RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 ABCC13Q9NSE7 274 aa18.12■□□□□ 0.49
VIM-206ENST00000487938 IGSF5Q9NSI5 407 aa18.12■□□□□ 0.49
VIM-206ENST00000487938 NCKIPSDQ9NZQ3 722 aa18.12■□□□□ 0.49
VIM-206ENST00000487938 TLL2Q9Y6L7 1015 aa18.12■□□□□ 0.49
VIM-206ENST00000487938 ITGB1P05556 798 aa18.11■□□□□ 0.49
VIM-206ENST00000487938 CPB1P15086 417 aa18.11■□□□□ 0.49
VIM-206ENST00000487938 PAMP19021 973 aa18.11■□□□□ 0.49
VIM-206ENST00000487938 SLC5A3P53794 718 aa18.11■□□□□ 0.49
VIM-206ENST00000487938 TLR1Q15399 786 aa18.11■□□□□ 0.49
VIM-206ENST00000487938 CNPY1Q3B7I2 92 aa18.11■□□□□ 0.49
VIM-206ENST00000487938 CWF19L1Q69YN2 538 aaKnown RBP18.11■□□□□ 0.49
VIM-206ENST00000487938 CD300LGQ6UXG3 332 aa18.11■□□□□ 0.49
VIM-206ENST00000487938 PKMYT1Q99640 499 aa18.11■□□□□ 0.49
VIM-206ENST00000487938 TRIM4Q9C037 500 aa18.11■□□□□ 0.49
VIM-206ENST00000487938 C6orf203Q9P0P8 240 aaPredicted RBP18.11■□□□□ 0.49
VIM-206ENST00000487938 TTC24A2A3L6 582 aaPredicted RBP18.11■□□□□ 0.49
VIM-206ENST00000487938 E9PAM4 449 aa18.11■□□□□ 0.49
VIM-206ENST00000487938 SLC22A2O15244 555 aa18.11■□□□□ 0.49
VIM-206ENST00000487938 NPHS1O60500 1241 aa18.11■□□□□ 0.49
VIM-206ENST00000487938 MGEA5O60502 916 aa18.11■□□□□ 0.49
VIM-206ENST00000487938 ME2P23368 584 aa18.11■□□□□ 0.49
VIM-206ENST00000487938 GSTT1P30711 240 aa18.11■□□□□ 0.49
VIM-206ENST00000487938 POLD2P49005 469 aa18.11■□□□□ 0.49
VIM-206ENST00000487938 WNT3AP56704 352 aa18.11■□□□□ 0.49
VIM-206ENST00000487938 MAXP61244 160 aa18.11■□□□□ 0.49
VIM-206ENST00000487938 ITKQ08881 620 aa18.11■□□□□ 0.49
VIM-206ENST00000487938 GNASQ5JWF2 1037 aa18.11■□□□□ 0.49
VIM-206ENST00000487938 MANEALQ5VSG8 457 aa18.11■□□□□ 0.49
VIM-206ENST00000487938 LZTR1Q8N653 840 aa18.11■□□□□ 0.49
VIM-206ENST00000487938 PCDH20Q8N6Y1 951 aaKnown RBP18.11■□□□□ 0.49
VIM-206ENST00000487938 NMUR1Q9HB89 426 aa18.11■□□□□ 0.49
VIM-206ENST00000487938 HS3ST4Q9Y661 456 aa18.11■□□□□ 0.49
VIM-206ENST00000487938 A0A087X1B8 175 aa18.1■□□□□ 0.49
VIM-206ENST00000487938 KCNU1A8MYU2 1149 aa18.1■□□□□ 0.49
VIM-206ENST00000487938 CCL22O00626 93 aa18.1■□□□□ 0.49
VIM-206ENST00000487938 FGF10O15520 208 aaPredicted RBP18.1■□□□□ 0.49
VIM-206ENST00000487938 OR4Q2P0C623 313 aa18.1■□□□□ 0.49
VIM-206ENST00000487938 ATP5F1P24539 256 aaPredicted RBP18.1■□□□□ 0.49
VIM-206ENST00000487938 BRMS1LQ5PSV4 323 aa18.1■□□□□ 0.49
VIM-206ENST00000487938 OVOS1Q6IE37 1185 aa18.1■□□□□ 0.49
VIM-206ENST00000487938 UGT2A3Q6UWM9 527 aa18.1■□□□□ 0.49
VIM-206ENST00000487938 SCD5Q86SK9 330 aa18.1■□□□□ 0.49
VIM-206ENST00000487938 LDB1Q86U70 411 aaPredicted RBP18.1■□□□□ 0.49
VIM-206ENST00000487938 LILRA2Q8N149 483 aa18.1■□□□□ 0.49
VIM-206ENST00000487938 CEP70Q8NHQ1 597 aa18.1■□□□□ 0.49
VIM-206ENST00000487938 PHF21BQ96EK2 531 aa18.1■□□□□ 0.49
VIM-206ENST00000487938 CENPKQ9BS16 269 aa18.1■□□□□ 0.49
VIM-206ENST00000487938 SPATA16Q9BXB7 569 aa18.1■□□□□ 0.49
VIM-206ENST00000487938 CLIC5Q9NZA1 410 aa18.1■□□□□ 0.49
VIM-206ENST00000487938 IPO11Q9UI26 975 aaKnown RBP18.1■□□□□ 0.49
VIM-206ENST00000487938 PCDHGB4Q9UN71 923 aa18.1■□□□□ 0.49
VIM-206ENST00000487938 PCDHGB5Q9Y5G0 923 aa18.1■□□□□ 0.49
VIM-206ENST00000487938 DNAJB1P25685 340 aa18.1■□□□□ 0.49
VIM-206ENST00000487938 ADSLP30566 484 aaPredicted RBP18.1■□□□□ 0.49
VIM-206ENST00000487938 CD52P31358 61 aa18.1■□□□□ 0.49
VIM-206ENST00000487938 CHN2P52757 468 aa18.1■□□□□ 0.49
VIM-206ENST00000487938 POU4F1Q01851 419 aa18.1■□□□□ 0.49
VIM-206ENST00000487938 ROR2Q01974 943 aaKnown RBP18.1■□□□□ 0.49
VIM-206ENST00000487938 IRF5Q13568 498 aa18.1■□□□□ 0.49
VIM-206ENST00000487938 KIAA0930Q6ICG6 404 aaPredicted RBP18.1■□□□□ 0.49
VIM-206ENST00000487938 SNX31Q8N9S9 440 aa18.1■□□□□ 0.49
VIM-206ENST00000487938 SPPL2BQ8TCT7 592 aa18.1■□□□□ 0.49
VIM-206ENST00000487938 BTBD9Q96Q07 612 aa18.1■□□□□ 0.49
VIM-206ENST00000487938 SENP6Q9GZR1 1112 aaPredicted RBP18.1■□□□□ 0.49
VIM-206ENST00000487938 ADA2Q9NZK5 511 aa18.1■□□□□ 0.49
VIM-206ENST00000487938 VPS28Q9UK41 221 aa18.1■□□□□ 0.49
VIM-206ENST00000487938 TRPC5OSA6NMA1 111 aa18.09■□□□□ 0.49
VIM-206ENST00000487938 TADA2AO75478 443 aa18.09■□□□□ 0.49
VIM-206ENST00000487938 CCDC166P0CW27 439 aa18.09■□□□□ 0.49
VIM-206ENST00000487938 HDCP19113 662 aa18.09■□□□□ 0.49
VIM-206ENST00000487938 HOXC13P31276 330 aa18.09■□□□□ 0.49
VIM-206ENST00000487938 SULT2A1Q06520 285 aa18.09■□□□□ 0.49
VIM-206ENST00000487938 CACNB2Q08289 660 aaPredicted RBP18.09■□□□□ 0.49
VIM-206ENST00000487938 ADGRE1Q14246 886 aa18.09■□□□□ 0.49
VIM-206ENST00000487938 GRM2Q14416 872 aa18.09■□□□□ 0.49
VIM-206ENST00000487938 HERC3Q15034 1050 aa18.09■□□□□ 0.49
VIM-206ENST00000487938 PPP1R3AQ16821 1122 aa18.09■□□□□ 0.49
VIM-206ENST00000487938 SDHAF4Q5VUM1 108 aa18.09■□□□□ 0.49
VIM-206ENST00000487938 PIWIL4Q7Z3Z4 852 aaKnown RBP18.09■□□□□ 0.49
VIM-206ENST00000487938 PTAR1Q7Z6K3 402 aaPredicted RBP18.09■□□□□ 0.49
VIM-206ENST00000487938 TFAP2DQ7Z6R9 452 aa18.09■□□□□ 0.49
VIM-206ENST00000487938 SPATA24Q86W54 205 aa18.09■□□□□ 0.49
VIM-206ENST00000487938 SCN4BQ8IWT1 228 aa18.09■□□□□ 0.49
VIM-206ENST00000487938 PTCD2Q8WV60 388 aaKnown RBP18.09■□□□□ 0.49
VIM-206ENST00000487938 MAELQ96JY0 434 aaKnown RBP18.09■□□□□ 0.49
VIM-206ENST00000487938 KLHL32Q96NJ5 620 aa18.09■□□□□ 0.49
VIM-206ENST00000487938 KLHL5Q96PQ7 755 aa18.09■□□□□ 0.49
VIM-206ENST00000487938 PKP2Q99959 881 aa18.09■□□□□ 0.49
VIM-206ENST00000487938 MRM3Q9HC36 420 aaKnown RBP18.09■□□□□ 0.49
VIM-206ENST00000487938 NT5MQ9NPB1 228 aa18.09■□□□□ 0.49
VIM-206ENST00000487938 NYNRINQ9P2P1 1898 aaKnown RBP18.09■□□□□ 0.49
VIM-206ENST00000487938 A0A1W2PQH9 124 aa18.09■□□□□ 0.49
VIM-206ENST00000487938 J3KR12 359 aa18.09■□□□□ 0.49
VIM-206ENST00000487938 DNAJA2O60884 412 aa18.09■□□□□ 0.49
VIM-206ENST00000487938 C1QTNF8P60827 252 aa18.09■□□□□ 0.49
VIM-206ENST00000487938 FAM83EQ2M2I3 478 aa18.09■□□□□ 0.49
VIM-206ENST00000487938 TIGD7Q6NT04 549 aaPredicted RBP18.09■□□□□ 0.49
VIM-206ENST00000487938 SPATA2LQ8IUW3 424 aaPredicted RBP18.09■□□□□ 0.49
VIM-206ENST00000487938 SCML4Q8N228 414 aa18.09■□□□□ 0.49
VIM-206ENST00000487938 ANKRD49Q8WVL7 239 aa18.09■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms