RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 FIS1Q9Y3D6 152 aa12.15□□□□□ -0.46
LIMCH1-213ENST00000511496 V9GYQ6 96 aa12.15□□□□□ -0.46
LIMCH1-213ENST00000511496 LOC102724428A0A0B4J2F2 783 aa12.15□□□□□ -0.46
LIMCH1-213ENST00000511496 APOA1P02647 267 aa12.15□□□□□ -0.46
LIMCH1-213ENST00000511496 ALBP02768 609 aa12.15□□□□□ -0.46
LIMCH1-213ENST00000511496 APRTP07741 180 aa12.15□□□□□ -0.46
LIMCH1-213ENST00000511496 TSHRP16473 764 aa12.15□□□□□ -0.46
LIMCH1-213ENST00000511496 IL10P22301 178 aa12.15□□□□□ -0.46
LIMCH1-213ENST00000511496 NUDT1P36639 197 aa12.15□□□□□ -0.46
LIMCH1-213ENST00000511496 SLC26A3P40879 764 aa12.15□□□□□ -0.46
LIMCH1-213ENST00000511496 SIK1P57059 783 aa12.15□□□□□ -0.46
LIMCH1-213ENST00000511496 NCS1P62166 190 aa12.15□□□□□ -0.46
LIMCH1-213ENST00000511496 DGCR6Q14129 220 aa12.15□□□□□ -0.46
LIMCH1-213ENST00000511496 C6orf132Q5T0Z8 1188 aa12.15□□□□□ -0.46
LIMCH1-213ENST00000511496 NXNL2Q5VZ03 156 aa12.15□□□□□ -0.46
LIMCH1-213ENST00000511496 DARS2Q6PI48 645 aaKnown RBP12.15□□□□□ -0.46
LIMCH1-213ENST00000511496 SPATA18Q8TC71 538 aa12.15□□□□□ -0.46
LIMCH1-213ENST00000511496 PNPT1Q8TCS8 783 aaKnown RBP12.15□□□□□ -0.46
LIMCH1-213ENST00000511496 C6orf62Q9GZU0 229 aaPredicted RBP12.15□□□□□ -0.46
LIMCH1-213ENST00000511496 IL1RL2Q9HB29 575 aa12.15□□□□□ -0.46
LIMCH1-213ENST00000511496 NTN4Q9HB63 628 aa12.15□□□□□ -0.46
LIMCH1-213ENST00000511496 CHRAC1Q9NRG0 131 aa12.15□□□□□ -0.46
LIMCH1-213ENST00000511496 FARSBQ9NSD9 589 aaKnown RBP12.15□□□□□ -0.46
LIMCH1-213ENST00000511496 SNX5Q9Y5X3 404 aa12.15□□□□□ -0.46
LIMCH1-213ENST00000511496 TCRBV3S1A0A5B6 114 aa12.14□□□□□ -0.47
LIMCH1-213ENST00000511496 PDPK1O15530 556 aa12.14□□□□□ -0.47
LIMCH1-213ENST00000511496 PRKCBP05771 671 aa12.14□□□□□ -0.47
LIMCH1-213ENST00000511496 KRT20P35900 424 aa12.14□□□□□ -0.47
LIMCH1-213ENST00000511496 CDKN2BP42772 138 aa12.14□□□□□ -0.47
LIMCH1-213ENST00000511496 HARS2P49590 506 aaKnown RBP12.14□□□□□ -0.47
LIMCH1-213ENST00000511496 YWHAZP63104 245 aaKnown RBP12.14□□□□□ -0.47
LIMCH1-213ENST00000511496 PRPSAP1Q14558 356 aa12.14□□□□□ -0.47
LIMCH1-213ENST00000511496 ZNF267Q14586 743 aaPredicted RBP12.14□□□□□ -0.47
LIMCH1-213ENST00000511496 PLEKHM3Q6ZWE6 761 aa12.14□□□□□ -0.47
LIMCH1-213ENST00000511496 STXBP4Q6ZWJ1 553 aa12.14□□□□□ -0.47
LIMCH1-213ENST00000511496 ADGRG5Q8IZF4 528 aa12.14□□□□□ -0.47
LIMCH1-213ENST00000511496 METTL4Q8N3J2 472 aa12.14□□□□□ -0.47
LIMCH1-213ENST00000511496 LRRN4Q8WUT4 740 aa12.14□□□□□ -0.47
LIMCH1-213ENST00000511496 TOPORSQ9NS56 1045 aaPredicted RBP12.14□□□□□ -0.47
LIMCH1-213ENST00000511496 RAD54BQ9Y620 910 aa12.14□□□□□ -0.47
LIMCH1-213ENST00000511496 TJP1Q07157 1748 aa12.14□□□□□ -0.47
LIMCH1-213ENST00000511496 C1QAP02745 245 aa12.14□□□□□ -0.47
LIMCH1-213ENST00000511496 RBP1P09455 135 aa12.14□□□□□ -0.47
LIMCH1-213ENST00000511496 JUNBP17275 347 aaPredicted RBP12.14□□□□□ -0.47
LIMCH1-213ENST00000511496 ADRA2BP18089 450 aa12.14□□□□□ -0.47
LIMCH1-213ENST00000511496 OSBPP22059 807 aa12.14□□□□□ -0.47
LIMCH1-213ENST00000511496 TYK2P29597 1187 aa12.14□□□□□ -0.47
LIMCH1-213ENST00000511496 PRDX5P30044 214 aa12.14□□□□□ -0.47
LIMCH1-213ENST00000511496 TGFBR1P36897 503 aa12.14□□□□□ -0.47
LIMCH1-213ENST00000511496 HTR3AP46098 478 aa12.14□□□□□ -0.47
LIMCH1-213ENST00000511496 ZMYND11Q15326 602 aa12.14□□□□□ -0.47
LIMCH1-213ENST00000511496 TOR2AQ5JU69 321 aa12.14□□□□□ -0.47
LIMCH1-213ENST00000511496 CDH24Q86UP0 819 aa12.14□□□□□ -0.47
LIMCH1-213ENST00000511496 CMTR2Q8IYT2 770 aaKnown RBP12.14□□□□□ -0.47
LIMCH1-213ENST00000511496 CCDC185Q8N715 623 aa12.14□□□□□ -0.47
LIMCH1-213ENST00000511496 MCFD2Q8NI22 146 aa12.14□□□□□ -0.47
LIMCH1-213ENST00000511496 FEZF2Q8TBJ5 459 aa12.14□□□□□ -0.47
LIMCH1-213ENST00000511496 SH3KBP1Q96B97 665 aa12.14□□□□□ -0.47
LIMCH1-213ENST00000511496 ZNF277Q9NRM2 450 aaPredicted RBP12.14□□□□□ -0.47
LIMCH1-213ENST00000511496 TMLHEQ9NVH6 421 aa12.14□□□□□ -0.47
LIMCH1-213ENST00000511496 PCDHB12Q9Y5F1 795 aa12.14□□□□□ -0.47
LIMCH1-213ENST00000511496 LAMB2P55268 1798 aa12.14□□□□□ -0.47
LIMCH1-213ENST00000511496 UBE4BO95155 1302 aa12.14□□□□□ -0.47
LIMCH1-213ENST00000511496 GIMAP1-GIMAP5A0A087WTJ2 511 aa12.14□□□□□ -0.47
LIMCH1-213ENST00000511496 SHOXO15266 292 aa12.14□□□□□ -0.47
LIMCH1-213ENST00000511496 MAP3K6O95382 1288 aa12.14□□□□□ -0.47
LIMCH1-213ENST00000511496 RPS9P46781 194 aaKnown RBP12.14□□□□□ -0.47
LIMCH1-213ENST00000511496 HCAR3P49019 387 aa12.14□□□□□ -0.47
LIMCH1-213ENST00000511496 AP2S1P53680 142 aaPredicted RBP12.14□□□□□ -0.47
LIMCH1-213ENST00000511496 C1orf220Q5T0J3 134 aa12.14□□□□□ -0.47
LIMCH1-213ENST00000511496 TREML2Q5T2D2 321 aa12.14□□□□□ -0.47
LIMCH1-213ENST00000511496 C12orf60Q5U649 245 aa12.14□□□□□ -0.47
LIMCH1-213ENST00000511496 SEL1L3Q68CR1 1132 aa12.14□□□□□ -0.47
LIMCH1-213ENST00000511496 CASC4Q6P4E1 433 aa12.14□□□□□ -0.47
LIMCH1-213ENST00000511496 VPS37AQ8NEZ2 397 aa12.14□□□□□ -0.47
LIMCH1-213ENST00000511496 TAS1R2Q8TE23 839 aa12.14□□□□□ -0.47
LIMCH1-213ENST00000511496 NSUN4Q96CB9 384 aaKnown RBP12.14□□□□□ -0.47
LIMCH1-213ENST00000511496 GIMAP5Q96F15 307 aa12.14□□□□□ -0.47
LIMCH1-213ENST00000511496 FBXO8Q9NRD0 319 aa12.14□□□□□ -0.47
LIMCH1-213ENST00000511496 CCDC167Q9P0B6 97 aa12.14□□□□□ -0.47
LIMCH1-213ENST00000511496 PCSK1NQ9UHG2 260 aa12.14□□□□□ -0.47
LIMCH1-213ENST00000511496 WBP11Q9Y2W2 641 aaKnown RBP12.14□□□□□ -0.47
LIMCH1-213ENST00000511496 LTN1O94822 1766 aa12.13□□□□□ -0.47
LIMCH1-213ENST00000511496 ISPDA4D126 451 aa12.13□□□□□ -0.47
LIMCH1-213ENST00000511496 GPR25O00155 361 aa12.13□□□□□ -0.47
LIMCH1-213ENST00000511496 PGK2P07205 417 aa12.13□□□□□ -0.47
LIMCH1-213ENST00000511496 ATP6V1B2P21281 511 aa12.13□□□□□ -0.47
LIMCH1-213ENST00000511496 ABCG1P45844 678 aa12.13□□□□□ -0.47
LIMCH1-213ENST00000511496 CBX5P45973 191 aa12.13□□□□□ -0.47
LIMCH1-213ENST00000511496 SNRPD2P62316 118 aaKnown RBP12.13□□□□□ -0.47
LIMCH1-213ENST00000511496 DBPQ10586 325 aaPredicted RBP12.13□□□□□ -0.47
LIMCH1-213ENST00000511496 INTS11Q5TA45 600 aaKnown RBP12.13□□□□□ -0.47
LIMCH1-213ENST00000511496 DGLUCYQ7Z3D6 616 aa12.13□□□□□ -0.47
LIMCH1-213ENST00000511496 RFX6Q8HWS3 928 aa12.13□□□□□ -0.47
LIMCH1-213ENST00000511496 GLB1L3Q8NCI6 653 aaPredicted RBP12.13□□□□□ -0.47
LIMCH1-213ENST00000511496 FYTTD1Q96QD9 318 aaKnown RBP12.13□□□□□ -0.47
LIMCH1-213ENST00000511496 ILKAPQ9H0C8 392 aaPredicted RBP12.13□□□□□ -0.47
LIMCH1-213ENST00000511496 POLMQ9NP87 494 aaPredicted RBP12.13□□□□□ -0.47
LIMCH1-213ENST00000511496 ENTPD7Q9NQZ7 604 aa12.13□□□□□ -0.47
LIMCH1-213ENST00000511496 COPG1Q9Y678 874 aaKnown RBP12.13□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms