RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 ADNP2Q6IQ32 1131 aa11.31□□□□□ -0.6
LIMCH1-217ENST00000512946 IL27RAQ6UWB1 636 aa11.31□□□□□ -0.6
LIMCH1-217ENST00000512946 ZNF571Q7Z3V5 609 aaPredicted RBP11.31□□□□□ -0.6
LIMCH1-217ENST00000512946 SLC34A3Q8N130 599 aa11.31□□□□□ -0.6
LIMCH1-217ENST00000512946 TSEN2Q8NCE0 465 aaKnown RBP11.31□□□□□ -0.6
LIMCH1-217ENST00000512946 PPP1R16BQ96T49 567 aa11.31□□□□□ -0.6
LIMCH1-217ENST00000512946 BHLHE41Q9C0J9 482 aaPredicted RBP11.31□□□□□ -0.6
LIMCH1-217ENST00000512946 ACSS3Q9H6R3 686 aa11.31□□□□□ -0.6
LIMCH1-217ENST00000512946 SSU72Q9NP77 194 aaKnown RBP11.31□□□□□ -0.6
LIMCH1-217ENST00000512946 NCOA3Q9Y6Q9 1424 aa11.3□□□□□ -0.6
LIMCH1-217ENST00000512946 CENPBD1B2RD01 187 aa11.3□□□□□ -0.6
LIMCH1-217ENST00000512946 BCKDKO14874 412 aa11.3□□□□□ -0.6
LIMCH1-217ENST00000512946 H6PDO95479 791 aa11.3□□□□□ -0.6
LIMCH1-217ENST00000512946 GSTT2P0CG29 244 aa11.3□□□□□ -0.6
LIMCH1-217ENST00000512946 ZNHIT3Q15649 155 aaPredicted RBP11.3□□□□□ -0.6
LIMCH1-217ENST00000512946 FAM153CQ494X1 144 aa11.3□□□□□ -0.6
LIMCH1-217ENST00000512946 MARC1Q5VT66 337 aa11.3□□□□□ -0.6
LIMCH1-217ENST00000512946 LIPMQ5VYY2 423 aa11.3□□□□□ -0.6
LIMCH1-217ENST00000512946 WDR59Q6PJI9 974 aa11.3□□□□□ -0.6
LIMCH1-217ENST00000512946 AGMOQ6ZNB7 445 aa11.3□□□□□ -0.6
LIMCH1-217ENST00000512946 BEND5Q7L4P6 421 aa11.3□□□□□ -0.6
LIMCH1-217ENST00000512946 CEP76Q8TAP6 659 aa11.3□□□□□ -0.6
LIMCH1-217ENST00000512946 C8orf37Q96NL8 207 aa11.3□□□□□ -0.6
LIMCH1-217ENST00000512946 CGRRF1Q99675 332 aa11.3□□□□□ -0.6
LIMCH1-217ENST00000512946 FNDC11Q9BVV2 318 aa11.3□□□□□ -0.6
LIMCH1-217ENST00000512946 ZNF304Q9HCX3 659 aa11.3□□□□□ -0.6
LIMCH1-217ENST00000512946 NKIRAS2Q9NYR9 191 aa11.3□□□□□ -0.6
LIMCH1-217ENST00000512946 TBX20Q9UMR3 447 aa11.3□□□□□ -0.6
LIMCH1-217ENST00000512946 MAB21L2Q9Y586 359 aa11.3□□□□□ -0.6
LIMCH1-217ENST00000512946 PCDHGB6Q9Y5F9 930 aa11.3□□□□□ -0.6
LIMCH1-217ENST00000512946 FAM237BA0A1B0GVD1 139 aa11.3□□□□□ -0.6
LIMCH1-217ENST00000512946 SHOX2O60902 331 aaPredicted RBP11.3□□□□□ -0.6
LIMCH1-217ENST00000512946 RPS6KA4O75676 772 aa11.3□□□□□ -0.6
LIMCH1-217ENST00000512946 TCEA3O75764 348 aa11.3□□□□□ -0.6
LIMCH1-217ENST00000512946 ERVK-10P10266 1014 aa11.3□□□□□ -0.6
LIMCH1-217ENST00000512946 RARAP10276 462 aa11.3□□□□□ -0.6
LIMCH1-217ENST00000512946 CYP2C18P33260 490 aa11.3□□□□□ -0.6
LIMCH1-217ENST00000512946 RPS9P46781 194 aaKnown RBP11.3□□□□□ -0.6
LIMCH1-217ENST00000512946 ZNF543Q08ER8 600 aa11.3□□□□□ -0.6
LIMCH1-217ENST00000512946 FBXO43Q4G163 708 aa11.3□□□□□ -0.6
LIMCH1-217ENST00000512946 LRRC69Q6ZNQ3 347 aa11.3□□□□□ -0.6
LIMCH1-217ENST00000512946 GPR180Q86V85 440 aa11.3□□□□□ -0.6
LIMCH1-217ENST00000512946 PHC2Q8IXK0 858 aa11.3□□□□□ -0.6
LIMCH1-217ENST00000512946 MCOLN2Q8IZK6 566 aa11.3□□□□□ -0.6
LIMCH1-217ENST00000512946 HDDC3Q8N4P3 179 aa11.3□□□□□ -0.6
LIMCH1-217ENST00000512946 ALLCQ8N6M5 410 aa11.3□□□□□ -0.6
LIMCH1-217ENST00000512946 ZNF615Q8N8J6 731 aa11.3□□□□□ -0.6
LIMCH1-217ENST00000512946 LPCAT1Q8NF37 534 aa11.3□□□□□ -0.6
LIMCH1-217ENST00000512946 TOR1AIP2Q8NFQ8 470 aa11.3□□□□□ -0.6
LIMCH1-217ENST00000512946 STOML3Q8TAV4 291 aa11.3□□□□□ -0.6
LIMCH1-217ENST00000512946 IGDCC4Q8TDY8 1250 aa11.3□□□□□ -0.6
LIMCH1-217ENST00000512946 TBCDQ9BTW9 1192 aa11.3□□□□□ -0.6
LIMCH1-217ENST00000512946 NYAP2Q9P242 653 aa11.3□□□□□ -0.6
LIMCH1-217ENST00000512946 EIF3KQ9UBQ5 218 aaKnown RBP11.3□□□□□ -0.6
LIMCH1-217ENST00000512946 A0A1B0GVC2 190 aa11.3□□□□□ -0.6
LIMCH1-217ENST00000512946 NDUFS2O75306 463 aa11.3□□□□□ -0.6
LIMCH1-217ENST00000512946 SGPL1O95470 568 aa11.3□□□□□ -0.6
LIMCH1-217ENST00000512946 PRAMEF1O95521 474 aa11.3□□□□□ -0.6
LIMCH1-217ENST00000512946 ANXA5P08758 320 aa11.3□□□□□ -0.6
LIMCH1-217ENST00000512946 FGFR2P21802 821 aa11.3□□□□□ -0.6
LIMCH1-217ENST00000512946 CYP2F1P24903 491 aa11.3□□□□□ -0.6
LIMCH1-217ENST00000512946 SSTR1P30872 391 aa11.3□□□□□ -0.6
LIMCH1-217ENST00000512946 KLK7P49862 253 aa11.3□□□□□ -0.6
LIMCH1-217ENST00000512946 GCNT1Q02742 428 aa11.3□□□□□ -0.6
LIMCH1-217ENST00000512946 CNPY1Q3B7I2 92 aa11.3□□□□□ -0.6
LIMCH1-217ENST00000512946 ADAM32Q8TC27 787 aa11.3□□□□□ -0.6
LIMCH1-217ENST00000512946 MAFIPQ8WZ33 124 aa11.3□□□□□ -0.6
LIMCH1-217ENST00000512946 SLC4A9Q96Q91 983 aa11.3□□□□□ -0.6
LIMCH1-217ENST00000512946 TMEM109Q9BVC6 243 aa11.3□□□□□ -0.6
LIMCH1-217ENST00000512946 RDH8Q9NYR8 311 aa11.3□□□□□ -0.6
LIMCH1-217ENST00000512946 OVOS2A0A0G2JMS6 1433 aa11.3□□□□□ -0.6
LIMCH1-217ENST00000512946 SPATA31E1Q6ZUB1 1445 aa11.3□□□□□ -0.6
LIMCH1-217ENST00000512946 RRN3P2A6NIE6 340 aa11.3□□□□□ -0.6
LIMCH1-217ENST00000512946 ZBTB14O43829 449 aa11.3□□□□□ -0.6
LIMCH1-217ENST00000512946 NRP2O60462 931 aa11.3□□□□□ -0.6
LIMCH1-217ENST00000512946 GRAP2O75791 330 aa11.3□□□□□ -0.6
LIMCH1-217ENST00000512946 CATP04040 527 aaKnown RBP11.3□□□□□ -0.6
LIMCH1-217ENST00000512946 COL6A2P12110 1019 aa11.3□□□□□ -0.6
LIMCH1-217ENST00000512946 SLC5A3P53794 718 aa11.3□□□□□ -0.6
LIMCH1-217ENST00000512946 MOGQ16653 247 aa11.3□□□□□ -0.6
LIMCH1-217ENST00000512946 SLC9A6Q92581 669 aa11.3□□□□□ -0.6
LIMCH1-217ENST00000512946 SLC5A5Q92911 643 aa11.3□□□□□ -0.6
LIMCH1-217ENST00000512946 MTMR8Q96EF0 704 aa11.3□□□□□ -0.6
LIMCH1-217ENST00000512946 SLC47A1Q96FL8 570 aa11.3□□□□□ -0.6
LIMCH1-217ENST00000512946 C7orf26Q96N11 449 aa11.3□□□□□ -0.6
LIMCH1-217ENST00000512946 LRRC19Q9H756 370 aa11.3□□□□□ -0.6
LIMCH1-217ENST00000512946 PDE10AQ9Y233 779 aa11.3□□□□□ -0.6
LIMCH1-217ENST00000512946 DUSP10Q9Y6W6 482 aa11.3□□□□□ -0.6
LIMCH1-217ENST00000512946 FABP12A6NFH5 140 aa11.29□□□□□ -0.6
LIMCH1-217ENST00000512946 HBP1O60381 514 aa11.29□□□□□ -0.6
LIMCH1-217ENST00000512946 SERPINA3P01011 423 aa11.29□□□□□ -0.6
LIMCH1-217ENST00000512946 TLX1P31314 330 aaPredicted RBP11.29□□□□□ -0.6
LIMCH1-217ENST00000512946 POU5F1Q01860 360 aaKnown RBP11.29□□□□□ -0.6
LIMCH1-217ENST00000512946 ZBED5Q49AG3 693 aa11.29□□□□□ -0.6
LIMCH1-217ENST00000512946 SEPT12Q8IYM1 358 aa11.29□□□□□ -0.6
LIMCH1-217ENST00000512946 ZNF557Q8N988 423 aaPredicted RBP11.29□□□□□ -0.6
LIMCH1-217ENST00000512946 ZNF248Q8NDW4 579 aa11.29□□□□□ -0.6
LIMCH1-217ENST00000512946 OR52K2Q8NGK3 314 aa11.29□□□□□ -0.6
LIMCH1-217ENST00000512946 KCTD15Q96SI1 283 aaPredicted RBP11.29□□□□□ -0.6
LIMCH1-217ENST00000512946 XPNPEP3Q9NQH7 507 aa11.29□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms