RNA–Protein interactions for RNA: ENST00000491659.5

USP39-217, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 648 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-217ENST00000491659 PCDH18Q9HCL0 1135 aa15.27■□□□□ 0.04
USP39-217ENST00000491659 GGT7Q9UJ14 662 aa15.27■□□□□ 0.04
USP39-217ENST00000491659 CABIN1Q9Y6J0 2220 aa15.27■□□□□ 0.03
USP39-217ENST00000491659 IGLON5A6NGN9 336 aa15.26■□□□□ 0.03
USP39-217ENST00000491659 GOLGA8CPA6NN73 597 aa15.26■□□□□ 0.03
USP39-217ENST00000491659 FPGTO14772 594 aa15.26■□□□□ 0.03
USP39-217ENST00000491659 AREL1O15033 823 aa15.26■□□□□ 0.03
USP39-217ENST00000491659 TNFSF14O43557 240 aa15.26■□□□□ 0.03
USP39-217ENST00000491659 PAK4O96013 591 aaPredicted RBP15.26■□□□□ 0.03
USP39-217ENST00000491659 SERPINA4P29622 427 aa15.26■□□□□ 0.03
USP39-217ENST00000491659 SUOXP51687 545 aa15.26■□□□□ 0.03
USP39-217ENST00000491659 CDH6P55285 790 aa15.26■□□□□ 0.03
USP39-217ENST00000491659 CLDN2P57739 230 aa15.26■□□□□ 0.03
USP39-217ENST00000491659 ELP6Q0PNE2 266 aa15.26■□□□□ 0.03
USP39-217ENST00000491659 TMCO4Q5TGY1 634 aa15.26■□□□□ 0.03
USP39-217ENST00000491659 KYAT3Q6YP21 454 aaKnown RBP15.26■□□□□ 0.03
USP39-217ENST00000491659 ARHGAP36Q6ZRI8 547 aa15.26■□□□□ 0.03
USP39-217ENST00000491659 RAB44Q7Z6P3 723 aaPredicted RBP15.26■□□□□ 0.03
USP39-217ENST00000491659 ABI3BPQ7Z7G0 1075 aa15.26■□□□□ 0.03
USP39-217ENST00000491659 SRLQ86TD4 932 aa15.26■□□□□ 0.03
USP39-217ENST00000491659 CHCHD4Q8N4Q1 142 aa15.26■□□□□ 0.03
USP39-217ENST00000491659 ATPAF2Q8N5M1 289 aa15.26■□□□□ 0.03
USP39-217ENST00000491659 DENND6BQ8NEG7 585 aa15.26■□□□□ 0.03
USP39-217ENST00000491659 OR13H1Q8NG92 308 aa15.26■□□□□ 0.03
USP39-217ENST00000491659 HCAR2Q8TDS4 363 aa15.26■□□□□ 0.03
USP39-217ENST00000491659 ZNF599Q96NL3 588 aa15.26■□□□□ 0.03
USP39-217ENST00000491659 PACSIN1Q9BY11 444 aa15.26■□□□□ 0.03
USP39-217ENST00000491659 SUV39H2Q9H5I1 410 aa15.26■□□□□ 0.03
USP39-217ENST00000491659 ATP13A3Q9H7F0 1226 aa15.26■□□□□ 0.03
USP39-217ENST00000491659 RCOR3Q9P2K3 495 aaPredicted RBP15.26■□□□□ 0.03
USP39-217ENST00000491659 IPO11Q9UI26 975 aaKnown RBP15.26■□□□□ 0.03
USP39-217ENST00000491659 KLK13Q9UKR3 277 aa15.26■□□□□ 0.03
USP39-217ENST00000491659 HS3ST3A1Q9Y663 406 aa15.26■□□□□ 0.03
USP39-217ENST00000491659 LRRK1Q38SD2 2015 aa15.26■□□□□ 0.03
USP39-217ENST00000491659 TSPAN11A1L157 253 aa15.25■□□□□ 0.03
USP39-217ENST00000491659 SPINT1O43278 529 aa15.25■□□□□ 0.03
USP39-217ENST00000491659 PROSCO94903 275 aa15.25■□□□□ 0.03
USP39-217ENST00000491659 ATXN1LP0C7T5 689 aaKnown RBP15.25■□□□□ 0.03
USP39-217ENST00000491659 TMEM253P0C7T8 217 aa15.25■□□□□ 0.03
USP39-217ENST00000491659 CSNK1DP48730 415 aa15.25■□□□□ 0.03
USP39-217ENST00000491659 RENBPP51606 427 aa15.25■□□□□ 0.03
USP39-217ENST00000491659 ADKP55263 362 aaKnown RBP15.25■□□□□ 0.03
USP39-217ENST00000491659 FGL2Q14314 439 aa15.25■□□□□ 0.03
USP39-217ENST00000491659 ZNF235Q14590 738 aa15.25■□□□□ 0.03
USP39-217ENST00000491659 ASTE1Q2TB18 679 aaPredicted RBP15.25■□□□□ 0.03
USP39-217ENST00000491659 SLCO6A1Q86UG4 719 aa15.25■□□□□ 0.03
USP39-217ENST00000491659 DCP2Q8IU60 420 aaKnown RBP15.25■□□□□ 0.03
USP39-217ENST00000491659 BBS5Q8N3I7 341 aa15.25■□□□□ 0.03
USP39-217ENST00000491659 PAF1Q8N7H5 531 aa15.25■□□□□ 0.03
USP39-217ENST00000491659 PNPLA1Q8N8W4 532 aa15.25■□□□□ 0.03
USP39-217ENST00000491659 TSEN2Q8NCE0 465 aaKnown RBP15.25■□□□□ 0.03
USP39-217ENST00000491659 NSMCE1Q8WV22 266 aa15.25■□□□□ 0.03
USP39-217ENST00000491659 ASB12Q8WXK4 309 aa15.25■□□□□ 0.03
USP39-217ENST00000491659 CNDP2Q96KP4 475 aaKnown RBP15.25■□□□□ 0.03
USP39-217ENST00000491659 CCDC42Q96M95 316 aa15.25■□□□□ 0.03
USP39-217ENST00000491659 ZNF641Q96N77 438 aaPredicted RBP15.25■□□□□ 0.03
USP39-217ENST00000491659 LENG8Q96PV6 779 aaPredicted RBP15.25■□□□□ 0.03
USP39-217ENST00000491659 C1QTNF7Q9BXJ2 289 aa15.25■□□□□ 0.03
USP39-217ENST00000491659 C1QTNF2Q9BXJ5 285 aa15.25■□□□□ 0.03
USP39-217ENST00000491659 SEPT3Q9UH03 358 aa15.25■□□□□ 0.03
USP39-217ENST00000491659 PTPRBP23467 1997 aa15.25■□□□□ 0.03
USP39-217ENST00000491659 SDC3O75056 442 aa15.24■□□□□ 0.03
USP39-217ENST00000491659 TM7SF2O76062 418 aa15.24■□□□□ 0.03
USP39-217ENST00000491659 LDOC1O95751 146 aaPredicted RBP15.24■□□□□ 0.03
USP39-217ENST00000491659 TIMP2P16035 220 aa15.24■□□□□ 0.03
USP39-217ENST00000491659 MAN1A1P33908 653 aa15.24■□□□□ 0.03
USP39-217ENST00000491659 HSPA9P38646 679 aaKnown RBP15.24■□□□□ 0.03
USP39-217ENST00000491659 RABIFP47224 123 aa15.24■□□□□ 0.03
USP39-217ENST00000491659 RGRP47804 291 aa15.24■□□□□ 0.03
USP39-217ENST00000491659 AP1S1P61966 158 aa15.24■□□□□ 0.03
USP39-217ENST00000491659 BNIP3Q12983 259 aa15.24■□□□□ 0.03
USP39-217ENST00000491659 LBRQ14739 615 aaKnown RBP15.24■□□□□ 0.03
USP39-217ENST00000491659 ZFYVE27Q5T4F4 411 aa15.24■□□□□ 0.03
USP39-217ENST00000491659 ERAP2Q6P179 960 aa15.24■□□□□ 0.03
USP39-217ENST00000491659 BRAT1Q6PJG6 821 aa15.24■□□□□ 0.03
USP39-217ENST00000491659 SARM1Q6SZW1 724 aa15.24■□□□□ 0.03
USP39-217ENST00000491659 UNQ6494/PRO21346Q6UXR6 183 aa15.24■□□□□ 0.03
USP39-217ENST00000491659 Q6ZSR6 202 aa15.24■□□□□ 0.03
USP39-217ENST00000491659 TP53INP2Q8IXH6 220 aa15.24■□□□□ 0.03
USP39-217ENST00000491659 SLC22A18ASQ8N1D0 253 aa15.24■□□□□ 0.03
USP39-217ENST00000491659 EID2Q8N6I1 236 aa15.24■□□□□ 0.03
USP39-217ENST00000491659 TSC1Q92574 1164 aa15.24■□□□□ 0.03
USP39-217ENST00000491659 WRAP53Q9BUR4 548 aaKnown RBP15.24■□□□□ 0.03
USP39-217ENST00000491659 TRIM5Q9C035 493 aa15.24■□□□□ 0.03
USP39-217ENST00000491659 NHEJ1Q9H9Q4 299 aaPredicted RBP15.24■□□□□ 0.03
USP39-217ENST00000491659 ETNK2Q9NVF9 386 aa15.24■□□□□ 0.03
USP39-217ENST00000491659 KLHL11Q9NVR0 708 aa15.24■□□□□ 0.03
USP39-217ENST00000491659 TOR4AQ9NXH8 423 aa15.24■□□□□ 0.03
USP39-217ENST00000491659 MSRB2Q9Y3D2 182 aa15.24■□□□□ 0.03
USP39-217ENST00000491659 ACACBO00763 2458 aa15.24■□□□□ 0.03
USP39-217ENST00000491659 CHD8Q9HCK8 2581 aa15.23■□□□□ 0.03
USP39-217ENST00000491659 POM121BA6NF01 834 aa15.23■□□□□ 0.03
USP39-217ENST00000491659 TMEM110-MUSTN1A8MSY1 372 aa15.23■□□□□ 0.03
USP39-217ENST00000491659 AKR1B15C9JRZ8 316 aaPredicted RBP15.23■□□□□ 0.03
USP39-217ENST00000491659 ENC1O14682 589 aa15.23■□□□□ 0.03
USP39-217ENST00000491659 RAD51BO15315 384 aa15.23■□□□□ 0.03
USP39-217ENST00000491659 MMP20O60882 483 aa15.23■□□□□ 0.03
USP39-217ENST00000491659 KRT7P08729 469 aa15.23■□□□□ 0.03
USP39-217ENST00000491659 BCL2L1Q07817 233 aa15.23■□□□□ 0.03
USP39-217ENST00000491659 NSUN2Q08J23 767 aaKnown RBP eCLIP15.23■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms