RNA–Protein interactions for RNA: ENST00000490398.5

COL9A3-214, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 4

Gene COL9A3, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-214ENST00000490398 MMP20O60882 483 aa18.33■□□□□ 0.52
COL9A3-214ENST00000490398 MTA2O94776 668 aa18.33■□□□□ 0.52
COL9A3-214ENST00000490398 BNIP3Q12983 259 aa18.33■□□□□ 0.52
COL9A3-214ENST00000490398 LBRQ14739 615 aaKnown RBP18.33■□□□□ 0.52
COL9A3-214ENST00000490398 ANKRD20A8PQ5CZ79 823 aa18.33■□□□□ 0.52
COL9A3-214ENST00000490398 FAM182AQ5T1J6 154 aa18.33■□□□□ 0.52
COL9A3-214ENST00000490398 OR13H1Q8NG92 308 aa18.33■□□□□ 0.52
COL9A3-214ENST00000490398 BAHD1Q8TBE0 780 aaPredicted RBP18.33■□□□□ 0.52
COL9A3-214ENST00000490398 MRFAP1L1Q96HT8 127 aa18.33■□□□□ 0.52
COL9A3-214ENST00000490398 BMFQ96LC9 184 aa18.33■□□□□ 0.52
COL9A3-214ENST00000490398 KLF6Q99612 283 aaPredicted RBP18.33■□□□□ 0.52
COL9A3-214ENST00000490398 CINPQ9BW66 212 aaPredicted RBP18.33■□□□□ 0.52
COL9A3-214ENST00000490398 CALN1Q9BXU9 219 aa18.33■□□□□ 0.52
COL9A3-214ENST00000490398 CPEB1Q9BZB8 566 aaKnown RBP18.33■□□□□ 0.52
COL9A3-214ENST00000490398 SUV39H2Q9H5I1 410 aa18.33■□□□□ 0.52
COL9A3-214ENST00000490398 GDF3Q9NR23 364 aa18.33■□□□□ 0.52
COL9A3-214ENST00000490398 PCDHGB2Q9Y5G2 931 aa18.33■□□□□ 0.52
COL9A3-214ENST00000490398 TSPAN11A1L157 253 aa18.32■□□□□ 0.52
COL9A3-214ENST00000490398 POM121BA6NF01 834 aa18.32■□□□□ 0.52
COL9A3-214ENST00000490398 THEGLP0DJG4 465 aa18.32■□□□□ 0.52
COL9A3-214ENST00000490398 HNRNPA2B1P22626 353 aaKnown RBP18.32■□□□□ 0.52
COL9A3-214ENST00000490398 MAN1A1P33908 653 aa18.32■□□□□ 0.52
COL9A3-214ENST00000490398 NUDT1P36639 197 aa18.32■□□□□ 0.52
COL9A3-214ENST00000490398 MAGEA1P43355 309 aa18.32■□□□□ 0.52
COL9A3-214ENST00000490398 CCT8P50990 548 aa18.32■□□□□ 0.52
COL9A3-214ENST00000490398 RPS21P63220 83 aaKnown RBP18.32■□□□□ 0.52
COL9A3-214ENST00000490398 RAD51Q06609 339 aa18.32■□□□□ 0.52
COL9A3-214ENST00000490398 FOXC1Q12948 553 aa18.32■□□□□ 0.52
COL9A3-214ENST00000490398 TRIP6Q15654 476 aaKnown RBP18.32■□□□□ 0.52
COL9A3-214ENST00000490398 TPRG1LQ5T0D9 272 aa18.32■□□□□ 0.52
COL9A3-214ENST00000490398 KIAA1161Q6NSJ0 714 aa18.32■□□□□ 0.52
COL9A3-214ENST00000490398 SLC22A18ASQ8N1D0 253 aa18.32■□□□□ 0.52
COL9A3-214ENST00000490398 KCTD6Q8NC69 237 aa18.32■□□□□ 0.52
COL9A3-214ENST00000490398 RFFLQ8WZ73 363 aa18.32■□□□□ 0.52
COL9A3-214ENST00000490398 FAF2Q96CS3 445 aa18.32■□□□□ 0.52
COL9A3-214ENST00000490398 FEM1CQ96JP0 617 aa18.32■□□□□ 0.52
COL9A3-214ENST00000490398 WRAP53Q9BUR4 548 aaKnown RBP18.32■□□□□ 0.52
COL9A3-214ENST00000490398 C1QTNF2Q9BXJ5 285 aa18.32■□□□□ 0.52
COL9A3-214ENST00000490398 GOLPH3Q9H4A6 298 aa18.32■□□□□ 0.52
COL9A3-214ENST00000490398 RCOR3Q9P2K3 495 aaPredicted RBP18.32■□□□□ 0.52
COL9A3-214ENST00000490398 DKK3Q9UBP4 350 aa18.32■□□□□ 0.52
COL9A3-214ENST00000490398 AKAP13Q12802 2813 aa18.32■□□□□ 0.52
COL9A3-214ENST00000490398 NEMP1O14524 444 aa18.31■□□□□ 0.52
COL9A3-214ENST00000490398 TSPAN6O43657 245 aa18.31■□□□□ 0.52
COL9A3-214ENST00000490398 CSNK1DP48730 415 aa18.31■□□□□ 0.52
COL9A3-214ENST00000490398 SCNN1BP51168 640 aa18.31■□□□□ 0.52
COL9A3-214ENST00000490398 MAXP61244 160 aa18.31■□□□□ 0.52
COL9A3-214ENST00000490398 GBE1Q04446 702 aa18.31■□□□□ 0.52
COL9A3-214ENST00000490398 SLC10A2Q12908 348 aaPredicted RBP18.31■□□□□ 0.52
COL9A3-214ENST00000490398 PAFAH1B3Q15102 231 aaKnown RBP18.31■□□□□ 0.52
COL9A3-214ENST00000490398 TMCO4Q5TGY1 634 aa18.31■□□□□ 0.52
COL9A3-214ENST00000490398 IQCHQ86VS3 1027 aa18.31■□□□□ 0.52
COL9A3-214ENST00000490398 PNPLA1Q8N8W4 532 aa18.31■□□□□ 0.52
COL9A3-214ENST00000490398 RHBDD1Q8TEB9 315 aa18.31■□□□□ 0.52
COL9A3-214ENST00000490398 SAP25Q8TEE9 199 aa18.31■□□□□ 0.52
COL9A3-214ENST00000490398 RAB7BQ96AH8 199 aa18.31■□□□□ 0.52
COL9A3-214ENST00000490398 KLHDC7BQ96G42 594 aa18.31■□□□□ 0.52
COL9A3-214ENST00000490398 PSKH2Q96QS6 385 aa18.31■□□□□ 0.52
COL9A3-214ENST00000490398 PCDH12Q9NPG4 1184 aa18.31■□□□□ 0.52
COL9A3-214ENST00000490398 COQ6Q9Y2Z9 468 aa18.31■□□□□ 0.52
COL9A3-214ENST00000490398 PCNX2A6NKB5 2137 aa18.31■□□□□ 0.52
COL9A3-214ENST00000490398 CHD8Q9HCK8 2581 aa18.31■□□□□ 0.52
COL9A3-214ENST00000490398 SOWAHDA6NJG2 315 aa18.3■□□□□ 0.52
COL9A3-214ENST00000490398 C3orf70A6NLC5 250 aaPredicted RBP18.3■□□□□ 0.52
COL9A3-214ENST00000490398 PCDHGA12O60330 932 aa18.3■□□□□ 0.52
COL9A3-214ENST00000490398 SDC3O75056 442 aa18.3■□□□□ 0.52
COL9A3-214ENST00000490398 LCA5LO95447 670 aa18.3■□□□□ 0.52
COL9A3-214ENST00000490398 KRT7P08729 469 aa18.3■□□□□ 0.52
COL9A3-214ENST00000490398 CR2P20023 1033 aa18.3■□□□□ 0.52
COL9A3-214ENST00000490398 KDELR1P24390 212 aa18.3■□□□□ 0.52
COL9A3-214ENST00000490398 EPHA8P29322 1005 aaPredicted RBP18.3■□□□□ 0.52
COL9A3-214ENST00000490398 AKT2P31751 481 aa18.3■□□□□ 0.52
COL9A3-214ENST00000490398 RFTN1Q14699 578 aaPredicted RBP18.3■□□□□ 0.52
COL9A3-214ENST00000490398 TCEAL1Q15170 157 aa18.3■□□□□ 0.52
COL9A3-214ENST00000490398 SLC45A4Q5BKX6 768 aa18.3■□□□□ 0.52
COL9A3-214ENST00000490398 KANSL1Q7Z3B3 1105 aa18.3■□□□□ 0.52
COL9A3-214ENST00000490398 ABI3BPQ7Z7G0 1075 aa18.3■□□□□ 0.52
COL9A3-214ENST00000490398 SLCO6A1Q86UG4 719 aa18.3■□□□□ 0.52
COL9A3-214ENST00000490398 RHOT2Q8IXI1 618 aa18.3■□□□□ 0.52
COL9A3-214ENST00000490398 ATPAF2Q8N5M1 289 aa18.3■□□□□ 0.52
COL9A3-214ENST00000490398 SKA1Q96BD8 255 aa18.3■□□□□ 0.52
COL9A3-214ENST00000490398 ZNF599Q96NL3 588 aa18.3■□□□□ 0.52
COL9A3-214ENST00000490398 ZNF670Q9BS34 389 aa18.3■□□□□ 0.52
COL9A3-214ENST00000490398 MBNL1Q9NR56 388 aaKnown RBP18.3■□□□□ 0.52
COL9A3-214ENST00000490398 TOR4AQ9NXH8 423 aa18.3■□□□□ 0.52
COL9A3-214ENST00000490398 SEPT3Q9UH03 358 aa18.3■□□□□ 0.52
COL9A3-214ENST00000490398 CABIN1Q9Y6J0 2220 aa18.3■□□□□ 0.52
COL9A3-214ENST00000490398 RCCD1A6NED2 376 aa18.29■□□□□ 0.52
COL9A3-214ENST00000490398 TRAFD1O14545 582 aaPredicted RBP18.29■□□□□ 0.52
COL9A3-214ENST00000490398 FLRT2O43155 660 aa18.29■□□□□ 0.52
COL9A3-214ENST00000490398 ATXN1LP0C7T5 689 aaKnown RBP18.29■□□□□ 0.52
COL9A3-214ENST00000490398 TNNT1P13805 278 aa18.29■□□□□ 0.52
COL9A3-214ENST00000490398 SERPINB6P35237 376 aa18.29■□□□□ 0.52
COL9A3-214ENST00000490398 ARHGAP25P42331 645 aa18.29■□□□□ 0.52
COL9A3-214ENST00000490398 NSUN2Q08J23 767 aaKnown RBP eCLIP18.29■□□□□ 0.52
COL9A3-214ENST00000490398 GALNT2Q10471 571 aa18.29■□□□□ 0.52
COL9A3-214ENST00000490398 IHHQ14623 411 aa18.29■□□□□ 0.52
COL9A3-214ENST00000490398 PDK2Q15119 407 aa18.29■□□□□ 0.52
COL9A3-214ENST00000490398 UGP2Q16851 508 aa18.29■□□□□ 0.52
COL9A3-214ENST00000490398 TMEM52BQ4KMG9 183 aa18.29■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms