RNA–Protein interactions for RNA: ENST00000488520.5

USP4-213, Transcript of ubiquitin specific peptidase 4, human

TSL 3

Gene USP4, Length 1,155 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
USP4-213	ENST00000488520	FCRL3	Q96P31	734 aa	Predicted RBP	8.94	□□□□□ -0.98
USP4-213	ENST00000488520	PPP1R9B	Q96SB3	815 aa		8.94	□□□□□ -0.98
USP4-213	ENST00000488520	NPY6R	Q99463	290 aa		8.94	□□□□□ -0.98
USP4-213	ENST00000488520	MDFI	Q99750	246 aa		8.94	□□□□□ -0.98
USP4-213	ENST00000488520	PACSIN1	Q9BY11	444 aa		8.94	□□□□□ -0.98
USP4-213	ENST00000488520	SLC2A11	Q9BYW1	496 aa		8.94	□□□□□ -0.98
USP4-213	ENST00000488520	TKTL2	Q9H0I9	626 aa		8.94	□□□□□ -0.98
USP4-213	ENST00000488520	PCED1A	Q9H1Q7	454 aa		8.94	□□□□□ -0.98
USP4-213	ENST00000488520	TMEM245	Q9H330	911 aa		8.94	□□□□□ -0.98
USP4-213	ENST00000488520	PRSS16	Q9NQE7	514 aa		8.94	□□□□□ -0.98
USP4-213	ENST00000488520	ABCB8	Q9NUT2	735 aa		8.94	□□□□□ -0.98
USP4-213	ENST00000488520	STIM2	Q9P246	746 aa		8.94	□□□□□ -0.98
USP4-213	ENST00000488520	PLA2G4C	Q9UP65	541 aa		8.94	□□□□□ -0.98
USP4-213	ENST00000488520	ZNF462	Q96JM2	2506 aa		8.93	□□□□□ -0.98
USP4-213	ENST00000488520	MYO18B	Q8IUG5	2567 aa		8.93	□□□□□ -0.98
USP4-213	ENST00000488520		A0A0A6YYK5	440 aa	Predicted RBP	8.93	□□□□□ -0.98
USP4-213	ENST00000488520		A0A1B0GTQ1	180 aa		8.93	□□□□□ -0.98
USP4-213	ENST00000488520	ADARB2-AS1	A8MUL3	147 aa		8.93	□□□□□ -0.98
USP4-213	ENST00000488520	KCNU1	A8MYU2	1149 aa		8.93	□□□□□ -0.98
USP4-213	ENST00000488520	IRAK2	O43187	625 aa		8.93	□□□□□ -0.98
USP4-213	ENST00000488520	DAPK3	O43293	454 aa		8.93	□□□□□ -0.98
USP4-213	ENST00000488520	MSI1	O43347	362 aa	Known RBP	8.93	□□□□□ -0.98
USP4-213	ENST00000488520	ACSL4	O60488	711 aa		8.93	□□□□□ -0.98
USP4-213	ENST00000488520	ENDOD1	O94919	500 aa		8.93	□□□□□ -0.98
USP4-213	ENST00000488520	LATS1	O95835	1130 aa		8.93	□□□□□ -0.98
USP4-213	ENST00000488520	WNT1	P04628	370 aa		8.93	□□□□□ -0.98
USP4-213	ENST00000488520	IGHV4-34	P06331	123 aa		8.93	□□□□□ -0.98
USP4-213	ENST00000488520	ITGAV	P06756	1048 aa		8.93	□□□□□ -0.98
USP4-213	ENST00000488520	EPB42	P16452	691 aa		8.93	□□□□□ -0.98
USP4-213	ENST00000488520	ALAS2	P22557	587 aa		8.93	□□□□□ -0.98
USP4-213	ENST00000488520	HNF1B	P35680	557 aa		8.93	□□□□□ -0.98
USP4-213	ENST00000488520	SLC1A1	P43005	524 aa		8.93	□□□□□ -0.98
USP4-213	ENST00000488520	SGSH	P51688	502 aa		8.93	□□□□□ -0.98
USP4-213	ENST00000488520	AIF1	P55008	147 aa		8.93	□□□□□ -0.98
USP4-213	ENST00000488520	TARDBP	Q13148	414 aa	Known RBP eCLIP	8.93	□□□□□ -0.98
USP4-213	ENST00000488520	OCLN	Q16625	522 aa		8.93	□□□□□ -0.98
USP4-213	ENST00000488520	C15orf59	Q2T9L4	293 aa	Predicted RBP	8.93	□□□□□ -0.98
USP4-213	ENST00000488520	C11orf91	Q3C1V1	193 aa		8.93	□□□□□ -0.98
USP4-213	ENST00000488520	INAVA	Q3KP66	663 aa		8.93	□□□□□ -0.98
USP4-213	ENST00000488520	TTC31	Q49AM3	519 aa	Predicted RBP	8.93	□□□□□ -0.98
USP4-213	ENST00000488520	BOLA3	Q53S33	107 aa		8.93	□□□□□ -0.98
USP4-213	ENST00000488520	ADGRF1	Q5T601	910 aa		8.93	□□□□□ -0.98
USP4-213	ENST00000488520	HES3	Q5TGS1	186 aa		8.93	□□□□□ -0.98
USP4-213	ENST00000488520	MBLAC2	Q68D91	279 aa		8.93	□□□□□ -0.98
USP4-213	ENST00000488520	KIAA0895L	Q68EN5	471 aa		8.93	□□□□□ -0.98
USP4-213	ENST00000488520	SLFN11	Q7Z7L1	901 aa		8.93	□□□□□ -0.98
USP4-213	ENST00000488520	ZNF605	Q86T29	641 aa		8.93	□□□□□ -0.98
USP4-213	ENST00000488520	TAC4	Q86UU9	113 aa		8.93	□□□□□ -0.98
USP4-213	ENST00000488520	ADIPOR2	Q86V24	386 aa		8.93	□□□□□ -0.98
USP4-213	ENST00000488520	SYCE1	Q8N0S2	351 aa		8.93	□□□□□ -0.98
USP4-213	ENST00000488520	EID2	Q8N6I1	236 aa		8.93	□□□□□ -0.98
USP4-213	ENST00000488520	ACRBP	Q8NEB7	543 aa		8.93	□□□□□ -0.98
USP4-213	ENST00000488520	WFDC5	Q8TCV5	224 aa		8.93	□□□□□ -0.98
USP4-213	ENST00000488520	FNIP1	Q8TF40	1166 aa		8.93	□□□□□ -0.98
USP4-213	ENST00000488520	NXPE2	Q96DL1	559 aa		8.93	□□□□□ -0.98
USP4-213	ENST00000488520	ARHGEF26	Q96DR7	871 aa		8.93	□□□□□ -0.98
USP4-213	ENST00000488520	TMA16	Q96EY4	203 aa	Known RBP	8.93	□□□□□ -0.98
USP4-213	ENST00000488520	PGAP3	Q96FM1	320 aa	Predicted RBP	8.93	□□□□□ -0.98
USP4-213	ENST00000488520	BTN2A3P	Q96KV6	586 aa		8.93	□□□□□ -0.98
USP4-213	ENST00000488520	ORAI3	Q9BRQ5	295 aa		8.93	□□□□□ -0.98
USP4-213	ENST00000488520	DESI2	Q9BSY9	194 aa		8.93	□□□□□ -0.98
USP4-213	ENST00000488520	ACE2	Q9BYF1	805 aa	Predicted RBP	8.93	□□□□□ -0.98
USP4-213	ENST00000488520	SIK2	Q9H0K1	926 aa		8.93	□□□□□ -0.98
USP4-213	ENST00000488520	PRORY	Q9H606	182 aa		8.93	□□□□□ -0.98
USP4-213	ENST00000488520	OSGEP	Q9NPF4	335 aa		8.93	□□□□□ -0.98
USP4-213	ENST00000488520	AASDHPPT	Q9NRN7	309 aa		8.93	□□□□□ -0.98
USP4-213	ENST00000488520	PCSK1N	Q9UHG2	260 aa		8.93	□□□□□ -0.98
USP4-213	ENST00000488520	GGA2	Q9UJY4	613 aa		8.93	□□□□□ -0.98
USP4-213	ENST00000488520	GUCA1B	Q9UMX6	200 aa		8.93	□□□□□ -0.98
USP4-213	ENST00000488520	NCKAP1	Q9Y2A7	1128 aa		8.93	□□□□□ -0.98
USP4-213	ENST00000488520	SBDS	Q9Y3A5	250 aa	Known RBP eCLIP	8.93	□□□□□ -0.98
USP4-213	ENST00000488520	NAV2	Q8IVL1	2488 aa		8.93	□□□□□ -0.98
USP4-213	ENST00000488520	DOCK4	Q8N1I0	1966 aa		8.92	□□□□□ -0.98
USP4-213	ENST00000488520	MACROD2	A1Z1Q3	448 aa		8.92	□□□□□ -0.98
USP4-213	ENST00000488520		E9PAM4	449 aa		8.92	□□□□□ -0.98
USP4-213	ENST00000488520		F5H5T6	163 aa		8.92	□□□□□ -0.98
USP4-213	ENST00000488520	GNB5	O14775	395 aa		8.92	□□□□□ -0.98
USP4-213	ENST00000488520	WNT9A	O14904	365 aa		8.92	□□□□□ -0.98
USP4-213	ENST00000488520	VILL	O15195	856 aa		8.92	□□□□□ -0.98
USP4-213	ENST00000488520	RRP8	O43159	456 aa	Known RBP	8.92	□□□□□ -0.98
USP4-213	ENST00000488520	PJA2	O43164	708 aa		8.92	□□□□□ -0.98
USP4-213	ENST00000488520	BUB1	O43683	1085 aa		8.92	□□□□□ -0.98
USP4-213	ENST00000488520	SPOP	O43791	374 aa		8.92	□□□□□ -0.98
USP4-213	ENST00000488520	SRGAP2	O75044	1071 aa		8.92	□□□□□ -0.98
USP4-213	ENST00000488520	RFPL3	O75679	317 aa		8.92	□□□□□ -0.98
USP4-213	ENST00000488520	PABPC1	P11940	636 aa	Known RBP	8.92	□□□□□ -0.98
USP4-213	ENST00000488520	PLA2G2A	P14555	144 aa		8.92	□□□□□ -0.98
USP4-213	ENST00000488520	POLR2E	P19388	210 aa	Known RBP	8.92	□□□□□ -0.98
USP4-213	ENST00000488520	MSN	P26038	577 aa	Known RBP	8.92	□□□□□ -0.98
USP4-213	ENST00000488520	CD70	P32970	193 aa		8.92	□□□□□ -0.98
USP4-213	ENST00000488520	ADRA1B	P35368	520 aa		8.92	□□□□□ -0.98
USP4-213	ENST00000488520	PCK1	P35558	622 aa		8.92	□□□□□ -0.98
USP4-213	ENST00000488520	CETN2	P41208	172 aa		8.92	□□□□□ -0.98
USP4-213	ENST00000488520	CXCR3	P49682	368 aa		8.92	□□□□□ -0.98
USP4-213	ENST00000488520	IDH3A	P50213	366 aa		8.92	□□□□□ -0.98
USP4-213	ENST00000488520	BNIP3	Q12983	259 aa		8.92	□□□□□ -0.98
USP4-213	ENST00000488520	RABGAP1L	Q5R372	815 aa		8.92	□□□□□ -0.98
USP4-213	ENST00000488520	ERMARD	Q5T6L9	678 aa		8.92	□□□□□ -0.98
USP4-213	ENST00000488520	RFWD3	Q6PCD5	774 aa		8.92	□□□□□ -0.98
USP4-213	ENST00000488520	NCEH1	Q6PIU2	408 aa		8.92	□□□□□ -0.98

Retrieved 100 of 20,778 RNA–protein pairs in 18 ms