RNA–Protein interactions for RNA: ENST00000502850.5

NUP54-202, Transcript of nucleoporin 54, humanhuman

TSL 1 (best)

Gene NUP54, Length 1,604 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-202ENST00000502850 DRGXA6NNA5 263 aa12.09□□□□□ -0.47
NUP54-202ENST00000502850 GOLGA8TH3BQL2 631 aa12.09□□□□□ -0.47
NUP54-202ENST00000502850 TK2O00142 265 aa12.09□□□□□ -0.47
NUP54-202ENST00000502850 MATN2O00339 956 aa12.09□□□□□ -0.47
NUP54-202ENST00000502850 PHGDHO43175 533 aaKnown RBP12.09□□□□□ -0.47
NUP54-202ENST00000502850 MAP3K7O43318 606 aa12.09□□□□□ -0.47
NUP54-202ENST00000502850 CCNT2O60583 730 aaKnown RBP12.09□□□□□ -0.47
NUP54-202ENST00000502850 KRT36O76013 467 aa12.09□□□□□ -0.47
NUP54-202ENST00000502850 PEX11BO96011 259 aa12.09□□□□□ -0.47
NUP54-202ENST00000502850 RBP1P09455 135 aa12.09□□□□□ -0.47
NUP54-202ENST00000502850 THRAP10827 490 aa12.09□□□□□ -0.47
NUP54-202ENST00000502850 SAT1P21673 171 aa12.09□□□□□ -0.47
NUP54-202ENST00000502850 CPOXP36551 454 aa12.09□□□□□ -0.47
NUP54-202ENST00000502850 LEPRP48357 1165 aaKnown RBP12.09□□□□□ -0.47
NUP54-202ENST00000502850 MPP1Q00013 466 aa12.09□□□□□ -0.47
NUP54-202ENST00000502850 ITKQ08881 620 aa12.09□□□□□ -0.47
NUP54-202ENST00000502850 MRPL58Q14197 206 aaKnown RBP12.09□□□□□ -0.47
NUP54-202ENST00000502850 NAA25Q14CX7 972 aa12.09□□□□□ -0.47
NUP54-202ENST00000502850 CNGA3Q16281 694 aa12.09□□□□□ -0.47
NUP54-202ENST00000502850 DDR2Q16832 855 aa12.09□□□□□ -0.47
NUP54-202ENST00000502850 ARTNQ5T4W7 220 aa12.09□□□□□ -0.47
NUP54-202ENST00000502850 TSTD2Q5T7W7 516 aa12.09□□□□□ -0.47
NUP54-202ENST00000502850 SNX30Q5VWJ9 437 aa12.09□□□□□ -0.47
NUP54-202ENST00000502850 TRAF7Q6Q0C0 670 aa12.09□□□□□ -0.47
NUP54-202ENST00000502850 RIPOR1Q6ZS17 1223 aa12.09□□□□□ -0.47
NUP54-202ENST00000502850 CENPLQ8N0S6 344 aaPredicted RBP12.09□□□□□ -0.47
NUP54-202ENST00000502850 FSTL5Q8N475 847 aaPredicted RBP12.09□□□□□ -0.47
NUP54-202ENST00000502850 SLC43A3Q8NBI5 491 aa12.09□□□□□ -0.47
NUP54-202ENST00000502850 ACTRT2Q8TDY3 377 aa12.09□□□□□ -0.47
NUP54-202ENST00000502850 DIS3LQ8TF46 1054 aaKnown RBP12.09□□□□□ -0.47
NUP54-202ENST00000502850 KCTD4Q8WVF5 259 aa12.09□□□□□ -0.47
NUP54-202ENST00000502850 LINC01599Q8WXQ3 324 aa12.09□□□□□ -0.47
NUP54-202ENST00000502850 HMCESQ96FZ2 354 aa12.09□□□□□ -0.47
NUP54-202ENST00000502850 PGLYRP2Q96PD5 576 aa12.09□□□□□ -0.47
NUP54-202ENST00000502850 VCX3BQ9H321 246 aa12.09□□□□□ -0.47
NUP54-202ENST00000502850 NT5MQ9NPB1 228 aa12.09□□□□□ -0.47
NUP54-202ENST00000502850 NDFIP2Q9NV92 336 aa12.09□□□□□ -0.47
NUP54-202ENST00000502850 MARCH2Q9P0N8 246 aa12.09□□□□□ -0.47
NUP54-202ENST00000502850 CPSF2Q9P2I0 782 aaKnown RBP12.09□□□□□ -0.47
NUP54-202ENST00000502850 XPR1Q9UBH6 696 aa12.09□□□□□ -0.47
NUP54-202ENST00000502850 SLC7A8Q9UHI5 535 aa12.09□□□□□ -0.47
NUP54-202ENST00000502850 OGDHLQ9ULD0 1010 aa12.09□□□□□ -0.47
NUP54-202ENST00000502850 CDYLQ9Y232 598 aa12.09□□□□□ -0.47
NUP54-202ENST00000502850 PALM2-AKAP2B1ALY0 433 aaPredicted RBP12.08□□□□□ -0.48
NUP54-202ENST00000502850 F8W810 466 aa12.08□□□□□ -0.48
NUP54-202ENST00000502850 PIGNO95427 931 aa12.08□□□□□ -0.48
NUP54-202ENST00000502850 IGLV3-27P01718 113 aa12.08□□□□□ -0.48
NUP54-202ENST00000502850 FGF1P05230 155 aa12.08□□□□□ -0.48
NUP54-202ENST00000502850 HLA-DPA1P20036 260 aa12.08□□□□□ -0.48
NUP54-202ENST00000502850 FGFR3P22607 806 aa12.08□□□□□ -0.48
NUP54-202ENST00000502850 GLDCP23378 1020 aa12.08□□□□□ -0.48
NUP54-202ENST00000502850 ATP5F1P24539 256 aaPredicted RBP12.08□□□□□ -0.48
NUP54-202ENST00000502850 ARNTP27540 789 aa12.08□□□□□ -0.48
NUP54-202ENST00000502850 GABRB3P28472 473 aa12.08□□□□□ -0.48
NUP54-202ENST00000502850 ARRB2P32121 409 aa12.08□□□□□ -0.48
NUP54-202ENST00000502850 PBX3P40426 434 aa12.08□□□□□ -0.48
NUP54-202ENST00000502850 ABCG1P45844 678 aa12.08□□□□□ -0.48
NUP54-202ENST00000502850 SATB1Q01826 763 aa12.08□□□□□ -0.48
NUP54-202ENST00000502850 GPR17Q13304 367 aa12.08□□□□□ -0.48
NUP54-202ENST00000502850 CTBP1Q13363 440 aa12.08□□□□□ -0.48
NUP54-202ENST00000502850 BFSP2Q13515 415 aa12.08□□□□□ -0.48
NUP54-202ENST00000502850 HERC3Q15034 1050 aa12.08□□□□□ -0.48
NUP54-202ENST00000502850 POLD3Q15054 466 aaPredicted RBP12.08□□□□□ -0.48
NUP54-202ENST00000502850 PCSK7Q16549 785 aa12.08□□□□□ -0.48
NUP54-202ENST00000502850 SH2D4BQ5SQS7 431 aa12.08□□□□□ -0.48
NUP54-202ENST00000502850 TMCO4Q5TGY1 634 aa12.08□□□□□ -0.48
NUP54-202ENST00000502850 FAM171A1Q5VUB5 890 aa12.08□□□□□ -0.48
NUP54-202ENST00000502850 C16orf89Q6UX73 402 aa12.08□□□□□ -0.48
NUP54-202ENST00000502850 NAPRTQ6XQN6 538 aa12.08□□□□□ -0.48
NUP54-202ENST00000502850 LRRC8DQ7L1W4 858 aa12.08□□□□□ -0.48
NUP54-202ENST00000502850 TMC7Q7Z402 723 aa12.08□□□□□ -0.48
NUP54-202ENST00000502850 ADGRG6Q86SQ4 1221 aa12.08□□□□□ -0.48
NUP54-202ENST00000502850 RTN4RL1Q86UN2 441 aaPredicted RBP12.08□□□□□ -0.48
NUP54-202ENST00000502850 ZNF354CQ86Y25 554 aa12.08□□□□□ -0.48
NUP54-202ENST00000502850 MYLK4Q86YV6 388 aaPredicted RBP12.08□□□□□ -0.48
NUP54-202ENST00000502850 APLFQ8IW19 511 aaPredicted RBP12.08□□□□□ -0.48
NUP54-202ENST00000502850 DENND6AQ8IWF6 608 aa12.08□□□□□ -0.48
NUP54-202ENST00000502850 GPATCH11Q8N954 259 aa12.08□□□□□ -0.48
NUP54-202ENST00000502850 WDR60Q8WVS4 1066 aa12.08□□□□□ -0.48
NUP54-202ENST00000502850 PABPC5Q96DU9 382 aaKnown RBP12.08□□□□□ -0.48
NUP54-202ENST00000502850 ZNF419Q96HQ0 510 aaPredicted RBP12.08□□□□□ -0.48
NUP54-202ENST00000502850 SERPINI1Q99574 410 aa12.08□□□□□ -0.48
NUP54-202ENST00000502850 TMEM175Q9BSA9 504 aa12.08□□□□□ -0.48
NUP54-202ENST00000502850 POLR1EQ9GZS1 481 aaKnown RBP12.08□□□□□ -0.48
NUP54-202ENST00000502850 MFSD1Q9H3U5 465 aa12.08□□□□□ -0.48
NUP54-202ENST00000502850 NOL6Q9H6R4 1146 aaKnown RBP12.08□□□□□ -0.48
NUP54-202ENST00000502850 EML4Q9HC35 981 aaKnown RBP12.08□□□□□ -0.48
NUP54-202ENST00000502850 STARD7Q9NQZ5 370 aa12.08□□□□□ -0.48
NUP54-202ENST00000502850 GEMIN8Q9NWZ8 242 aaKnown RBP12.08□□□□□ -0.48
NUP54-202ENST00000502850 BCAP29Q9UHQ4 241 aa12.08□□□□□ -0.48
NUP54-202ENST00000502850 PRPF19Q9UMS4 504 aaKnown RBP12.08□□□□□ -0.48
NUP54-202ENST00000502850 LRCH1Q9Y2L9 728 aa12.08□□□□□ -0.48
NUP54-202ENST00000502850 PCDHB7Q9Y5E2 793 aa12.08□□□□□ -0.48
NUP54-202ENST00000502850 GREB1Q4ZG55 1949 aa12.08□□□□□ -0.48
NUP54-202ENST00000502850 TARM1B6A8C7 271 aa12.08□□□□□ -0.48
NUP54-202ENST00000502850 B4GALT3O60512 393 aa12.08□□□□□ -0.48
NUP54-202ENST00000502850 EPOP01588 193 aa12.08□□□□□ -0.48
NUP54-202ENST00000502850 COX4I1P13073 169 aa12.08□□□□□ -0.48
NUP54-202ENST00000502850 SELPP16109 830 aa12.08□□□□□ -0.48
NUP54-202ENST00000502850 PPARGP37231 505 aaPredicted RBP12.08□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms