RNA–Protein interactions for RNA: ENST00000503945.2

MED28-203, Transcript of mediator complex subunit 28, humanhuman

TSL 1 (best)

Gene MED28, Length 879 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MED28-203ENST00000503945 VPS36Q86VN1 386 aa12.11□□□□□ -0.47
MED28-203ENST00000503945 PSTKQ8IV42 348 aaKnown RBP12.11□□□□□ -0.47
MED28-203ENST00000503945 NETO2Q8NC67 525 aa12.11□□□□□ -0.47
MED28-203ENST00000503945 CXorf40AQ8TE69 158 aa12.11□□□□□ -0.47
MED28-203ENST00000503945 FNIP1Q8TF40 1166 aa12.11□□□□□ -0.47
MED28-203ENST00000503945 TRIM11Q96F44 468 aa12.11□□□□□ -0.47
MED28-203ENST00000503945 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP12.11□□□□□ -0.47
MED28-203ENST00000503945 C1QTNF7Q9BXJ2 289 aa12.11□□□□□ -0.47
MED28-203ENST00000503945 MYO1AQ9UBC5 1043 aa12.11□□□□□ -0.47
MED28-203ENST00000503945 DKK3Q9UBP4 350 aa12.11□□□□□ -0.47
MED28-203ENST00000503945 UBA2Q9UBT2 640 aaPredicted RBP12.11□□□□□ -0.47
MED28-203ENST00000503945 AP4E1Q9UPM8 1137 aa12.11□□□□□ -0.47
MED28-203ENST00000503945 NEU3Q9UQ49 428 aa12.11□□□□□ -0.47
MED28-203ENST00000503945 SCINQ9Y6U3 715 aa12.11□□□□□ -0.47
MED28-203ENST00000503945 SPTY2D1-AS1A0A0U1RR47 76 aa12.1□□□□□ -0.47
MED28-203ENST00000503945 DDX3XO00571 662 aaKnown RBP eCLIP12.1□□□□□ -0.472e-17■■■□□ 19.1
MED28-203ENST00000503945 TRIM38O00635 465 aa12.1□□□□□ -0.47
MED28-203ENST00000503945 SCAMP1O15126 338 aa12.1□□□□□ -0.47
MED28-203ENST00000503945 TLX3O43711 291 aaPredicted RBP12.1□□□□□ -0.47
MED28-203ENST00000503945 MMP20O60882 483 aa12.1□□□□□ -0.47
MED28-203ENST00000503945 PALMO75781 387 aa12.1□□□□□ -0.47
MED28-203ENST00000503945 PIAS2O75928 621 aa12.1□□□□□ -0.47
MED28-203ENST00000503945 TM7SF2O76062 418 aa12.1□□□□□ -0.47
MED28-203ENST00000503945 ZIC2O95409 532 aaPredicted RBP12.1□□□□□ -0.47
MED28-203ENST00000503945 ACP1P24666 158 aa12.1□□□□□ -0.47
MED28-203ENST00000503945 MIPP30301 263 aa12.1□□□□□ -0.47
MED28-203ENST00000503945 HCAR3P49019 387 aa12.1□□□□□ -0.47
MED28-203ENST00000503945 PAPOLAP51003 745 aaKnown RBP12.1□□□□□ -0.47
MED28-203ENST00000503945 ZNF135P52742 658 aaPredicted RBP12.1□□□□□ -0.47
MED28-203ENST00000503945 UBASH3AP57075 661 aa12.1□□□□□ -0.47
MED28-203ENST00000503945 DAB2P98082 770 aa12.1□□□□□ -0.47
MED28-203ENST00000503945 TARDBPQ13148 414 aaKnown RBP eCLIP12.1□□□□□ -0.47
MED28-203ENST00000503945 PTK2BQ14289 1009 aa12.1□□□□□ -0.47
MED28-203ENST00000503945 FGL2Q14314 439 aa12.1□□□□□ -0.47
MED28-203ENST00000503945 ZNF542PQ5EBM4 170 aa12.1□□□□□ -0.47
MED28-203ENST00000503945 PPP6R3Q5H9R7 873 aaPredicted RBP12.1□□□□□ -0.47
MED28-203ENST00000503945 FIGNQ5HY92 759 aa12.1□□□□□ -0.47
MED28-203ENST00000503945 CFAP58Q5T655 872 aa12.1□□□□□ -0.47
MED28-203ENST00000503945 GCNT7Q6ZNI0 430 aa12.1□□□□□ -0.47
MED28-203ENST00000503945 DNAAF5Q86Y56 855 aa12.1□□□□□ -0.47
MED28-203ENST00000503945 OR4C6Q8NH72 309 aa12.1□□□□□ -0.47
MED28-203ENST00000503945 CPLX3Q8WVH0 158 aa12.1□□□□□ -0.47
MED28-203ENST00000503945 CENPTQ96BT3 561 aa12.1□□□□□ -0.47
MED28-203ENST00000503945 CELF6Q96J87 481 aaKnown RBP12.1□□□□□ -0.47
MED28-203ENST00000503945 ZNF641Q96N77 438 aaPredicted RBP12.1□□□□□ -0.47
MED28-203ENST00000503945 DUSP23Q9BVJ7 150 aa12.1□□□□□ -0.47
MED28-203ENST00000503945 SLC39A8Q9C0K1 460 aa12.1□□□□□ -0.47
MED28-203ENST00000503945 KLC2Q9H0B6 622 aa12.1□□□□□ -0.47
MED28-203ENST00000503945 ABCG4Q9H172 646 aa12.1□□□□□ -0.47
MED28-203ENST00000503945 SUV39H2Q9H5I1 410 aa12.1□□□□□ -0.47
MED28-203ENST00000503945 EVA1BQ9NVM1 165 aa12.1□□□□□ -0.47
MED28-203ENST00000503945 GPATCH2LQ9NWQ4 482 aa12.1□□□□□ -0.47
MED28-203ENST00000503945 UCKL1Q9NWZ5 548 aa12.1□□□□□ -0.47
MED28-203ENST00000503945 RAI2Q9Y5P3 530 aa12.1□□□□□ -0.47
MED28-203ENST00000503945 SYCE3A1L190 88 aa12.09□□□□□ -0.47
MED28-203ENST00000503945 GOLGA6L19H0YKK7 550 aa12.09□□□□□ -0.47
MED28-203ENST00000503945 H3BM21 787 aa12.09□□□□□ -0.47
MED28-203ENST00000503945 J3KR12 359 aa12.09□□□□□ -0.47
MED28-203ENST00000503945 AREL1O15033 823 aa12.09□□□□□ -0.47
MED28-203ENST00000503945 RAD51BO15315 384 aa12.09□□□□□ -0.47
MED28-203ENST00000503945 FFAR2O15552 330 aa12.09□□□□□ -0.47
MED28-203ENST00000503945 ATMINO43313 823 aaPredicted RBP12.09□□□□□ -0.47
MED28-203ENST00000503945 CSF2P04141 144 aa12.09□□□□□ -0.47
MED28-203ENST00000503945 PRB1P04280 392 aa12.09□□□□□ -0.47
MED28-203ENST00000503945 EIF2S3P41091 472 aaKnown RBP12.09□□□□□ -0.47
MED28-203ENST00000503945 ABL2P42684 1182 aa12.09□□□□□ -0.47
MED28-203ENST00000503945 ABCG1P45844 678 aa12.09□□□□□ -0.47
MED28-203ENST00000503945 ACADVLP49748 655 aa12.09□□□□□ -0.47
MED28-203ENST00000503945 DUSP3P51452 185 aaPredicted RBP12.09□□□□□ -0.47
MED28-203ENST00000503945 THOP1P52888 689 aa12.09□□□□□ -0.47
MED28-203ENST00000503945 POLR2LP62875 67 aaKnown RBP12.09□□□□□ -0.47
MED28-203ENST00000503945 FANCCQ00597 558 aa12.09□□□□□ -0.47
MED28-203ENST00000503945 SEMG2Q02383 582 aa12.09□□□□□ -0.47
MED28-203ENST00000503945 NSUN2Q08J23 767 aaKnown RBP eCLIP12.09□□□□□ -0.47
MED28-203ENST00000503945 ELP6Q0PNE2 266 aa12.09□□□□□ -0.47
MED28-203ENST00000503945 PDE1CQ14123 709 aaPredicted RBP12.09□□□□□ -0.47
MED28-203ENST00000503945 FZD2Q14332 565 aa12.09□□□□□ -0.47
MED28-203ENST00000503945 NFKBIBQ15653 356 aa12.09□□□□□ -0.47
MED28-203ENST00000503945 UGP2Q16851 508 aa12.09□□□□□ -0.47
MED28-203ENST00000503945 KLHL40Q2TBA0 621 aa12.09□□□□□ -0.47
MED28-203ENST00000503945 PROX2Q3B8N5 592 aa12.09□□□□□ -0.47
MED28-203ENST00000503945 KYAT3Q6YP21 454 aaKnown RBP12.09□□□□□ -0.47
MED28-203ENST00000503945 RFX8Q6ZV50 586 aa12.09□□□□□ -0.47
MED28-203ENST00000503945 SLC22A18ASQ8N1D0 253 aa12.09□□□□□ -0.47
MED28-203ENST00000503945 LZTR1Q8N653 840 aa12.09□□□□□ -0.47
MED28-203ENST00000503945 ARFGAP1Q8N6T3 406 aa12.09□□□□□ -0.47
MED28-203ENST00000503945 BTN2A2Q8WVV5 523 aa12.09□□□□□ -0.47
MED28-203ENST00000503945 SYN2Q92777 582 aaPredicted RBP12.09□□□□□ -0.47
MED28-203ENST00000503945 ZNF653Q96CK0 615 aa12.09□□□□□ -0.47
MED28-203ENST00000503945 KLF6Q99612 283 aaPredicted RBP12.09□□□□□ -0.47
MED28-203ENST00000503945 ISCUQ9H1K1 167 aa12.09□□□□□ -0.47
MED28-203ENST00000503945 LRRC19Q9H756 370 aa12.09□□□□□ -0.47
MED28-203ENST00000503945 ZWILCHQ9H900 591 aa12.09□□□□□ -0.47
MED28-203ENST00000503945 CBX8Q9HC52 389 aa12.09□□□□□ -0.47
MED28-203ENST00000503945 NLGN3Q9NZ94 848 aa12.09□□□□□ -0.47
MED28-203ENST00000503945 AK5Q9Y6K8 562 aa12.09□□□□□ -0.47
MED28-203ENST00000503945 CSNK1G3Q9Y6M4 447 aa12.09□□□□□ -0.47
MED28-203ENST00000503945 A0A1W2PQJ5 194 aa12.08□□□□□ -0.48
MED28-203ENST00000503945 TMEM110-MUSTN1A8MSY1 372 aa12.08□□□□□ -0.48
MED28-203ENST00000503945 DFFAO00273 331 aa12.08□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms