525348 MYF6P23409 242 aa4.14□□□□□ -1.75
CD44-217ENST00000525348 PIGAP37287 484 aa4.14□□□□□ -1.75
CD44-217ENST00000525348 CLDN2P57739 230 aa4.14□□□□□ -1.75
CD44-217ENST00000525348 ERVFC1-1P60608 527 aa4.14□□□□□ -1.75
CD44-217ENST00000525348 RPL36AP83881 106 aaKnown RBP4.14□□□□□ -1.75
CD44-217ENST00000525348 EEF1A2Q05639 463 aaKnown RBP4.14□□□□□ -1.75
CD44-217ENST00000525348 ST3GAL1Q11201 340 aa4.14□□□□□ -1.75
CD44-217ENST00000525348 PPFIA1Q13136 1202 aa4.14□□□□□ -1.75
CD44-217ENST00000525348 TDGQ13569 410 aa4.14□□□□□ -1.75
CD44-217ENST00000525348 DHX34Q14147 1143 aaKnown RBP4.14□□□□□ -1.75
CD44-217ENST00000525348 FAM69BQ5VUD6 431 aa4.14□□□□□ -1.75
CD44-217ENST00000525348 ATG16L1Q676U5 607 aa4.14□□□□□ -1.75
CD44-217ENST00000525348 RETSATQ6NUM9 610 aa4.14□□□□□ -1.75
CD44-217ENST00000525348 H1FNTQ75WM6 255 aaPredicted RBP4.14□□□□□ -1.75
CD44-217ENST00000525348 SFTPA2Q8IWL1 248 aa4.14□□□□□ -1.75
CD44-217ENST00000525348 PGBD5Q8N414 524 aa4.14□□□□□ -1.75
CD44-217ENST00000525348 TCP11L2Q8N4U5 519 aa4.14□□□□□ -1.75
CD44-217ENST00000525348 ANKRD42Q8N9B4 389 aa4.14□□□□□ -1.75
CD44-217ENST00000525348 ZNF114Q8NC26 417 aa4.14□□□□□ -1.75
CD44-217ENST00000525348 LILRB1Q8NHL6 650 aaPredicted RBP4.14□□□□□ -1.75
CD44-217ENST00000525348 RFWD2Q8NHY2 731 aa4.14□□□□□ -1.75
CD44-217ENST00000525348 SH3KBP1Q96B97 665 aa4.14□□□□□ -1.75
CD44-217ENST00000525348 RTP4Q96DX8 246 aa4.14□□□□□ -1.75
CD44-217ENST00000525348 RIC8AQ9NPQ8 531 aa4.14□□□□□ -1.75
CD44-217ENST00000525348 PLSCR4Q9NRQ2 329 aa4.14□□□□□ -1.75
CD44-217ENST00000525348 OR6C3Q9NZP0 311 aa4.14□□□□□ -1.75
CD44-217ENST00000525348 PRDM4Q9UKN5 801 aa4.14□□□□□ -1.75
CD44-217ENST00000525348 HSF4Q9ULV5 492 aa4.14□□□□□ -1.75
CD44-217ENST00000525348 SUFUQ9UMX1 484 aa4.14□□□□□ -1.75
CD44-217ENST00000525348 BICRAQ9NZM4 1560 aa4.14□□□□□ -1.75
CD44-217ENST00000525348 A0A0U1RQF3 1178 aa4.13□□□□□ -1.75
CD44-217ENST00000525348 A0A0U1RQJ8 604 aa4.13□□□□□ -1.75
CD44-217ENST00000525348 KLRF2D3W0D1 207 aa4.13□□□□□ -1.75
CD44-217ENST00000525348 IFNL4K9M1U5 179 aa4.13□□□□□ -1.75
CD44-217ENST00000525348 EIF3FO00303 357 aaPredicted RBP4.13□□□□□ -1.75
CD44-217ENST00000525348 ATP2C2O75185 946 aa4.13□□□□□ -1.75
CD44-217ENST00000525348 RGS11O94810 467 aa4.13□□□□□ -1.75
CD44-217ENST00000525348 DDNO94850 711 aaPredicted RBP4.13□□□□□ -1.75
CD44-217ENST00000525348 VNN2O95498 520 aa4.13□□□□□ -1.75
CD44-217ENST00000525348 CH25HO95992 272 aa4.13□□□□□ -1.75
CD44-217ENST00000525348 AFPP02771 609 aaKnown RBP4.13□□□□□ -1.75
CD44-217ENST00000525348 TFPIP10646 304 aa4.13□□□□□ -1.75
CD44-217ENST00000525348 SSTR2P30874 369 aa4.13□□□□□ -1.75
CD44-217ENST00000525348 RPL3P39023 403 aaKnown RBP4.13□□□□□ -1.75
CD44-217ENST00000525348 MMP14P50281 582 aa4.13□□□□□ -1.75
CD44-217ENST00000525348 BLKP51451 505 aa4.13□□□□□ -1.75
CD44-217ENST00000525348 EFNA5P52803 228 aa4.13□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms