RNA–Protein interactions for RNA: ENST00000515562.1

DDX41-217, Transcript of DEAD-box helicase 41, humanhuman

TSL 1 (best)

Gene DDX41, Length 1,184 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-217ENST00000515562 IPO11Q9UI26 975 aaKnown RBP17.7■□□□□ 0.42
DDX41-217ENST00000515562 GPSM3Q9Y4H4 160 aa17.7■□□□□ 0.42
DDX41-217ENST00000515562 ARHGAP42A6NI28 874 aa17.69■□□□□ 0.42
DDX41-217ENST00000515562 DDX3XO00571 662 aaKnown RBP eCLIP17.69■□□□□ 0.42
DDX41-217ENST00000515562 TOR1BO14657 336 aa17.69■□□□□ 0.42
DDX41-217ENST00000515562 SCAMP1O15126 338 aa17.69■□□□□ 0.42
DDX41-217ENST00000515562 DAPK3O43293 454 aa17.69■□□□□ 0.42
DDX41-217ENST00000515562 PRAMEF11O60813 436 aa17.69■□□□□ 0.42
DDX41-217ENST00000515562 CKMT1AP12532 417 aa17.69■□□□□ 0.42
DDX41-217ENST00000515562 XPAP23025 273 aaPredicted RBP17.69■□□□□ 0.42
DDX41-217ENST00000515562 PFN3P60673 137 aa17.69■□□□□ 0.42
DDX41-217ENST00000515562 E2F1Q01094 437 aa17.69■□□□□ 0.42
DDX41-217ENST00000515562 ELP6Q0PNE2 266 aa17.69■□□□□ 0.42
DDX41-217ENST00000515562 IQCB1Q15051 598 aa17.69■□□□□ 0.42
DDX41-217ENST00000515562 LRRC73Q5JTD7 316 aa17.69■□□□□ 0.42
DDX41-217ENST00000515562 RFX8Q6ZV50 586 aa17.69■□□□□ 0.42
DDX41-217ENST00000515562 CACTIN-AS1Q8N1I8 211 aa17.69■□□□□ 0.42
DDX41-217ENST00000515562 ZNF548Q8NEK5 533 aaPredicted RBP17.69■□□□□ 0.42
DDX41-217ENST00000515562 HCAR2Q8TDS4 363 aa17.69■□□□□ 0.42
DDX41-217ENST00000515562 EXOC2Q96KP1 924 aa17.69■□□□□ 0.42
DDX41-217ENST00000515562 NAP1L5Q96NT1 182 aaPredicted RBP17.69■□□□□ 0.42
DDX41-217ENST00000515562 PEBP4Q96S96 227 aa17.69■□□□□ 0.42
DDX41-217ENST00000515562 FUCA2Q9BTY2 467 aa17.69■□□□□ 0.42
DDX41-217ENST00000515562 USP29Q9HBJ7 922 aa17.69■□□□□ 0.42
DDX41-217ENST00000515562 MRPL47Q9HD33 250 aaKnown RBP17.69■□□□□ 0.42
DDX41-217ENST00000515562 PCSK1NQ9UHG2 260 aa17.69■□□□□ 0.42
DDX41-217ENST00000515562 LHX6Q9UPM6 363 aa17.69■□□□□ 0.42
DDX41-217ENST00000515562 RAXQ9Y2V3 346 aa17.69■□□□□ 0.42
DDX41-217ENST00000515562 RIOK3O14730 519 aaKnown RBP17.68■□□□□ 0.42
DDX41-217ENST00000515562 TM7SF2O76062 418 aa17.68■□□□□ 0.42
DDX41-217ENST00000515562 GIMD1P0DJR0 217 aa17.68■□□□□ 0.42
DDX41-217ENST00000515562 MIPP30301 263 aa17.68■□□□□ 0.42
DDX41-217ENST00000515562 THOP1P52888 689 aa17.68■□□□□ 0.42
DDX41-217ENST00000515562 CLDN6P56747 220 aa17.68■□□□□ 0.42
DDX41-217ENST00000515562 ACACAQ13085 2346 aa17.68■□□□□ 0.42
DDX41-217ENST00000515562 TARDBPQ13148 414 aaKnown RBP eCLIP17.68■□□□□ 0.42
DDX41-217ENST00000515562 PTK2BQ14289 1009 aa17.68■□□□□ 0.42
DDX41-217ENST00000515562 NR1I3Q14994 352 aa17.68■□□□□ 0.42
DDX41-217ENST00000515562 CYTH1Q15438 398 aa17.68■□□□□ 0.42
DDX41-217ENST00000515562 CA9Q16790 459 aa17.68■□□□□ 0.42
DDX41-217ENST00000515562 ZNF542PQ5EBM4 170 aa17.68■□□□□ 0.42
DDX41-217ENST00000515562 CFAP58Q5T655 872 aa17.68■□□□□ 0.42
DDX41-217ENST00000515562 ARFGAP1Q8N6T3 406 aa17.68■□□□□ 0.42
DDX41-217ENST00000515562 FAM181AQ8N9Y4 354 aa17.68■□□□□ 0.42
DDX41-217ENST00000515562 CENPTQ96BT3 561 aa17.68■□□□□ 0.42
DDX41-217ENST00000515562 CELF6Q96J87 481 aaKnown RBP17.68■□□□□ 0.42
DDX41-217ENST00000515562 ZNF641Q96N77 438 aaPredicted RBP17.68■□□□□ 0.42
DDX41-217ENST00000515562 TUBGCP5Q96RT8 1024 aa17.68■□□□□ 0.42
DDX41-217ENST00000515562 NRSN2Q9GZP1 204 aa17.68■□□□□ 0.42
DDX41-217ENST00000515562 NCKIPSDQ9NZQ3 722 aa17.68■□□□□ 0.42
DDX41-217ENST00000515562 RALYQ9UKM9 306 aaKnown RBP17.68■□□□□ 0.42
DDX41-217ENST00000515562 CSNK1G3Q9Y6M4 447 aa17.68■□□□□ 0.42
DDX41-217ENST00000515562 APC2O95996 2303 aa17.67■□□□□ 0.42
DDX41-217ENST00000515562 TSPAN11A1L157 253 aa17.67■□□□□ 0.42
DDX41-217ENST00000515562 J3KR12 359 aa17.67■□□□□ 0.42
DDX41-217ENST00000515562 MMP20O60882 483 aa17.67■□□□□ 0.42
DDX41-217ENST00000515562 LRCH4O75427 683 aa17.67■□□□□ 0.42
DDX41-217ENST00000515562 PIGNO95427 931 aa17.67■□□□□ 0.42
DDX41-217ENST00000515562 GP1BAP07359 652 aa17.67■□□□□ 0.42
DDX41-217ENST00000515562 PCK1P35558 622 aa17.67■□□□□ 0.42
DDX41-217ENST00000515562 IGFALSP35858 605 aa17.67■□□□□ 0.42
DDX41-217ENST00000515562 PAPOLAP51003 745 aaKnown RBP17.67■□□□□ 0.42
DDX41-217ENST00000515562 DUSP3P51452 185 aaPredicted RBP17.67■□□□□ 0.42
DDX41-217ENST00000515562 YPEL5P62699 121 aa17.67■□□□□ 0.42
DDX41-217ENST00000515562 INSM1Q01101 510 aaPredicted RBP17.67■□□□□ 0.42
DDX41-217ENST00000515562 PPP6R3Q5H9R7 873 aaPredicted RBP17.67■□□□□ 0.42
DDX41-217ENST00000515562 ZCCHC8Q6NZY4 707 aaKnown RBP17.67■□□□□ 0.42
DDX41-217ENST00000515562 BRAT1Q6PJG6 821 aa17.67■□□□□ 0.42
DDX41-217ENST00000515562 VPS36Q86VN1 386 aa17.67■□□□□ 0.42
DDX41-217ENST00000515562 NETO2Q8NC67 525 aa17.67■□□□□ 0.42
DDX41-217ENST00000515562 BTN2A2Q8WVV5 523 aa17.67■□□□□ 0.42
DDX41-217ENST00000515562 APOLD1Q96LR9 279 aa17.67■□□□□ 0.42
DDX41-217ENST00000515562 KCTD15Q96SI1 283 aaPredicted RBP17.67■□□□□ 0.42
DDX41-217ENST00000515562 TRIM7Q9C029 511 aa17.67■□□□□ 0.42
DDX41-217ENST00000515562 SLC39A8Q9C0K1 460 aa17.67■□□□□ 0.42
DDX41-217ENST00000515562 SP110Q9HB58 689 aa17.67■□□□□ 0.42
DDX41-217ENST00000515562 SCUBE2Q9NQ36 999 aa17.67■□□□□ 0.42
DDX41-217ENST00000515562 CLCA2Q9UQC9 943 aa17.67■□□□□ 0.42
DDX41-217ENST00000515562 BZW2Q9Y6E2 419 aaKnown RBP17.67■□□□□ 0.42
DDX41-217ENST00000515562 A0A1W2PQJ5 194 aa17.66■□□□□ 0.42
DDX41-217ENST00000515562 K7ESM1 405 aa17.66■□□□□ 0.42
DDX41-217ENST00000515562 INSIG1O15503 277 aa17.66■□□□□ 0.42
DDX41-217ENST00000515562 TIMP2P16035 220 aa17.66■□□□□ 0.42
DDX41-217ENST00000515562 JUNDP17535 347 aa17.66■□□□□ 0.42
DDX41-217ENST00000515562 ERCC2P18074 760 aa17.66■□□□□ 0.42
DDX41-217ENST00000515562 CSNK1DP48730 415 aa17.66■□□□□ 0.42
DDX41-217ENST00000515562 HCAR3P49019 387 aa17.66■□□□□ 0.42
DDX41-217ENST00000515562 RFTN1Q14699 578 aaPredicted RBP17.66■□□□□ 0.42
DDX41-217ENST00000515562 ACAP1Q15027 740 aa17.66■□□□□ 0.42
DDX41-217ENST00000515562 UGP2Q16851 508 aa17.66■□□□□ 0.42
DDX41-217ENST00000515562 KLHL40Q2TBA0 621 aa17.66■□□□□ 0.42
DDX41-217ENST00000515562 TMEM52BQ4KMG9 183 aa17.66■□□□□ 0.42
DDX41-217ENST00000515562 TDRD12Q587J7 1177 aaKnown RBP17.66■□□□□ 0.42
DDX41-217ENST00000515562 AFMIDQ63HM1 303 aa17.66■□□□□ 0.42
DDX41-217ENST00000515562 ERAP2Q6P179 960 aa17.66■□□□□ 0.42
DDX41-217ENST00000515562 CYP4V2Q6ZWL3 525 aaPredicted RBP17.66■□□□□ 0.42
DDX41-217ENST00000515562 DCBLD1Q8N8Z6 715 aa17.66■□□□□ 0.42
DDX41-217ENST00000515562 IQCDQ96DY2 449 aa17.66■□□□□ 0.42
DDX41-217ENST00000515562 TBATAQ96M53 351 aa17.66■□□□□ 0.42
DDX41-217ENST00000515562 WRAP53Q9BUR4 548 aaKnown RBP17.66■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms