RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 SUPT3HO75486 399 aa5.41□□□□□ -1.54
SYNE1-220ENST00000471834 INHBAP08476 426 aa5.41□□□□□ -1.54
SYNE1-220ENST00000471834 VDRP11473 427 aa5.41□□□□□ -1.54
SYNE1-220ENST00000471834 HOXC8P31273 242 aa5.41□□□□□ -1.54
SYNE1-220ENST00000471834 MVKQ03426 396 aa5.41□□□□□ -1.54
SYNE1-220ENST00000471834 RIN1Q13671 783 aa5.41□□□□□ -1.54
SYNE1-220ENST00000471834 CSRNP1Q96S65 589 aa5.41□□□□□ -1.54
SYNE1-220ENST00000471834 THTPAQ9BU02 230 aa5.41□□□□□ -1.54
SYNE1-220ENST00000471834 ADI1Q9BV57 179 aa5.41□□□□□ -1.54
SYNE1-220ENST00000471834 YIPF2Q9BWQ6 316 aa5.41□□□□□ -1.54
SYNE1-220ENST00000471834 IL22Q9GZX6 179 aa5.41□□□□□ -1.54
SYNE1-220ENST00000471834 FKBP14Q9NWM8 211 aa5.41□□□□□ -1.54
SYNE1-220ENST00000471834 NPAP1Q9NZP6 1156 aa5.41□□□□□ -1.54
SYNE1-220ENST00000471834 DCTN4Q9UJW0 460 aa5.41□□□□□ -1.54
SYNE1-220ENST00000471834 PCDHGB3Q9Y5G1 929 aa5.41□□□□□ -1.54
SYNE1-220ENST00000471834 COPG1Q9Y678 874 aaKnown RBP5.41□□□□□ -1.54
SYNE1-220ENST00000471834 AUP1Q9Y679 476 aa5.41□□□□□ -1.54
SYNE1-220ENST00000471834 ARHGEF37A1IGU5 675 aa5.4□□□□□ -1.54
SYNE1-220ENST00000471834 PRORSD1PA6NEY8 169 aa5.4□□□□□ -1.54
SYNE1-220ENST00000471834 KLHL41O60662 606 aa5.4□□□□□ -1.54
SYNE1-220ENST00000471834 CLPXO76031 633 aa5.4□□□□□ -1.54
SYNE1-220ENST00000471834 PGM3O95394 542 aa5.4□□□□□ -1.54
SYNE1-220ENST00000471834 C2P06681 752 aa5.4□□□□□ -1.54
SYNE1-220ENST00000471834 ENDOUP21128 410 aaKnown RBP5.4□□□□□ -1.54
SYNE1-220ENST00000471834 PRKCQQ04759 706 aa5.4□□□□□ -1.54
SYNE1-220ENST00000471834 PTPN11Q06124 597 aaPredicted RBP5.4□□□□□ -1.54
SYNE1-220ENST00000471834 AARS2Q5JTZ9 985 aaKnown RBP5.4□□□□□ -1.54
SYNE1-220ENST00000471834 SAMD4BQ5PRF9 694 aaKnown RBP5.4□□□□□ -1.54
SYNE1-220ENST00000471834 RANBP10Q6VN20 620 aa5.4□□□□□ -1.54
SYNE1-220ENST00000471834 DENND5BQ6ZUT9 1274 aa5.4□□□□□ -1.54
SYNE1-220ENST00000471834 RFX8Q6ZV50 586 aa5.4□□□□□ -1.54
SYNE1-220ENST00000471834 BHLHA9Q7RTU4 235 aa5.4□□□□□ -1.54
SYNE1-220ENST00000471834 GABPB2Q8TAK5 448 aaPredicted RBP5.4□□□□□ -1.54
SYNE1-220ENST00000471834 KCTD13Q8WZ19 329 aa5.4□□□□□ -1.54
SYNE1-220ENST00000471834 PDLIM5Q96HC4 596 aaKnown RBP5.4□□□□□ -1.54
SYNE1-220ENST00000471834 ABHD8Q96I13 439 aa5.4□□□□□ -1.54
SYNE1-220ENST00000471834 HEXIM2Q96MH2 286 aaKnown RBP5.4□□□□□ -1.54
SYNE1-220ENST00000471834 SEZ6LQ9BYH1 1024 aa5.4□□□□□ -1.54
SYNE1-220ENST00000471834 RRN3Q9NYV6 651 aa5.4□□□□□ -1.54
SYNE1-220ENST00000471834 CDC14AQ9UNH5 594 aa5.4□□□□□ -1.54
SYNE1-220ENST00000471834 DNAJC16Q9Y2G8 782 aa5.4□□□□□ -1.54
SYNE1-220ENST00000471834 K7EPI3 171 aa5.4□□□□□ -1.54
SYNE1-220ENST00000471834 TIMM44O43615 452 aa5.4□□□□□ -1.54
SYNE1-220ENST00000471834 TRPA1O75762 1119 aa5.4□□□□□ -1.54
SYNE1-220ENST00000471834 ATP6V1B2P21281 511 aa5.4□□□□□ -1.54
SYNE1-220ENST00000471834 DPY19L1Q2PZI1 675 aa5.4□□□□□ -1.54
SYNE1-220ENST00000471834 DCAF6Q58WW2 860 aa5.4□□□□□ -1.54
SYNE1-220ENST00000471834 MDH1BQ5I0G3 518 aa5.4□□□□□ -1.54
SYNE1-220ENST00000471834 PM20D1Q6GTS8 502 aa5.4□□□□□ -1.54
SYNE1-220ENST00000471834 DEFB107AQ8IZN7 70 aa5.4□□□□□ -1.54
SYNE1-220ENST00000471834 ABHD11Q8NFV4 315 aa5.4□□□□□ -1.54
SYNE1-220ENST00000471834 SERPINI1Q99574 410 aa5.4□□□□□ -1.54
SYNE1-220ENST00000471834 ADPGKQ9BRR6 497 aa5.4□□□□□ -1.54
SYNE1-220ENST00000471834 MAN1C1Q9NR34 630 aa5.4□□□□□ -1.54
SYNE1-220ENST00000471834 NDOR1Q9UHB4 597 aa5.4□□□□□ -1.54
SYNE1-220ENST00000471834 PCDHA9Q9Y5H5 950 aa5.4□□□□□ -1.54
SYNE1-220ENST00000471834 CLDN24A6NM45 220 aa5.4□□□□□ -1.54
SYNE1-220ENST00000471834 DCLK1O15075 740 aa5.4□□□□□ -1.54
SYNE1-220ENST00000471834 POLR2EP19388 210 aaKnown RBP5.4□□□□□ -1.54
SYNE1-220ENST00000471834 CD247P20963 164 aa5.4□□□□□ -1.54
SYNE1-220ENST00000471834 GPX3P22352 226 aa5.4□□□□□ -1.54
SYNE1-220ENST00000471834 ARNTP27540 789 aa5.4□□□□□ -1.54
SYNE1-220ENST00000471834 GNA15P30679 374 aa5.4□□□□□ -1.54
SYNE1-220ENST00000471834 INPP1P49441 399 aa5.4□□□□□ -1.54
SYNE1-220ENST00000471834 CAPSQ13938 189 aa5.4□□□□□ -1.54
SYNE1-220ENST00000471834 TMTC4Q5T4D3 741 aa5.4□□□□□ -1.54
SYNE1-220ENST00000471834 DNAJC24Q6P3W2 148 aa5.4□□□□□ -1.54
SYNE1-220ENST00000471834 VN1R5Q7Z5H4 357 aa5.4□□□□□ -1.54
SYNE1-220ENST00000471834 RPL3LQ92901 407 aaKnown RBP5.4□□□□□ -1.54
SYNE1-220ENST00000471834 MPP4Q96JB8 637 aa5.4□□□□□ -1.54
SYNE1-220ENST00000471834 HOPXQ9BPY8 73 aaPredicted RBP5.4□□□□□ -1.54
SYNE1-220ENST00000471834 ARHGAP9Q9BRR9 750 aa5.4□□□□□ -1.54
SYNE1-220ENST00000471834 ASPSCR1Q9BZE9 553 aa5.4□□□□□ -1.54
SYNE1-220ENST00000471834 ZCWPW1Q9H0M4 648 aa5.4□□□□□ -1.54
SYNE1-220ENST00000471834 ANKMY1Q9P2S6 941 aa5.4□□□□□ -1.54
SYNE1-220ENST00000471834 KLF15Q9UIH9 416 aa5.4□□□□□ -1.54
SYNE1-220ENST00000471834 ASB14A6NK59 587 aa5.4□□□□□ -1.55
SYNE1-220ENST00000471834 GNGT2O14610 69 aa5.4□□□□□ -1.55
SYNE1-220ENST00000471834 DLX3O60479 287 aa5.4□□□□□ -1.55
SYNE1-220ENST00000471834 CNTN5O94779 1100 aa5.4□□□□□ -1.55
SYNE1-220ENST00000471834 GSTT2P0CG29 244 aa5.4□□□□□ -1.55
SYNE1-220ENST00000471834 GSTT2BP0CG30 244 aa5.4□□□□□ -1.55
SYNE1-220ENST00000471834 TRPC1P48995 793 aa5.4□□□□□ -1.55
SYNE1-220ENST00000471834 ARL4DP49703 201 aa5.4□□□□□ -1.55
SYNE1-220ENST00000471834 STX5Q13190 355 aa5.4□□□□□ -1.55
SYNE1-220ENST00000471834 DGKDQ16760 1214 aa5.4□□□□□ -1.55
SYNE1-220ENST00000471834 SLC44A4Q53GD3 710 aa5.4□□□□□ -1.55
SYNE1-220ENST00000471834 TREML2Q5T2D2 321 aa5.4□□□□□ -1.55
SYNE1-220ENST00000471834 PMF1Q6P1K2 205 aa5.4□□□□□ -1.55
SYNE1-220ENST00000471834 LRRC52Q8N7C0 313 aa5.4□□□□□ -1.55
SYNE1-220ENST00000471834 CCNYQ8ND76 341 aa5.4□□□□□ -1.55
SYNE1-220ENST00000471834 OR6Q1Q8NGQ2 317 aa5.4□□□□□ -1.55
SYNE1-220ENST00000471834 PYDC1Q8WXC3 89 aa5.4□□□□□ -1.55
SYNE1-220ENST00000471834 CPNE1Q99829 537 aa5.4□□□□□ -1.55
SYNE1-220ENST00000471834 MLPHQ9BV36 600 aaPredicted RBP5.4□□□□□ -1.55
SYNE1-220ENST00000471834 SLIRPQ9GZT3 109 aaKnown RBP5.4□□□□□ -1.55
SYNE1-220ENST00000471834 NXF1Q9UBU9 619 aaKnown RBP5.4□□□□□ -1.55
SYNE1-220ENST00000471834 ITM2BQ9Y287 266 aa5.4□□□□□ -1.55
SYNE1-220ENST00000471834 PMF1-BGLAPU3KQ54 211 aa5.4□□□□□ -1.55
SYNE1-220ENST00000471834 AP3B1O00203 1094 aa5.4□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms