RNA–Protein interactions for RNA: ENST00000477052.1

VARS2-208, Transcript of valyl-tRNA synthetase 2, mitochondrial, humanhuman

TSL 3

Gene VARS2, Length 552 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS2-208ENST00000477052 FOXR1Q6PIV2 292 aa11.81□□□□□ -0.52
VARS2-208ENST00000477052 TRIM72Q6ZMU5 477 aa11.81□□□□□ -0.52
VARS2-208ENST00000477052 PHF13Q86YI8 300 aaPredicted RBP11.81□□□□□ -0.52
VARS2-208ENST00000477052 DCP2Q8IU60 420 aaKnown RBP11.81□□□□□ -0.52
VARS2-208ENST00000477052 SPACA3Q8IXA5 215 aa11.81□□□□□ -0.52
VARS2-208ENST00000477052 RTL3Q8N8U3 475 aaKnown RBP11.81□□□□□ -0.52
VARS2-208ENST00000477052 SNIP1Q8TAD8 396 aaKnown RBP11.81□□□□□ -0.52
VARS2-208ENST00000477052 IFT43Q96FT9 208 aa11.81□□□□□ -0.52
VARS2-208ENST00000477052 ATXN7L3BQ96GX2 97 aa11.81□□□□□ -0.52
VARS2-208ENST00000477052 GDAP1L1Q96MZ0 367 aa11.81□□□□□ -0.52
VARS2-208ENST00000477052 LENG8Q96PV6 779 aaPredicted RBP11.81□□□□□ -0.52
VARS2-208ENST00000477052 LGMNQ99538 433 aa11.81□□□□□ -0.52
VARS2-208ENST00000477052 EPAS1Q99814 870 aa11.81□□□□□ -0.52
VARS2-208ENST00000477052 AGPAT1Q99943 283 aa11.81□□□□□ -0.52
VARS2-208ENST00000477052 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP11.81□□□□□ -0.52
VARS2-208ENST00000477052 TTYH3Q9C0H2 523 aa11.81□□□□□ -0.52
VARS2-208ENST00000477052 CLPBQ9H078 707 aa11.81□□□□□ -0.52
VARS2-208ENST00000477052 SYNDIG1Q9H7V2 258 aa11.81□□□□□ -0.52
VARS2-208ENST00000477052 FZD10Q9ULW2 581 aa11.81□□□□□ -0.52
VARS2-208ENST00000477052 GCN1Q92616 2671 aaKnown RBP11.81□□□□□ -0.52
VARS2-208ENST00000477052 LGALS16A8MUM7 142 aa11.8□□□□□ -0.52
VARS2-208ENST00000477052 H3BM21 787 aa11.8□□□□□ -0.52
VARS2-208ENST00000477052 AGRPO00253 132 aa11.8□□□□□ -0.52
VARS2-208ENST00000477052 C1QL1O75973 258 aa11.8□□□□□ -0.52
VARS2-208ENST00000477052 IGSF6O95976 241 aa11.8□□□□□ -0.52
VARS2-208ENST00000477052 CALB1P05937 261 aa11.8□□□□□ -0.52
VARS2-208ENST00000477052 TPM2P07951 284 aa11.8□□□□□ -0.52
VARS2-208ENST00000477052 EIF4A3P38919 411 aaKnown RBP11.8□□□□□ -0.52
VARS2-208ENST00000477052 RGRP47804 291 aa11.8□□□□□ -0.52
VARS2-208ENST00000477052 ZNF143P52747 638 aaPredicted RBP11.8□□□□□ -0.52
VARS2-208ENST00000477052 THOP1P52888 689 aa11.8□□□□□ -0.52
VARS2-208ENST00000477052 SERINC3Q13530 473 aa11.8□□□□□ -0.52
VARS2-208ENST00000477052 IRF4Q15306 451 aa11.8□□□□□ -0.52
VARS2-208ENST00000477052 CA9Q16790 459 aa11.8□□□□□ -0.52
VARS2-208ENST00000477052 C3orf38Q5JPI3 329 aa11.8□□□□□ -0.52
VARS2-208ENST00000477052 CT47A1Q5JQC4 288 aaPredicted RBP11.8□□□□□ -0.52
VARS2-208ENST00000477052 FAXCQ5TGI0 409 aa11.8□□□□□ -0.52
VARS2-208ENST00000477052 ZCCHC8Q6NZY4 707 aaKnown RBP11.8□□□□□ -0.52
VARS2-208ENST00000477052 RD3Q7Z3Z2 195 aa11.8□□□□□ -0.52
VARS2-208ENST00000477052 ZSWIM9Q86XI8 627 aa11.8□□□□□ -0.52
VARS2-208ENST00000477052 PLPP6Q8IY26 295 aa11.8□□□□□ -0.52
VARS2-208ENST00000477052 SLC35F3Q8IY50 421 aa11.8□□□□□ -0.52
VARS2-208ENST00000477052 PHACTR4Q8IZ21 702 aa11.8□□□□□ -0.52
VARS2-208ENST00000477052 FAM181AQ8N9Y4 354 aa11.8□□□□□ -0.52
VARS2-208ENST00000477052 TP53I13Q8NBR0 393 aaPredicted RBP11.8□□□□□ -0.52
VARS2-208ENST00000477052 C3orf20Q8ND61 904 aa11.8□□□□□ -0.52
VARS2-208ENST00000477052 CXorf40AQ8TE69 158 aa11.8□□□□□ -0.52
VARS2-208ENST00000477052 TSACCQ96A04 125 aaPredicted RBP11.8□□□□□ -0.52
VARS2-208ENST00000477052 NTAN1Q96AB6 310 aa11.8□□□□□ -0.52
VARS2-208ENST00000477052 RAB7BQ96AH8 199 aa11.8□□□□□ -0.52
VARS2-208ENST00000477052 GBP4Q96PP9 640 aa11.8□□□□□ -0.52
VARS2-208ENST00000477052 DEPDC7Q96QD5 511 aa11.8□□□□□ -0.52
VARS2-208ENST00000477052 LRRC61Q9BV99 259 aa11.8□□□□□ -0.52
VARS2-208ENST00000477052 HSD3B7Q9H2F3 369 aa11.8□□□□□ -0.52
VARS2-208ENST00000477052 CPNE5Q9HCH3 593 aa11.8□□□□□ -0.52
VARS2-208ENST00000477052 TMEM51Q9NW97 253 aa11.8□□□□□ -0.52
VARS2-208ENST00000477052 SIRPGQ9P1W8 387 aa11.8□□□□□ -0.52
VARS2-208ENST00000477052 APOBEC3BQ9UH17 382 aaKnown RBP11.8□□□□□ -0.52
VARS2-208ENST00000477052 LIMA1Q9UHB6 759 aaKnown RBP11.8□□□□□ -0.52
VARS2-208ENST00000477052 SATB2Q9UPW6 733 aa11.8□□□□□ -0.52
VARS2-208ENST00000477052 COL27A1Q8IZC6 1860 aaPredicted RBP11.79□□□□□ -0.52
VARS2-208ENST00000477052 BUB1BO60566 1050 aaPredicted RBP11.79□□□□□ -0.52
VARS2-208ENST00000477052 TM7SF2O76062 418 aa11.79□□□□□ -0.52
VARS2-208ENST00000477052 ATP1A3P13637 1013 aa11.79□□□□□ -0.52
VARS2-208ENST00000477052 TSHRP16473 764 aa11.79□□□□□ -0.52
VARS2-208ENST00000477052 DUSP3P51452 185 aaPredicted RBP11.79□□□□□ -0.52
VARS2-208ENST00000477052 GEMIN4P57678 1058 aaKnown RBP11.79□□□□□ -0.52
VARS2-208ENST00000477052 NR0B2Q15466 257 aa11.79□□□□□ -0.52
VARS2-208ENST00000477052 ISXQ2M1V0 245 aa11.79□□□□□ -0.52
VARS2-208ENST00000477052 WSCD2Q2TBF2 565 aa11.79□□□□□ -0.52
VARS2-208ENST00000477052 PPP1R15BQ5SWA1 713 aa11.79□□□□□ -0.52
VARS2-208ENST00000477052 APTXQ7Z2E3 356 aaKnown RBP11.79□□□□□ -0.52
VARS2-208ENST00000477052 CAMK1DQ8IU85 385 aa11.79□□□□□ -0.52
VARS2-208ENST00000477052 HID1Q8IV36 788 aa11.79□□□□□ -0.52
VARS2-208ENST00000477052 CACTIN-AS1Q8N1I8 211 aa11.79□□□□□ -0.52
VARS2-208ENST00000477052 SLC39A7Q92504 469 aa11.79□□□□□ -0.52
VARS2-208ENST00000477052 UBL7Q96S82 380 aaPredicted RBP11.79□□□□□ -0.52
VARS2-208ENST00000477052 IL12RB2Q99665 862 aa11.79□□□□□ -0.52
VARS2-208ENST00000477052 NCAPGQ9BPX3 1015 aa11.79□□□□□ -0.52
VARS2-208ENST00000477052 DUSP23Q9BVJ7 150 aa11.79□□□□□ -0.52
VARS2-208ENST00000477052 OSBPL1AQ9BXW6 950 aa11.79□□□□□ -0.52
VARS2-208ENST00000477052 TRIM7Q9C029 511 aa11.79□□□□□ -0.52
VARS2-208ENST00000477052 PCDH12Q9NPG4 1184 aa11.79□□□□□ -0.52
VARS2-208ENST00000477052 GULP1Q9UBP9 304 aa11.79□□□□□ -0.52
VARS2-208ENST00000477052 PCSK1NQ9UHG2 260 aa11.79□□□□□ -0.52
VARS2-208ENST00000477052 OR1A2Q9Y585 309 aa11.79□□□□□ -0.52
VARS2-208ENST00000477052 RP1P56715 2156 aa11.79□□□□□ -0.52
VARS2-208ENST00000477052 LRRK1Q38SD2 2015 aa11.79□□□□□ -0.52
VARS2-208ENST00000477052 MGAQ8IWI9 3026 aa11.78□□□□□ -0.52
VARS2-208ENST00000477052 KIF26BQ2KJY2 2108 aa11.78□□□□□ -0.52
VARS2-208ENST00000477052 TTC24A2A3L6 582 aaPredicted RBP11.78□□□□□ -0.52
VARS2-208ENST00000477052 A8MX80 341 aa11.78□□□□□ -0.52
VARS2-208ENST00000477052 YY2O15391 372 aa11.78□□□□□ -0.52
VARS2-208ENST00000477052 TEX33O43247 280 aa11.78□□□□□ -0.52
VARS2-208ENST00000477052 PCCBP05166 539 aa11.78□□□□□ -0.52
VARS2-208ENST00000477052 GP1BAP07359 652 aa11.78□□□□□ -0.52
VARS2-208ENST00000477052 KRT10P13645 584 aa11.78□□□□□ -0.52
VARS2-208ENST00000477052 CDK11BP21127 795 aaKnown RBP11.78□□□□□ -0.52
VARS2-208ENST00000477052 XPAP23025 273 aaPredicted RBP11.78□□□□□ -0.52
VARS2-208ENST00000477052 PAPOLAP51003 745 aaKnown RBP11.78□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms