RNA–Protein interactions for RNA: ENST00000466781.5

HPS4-209, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 1 (best)

Gene HPS4, Length 6,136 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-209ENST00000466781 C11orf49Q9H6J7 331 aa8.78□□□□□ -1
HPS4-209ENST00000466781 SLC35C2Q9NQQ7 365 aa8.78□□□□□ -1
HPS4-209ENST00000466781 CLN6Q9NWW5 311 aa8.78□□□□□ -1
HPS4-209ENST00000466781 ING3Q9NXR8 418 aa8.78□□□□□ -1
HPS4-209ENST00000466781 RPS6KA6Q9UK32 745 aa8.78□□□□□ -1
HPS4-209ENST00000466781 PNMA8CA0A1B0GUJ8 204 aa8.77□□□□□ -1
HPS4-209ENST00000466781 H2AFXP16104 143 aaPredicted RBP8.77□□□□□ -1
HPS4-209ENST00000466781 PDX1P52945 283 aa8.77□□□□□ -1
HPS4-209ENST00000466781 CBX2Q14781 532 aaPredicted RBP8.77□□□□□ -1
HPS4-209ENST00000466781 XKR6Q5GH73 641 aa8.77□□□□□ -1
HPS4-209ENST00000466781 LRRC49Q8IUZ0 686 aa8.77□□□□□ -1
HPS4-209ENST00000466781 ADHFE1Q8IWW8 467 aa8.77□□□□□ -1
HPS4-209ENST00000466781 GULP1Q9UBP9 304 aa8.77□□□□□ -1
HPS4-209ENST00000466781 PCDHA11Q9Y5I1 949 aa8.77□□□□□ -1
HPS4-209ENST00000466781 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP8.77□□□□□ -1.01
HPS4-209ENST00000466781 CXCL14O95715 111 aa8.77□□□□□ -1.01
HPS4-209ENST00000466781 LTA4HP09960 611 aaKnown RBP8.77□□□□□ -1.01
HPS4-209ENST00000466781 KELP23276 732 aa8.77□□□□□ -1.01
HPS4-209ENST00000466781 PAX3P23760 479 aa8.77□□□□□ -1.01
HPS4-209ENST00000466781 IL12RB1P42701 662 aa8.77□□□□□ -1.01
HPS4-209ENST00000466781 OMPP47874 163 aa8.77□□□□□ -1.01
HPS4-209ENST00000466781 TTPAP49638 278 aa8.77□□□□□ -1.01
HPS4-209ENST00000466781 KCNA10Q16322 511 aa8.77□□□□□ -1.01
HPS4-209ENST00000466781 AKIRIN2Q53H80 203 aa8.77□□□□□ -1.01
HPS4-209ENST00000466781 ZNF549Q6P9A3 640 aa8.77□□□□□ -1.01
HPS4-209ENST00000466781 VCPIP1Q96JH7 1222 aa8.77□□□□□ -1.01
HPS4-209ENST00000466781 MYOCQ99972 504 aa8.77□□□□□ -1.01
HPS4-209ENST00000466781 PCDH12Q9NPG4 1184 aa8.77□□□□□ -1.01
HPS4-209ENST00000466781 TMPRSS4Q9NRS4 437 aa8.77□□□□□ -1.01
HPS4-209ENST00000466781 TOR4AQ9NXH8 423 aa8.77□□□□□ -1.01
HPS4-209ENST00000466781 E5RJQ4 531 aa8.77□□□□□ -1.01
HPS4-209ENST00000466781 FZD9O00144 591 aa8.77□□□□□ -1.01
HPS4-209ENST00000466781 AKAP3O75969 853 aa8.77□□□□□ -1.01
HPS4-209ENST00000466781 SLITRK3O94933 977 aa8.77□□□□□ -1.01
HPS4-209ENST00000466781 ZCCHC18P0CG32 403 aa8.77□□□□□ -1.01
HPS4-209ENST00000466781 UGT1A5P35504 534 aa8.77□□□□□ -1.01
HPS4-209ENST00000466781 ARHGDIBP52566 201 aa8.77□□□□□ -1.01
HPS4-209ENST00000466781 CRYBB1P53674 252 aaPredicted RBP8.77□□□□□ -1.01
HPS4-209ENST00000466781 SMIM11AP58511 58 aa8.77□□□□□ -1.01
HPS4-209ENST00000466781 AP5B1Q2VPB7 878 aa8.77□□□□□ -1.01
HPS4-209ENST00000466781 WSCD1Q658N2 575 aa8.77□□□□□ -1.01
HPS4-209ENST00000466781 NOA1Q8NC60 698 aaKnown RBP8.77□□□□□ -1.01
HPS4-209ENST00000466781 STAG3L4Q8TBR4 150 aa8.77□□□□□ -1.01
HPS4-209ENST00000466781 GDPD5Q8WTR4 605 aa8.77□□□□□ -1.01
HPS4-209ENST00000466781 MYLPFQ96A32 169 aa8.77□□□□□ -1.01
HPS4-209ENST00000466781 LMAN2LQ9H0V9 348 aa8.77□□□□□ -1.01
HPS4-209ENST00000466781 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP8.77□□□□□ -1.01
HPS4-209ENST00000466781 CCDC167Q9P0B6 97 aa8.77□□□□□ -1.01
HPS4-209ENST00000466781 MBD2Q9UBB5 411 aa8.77□□□□□ -1.01
HPS4-209ENST00000466781 PLAGL2Q9UPG8 496 aa8.77□□□□□ -1.01
HPS4-209ENST00000466781 COL1A2P08123 1366 aa8.77□□□□□ -1.01
HPS4-209ENST00000466781 ABHD14A-ACY1A0A1B0GW23 586 aa8.77□□□□□ -1.01
HPS4-209ENST00000466781 TRDMT1O14717 391 aaKnown RBP8.77□□□□□ -1.01
HPS4-209ENST00000466781 MAGEB3O15480 346 aa8.77□□□□□ -1.01
HPS4-209ENST00000466781 MFN2O95140 757 aa8.77□□□□□ -1.01
HPS4-209ENST00000466781 ITGA2P17301 1181 aa8.77□□□□□ -1.01
HPS4-209ENST00000466781 CDC25CP30307 473 aa8.77□□□□□ -1.01
HPS4-209ENST00000466781 IRAK1P51617 712 aa8.77□□□□□ -1.01
HPS4-209ENST00000466781 PLK1P53350 603 aa8.77□□□□□ -1.01
HPS4-209ENST00000466781 ABRQ12979 859 aa8.77□□□□□ -1.01
HPS4-209ENST00000466781 PCBP1Q15365 356 aaKnown RBP eCLIP8.77□□□□□ -1.01
HPS4-209ENST00000466781 PSMD5Q16401 504 aa8.77□□□□□ -1.01
HPS4-209ENST00000466781 TRMT5Q32P41 509 aaKnown RBP8.77□□□□□ -1.01
HPS4-209ENST00000466781 PSTKQ8IV42 348 aaKnown RBP8.77□□□□□ -1.01
HPS4-209ENST00000466781 WNT8BQ93098 351 aa8.77□□□□□ -1.01
HPS4-209ENST00000466781 ZBTB45Q96K62 511 aaPredicted RBP8.77□□□□□ -1.01
HPS4-209ENST00000466781 IL22Q9GZX6 179 aa8.77□□□□□ -1.01
HPS4-209ENST00000466781 ALG9Q9H6U8 611 aa8.77□□□□□ -1.01
HPS4-209ENST00000466781 CAB39LQ9H9S4 337 aa8.77□□□□□ -1.01
HPS4-209ENST00000466781 VPS45Q9NRW7 570 aa8.77□□□□□ -1.01
HPS4-209ENST00000466781 MARK1Q9P0L2 795 aa8.77□□□□□ -1.01
HPS4-209ENST00000466781 MRPS33Q9Y291 106 aaKnown RBP8.77□□□□□ -1.01
HPS4-209ENST00000466781 TBC1D3DA0A087WVF3 549 aa8.77□□□□□ -1.01
HPS4-209ENST00000466781 TBC1D3IA0A087WXS9 549 aa8.77□□□□□ -1.01
HPS4-209ENST00000466781 TBC1D3EA0A087X179 549 aa8.77□□□□□ -1.01
HPS4-209ENST00000466781 TBC1D3KA0A087X1G2 549 aa8.77□□□□□ -1.01
HPS4-209ENST00000466781 TBC1D3FA6NER0 549 aaPredicted RBP8.77□□□□□ -1.01
HPS4-209ENST00000466781 SPATA31C2B4DYI2 1134 aa8.77□□□□□ -1.01
HPS4-209ENST00000466781 TBC1D3LB9A6J9 549 aa8.77□□□□□ -1.01
HPS4-209ENST00000466781 EML1O00423 815 aa8.77□□□□□ -1.01
HPS4-209ENST00000466781 CLOCKO15516 846 aa8.77□□□□□ -1.01
HPS4-209ENST00000466781 TBC1D3HP0C7X1 549 aa8.77□□□□□ -1.01
HPS4-209ENST00000466781 SELPP16109 830 aa8.77□□□□□ -1.01
HPS4-209ENST00000466781 UGT2B15P54855 530 aa8.77□□□□□ -1.01
HPS4-209ENST00000466781 NAA20P61599 178 aa8.77□□□□□ -1.01
HPS4-209ENST00000466781 LGALS3BPQ08380 585 aa8.77□□□□□ -1.01
HPS4-209ENST00000466781 NR1D2Q14995 579 aa8.77□□□□□ -1.01
HPS4-209ENST00000466781 TBC1D3GQ6DHY5 549 aa8.77□□□□□ -1.01
HPS4-209ENST00000466781 TBC1D3CQ6IPX1 549 aa8.77□□□□□ -1.01
HPS4-209ENST00000466781 KCNT2Q6UVM3 1135 aa8.77□□□□□ -1.01
HPS4-209ENST00000466781 ZDHHC13Q8IUH4 622 aa8.77□□□□□ -1.01
HPS4-209ENST00000466781 GPR135Q8IZ08 494 aa8.77□□□□□ -1.01
HPS4-209ENST00000466781 TBC1D3Q8IZP1 549 aaPredicted RBP8.77□□□□□ -1.01
HPS4-209ENST00000466781 OR6Y1Q8NGX8 325 aa8.77□□□□□ -1.01
HPS4-209ENST00000466781 NARS2Q96I59 477 aaKnown RBP8.77□□□□□ -1.01
HPS4-209ENST00000466781 Q96MT0 163 aa8.77□□□□□ -1.01
HPS4-209ENST00000466781 TISP43B9A030 160 aa8.76□□□□□ -1.01
HPS4-209ENST00000466781 KCNK1O00180 336 aa8.76□□□□□ -1.01
HPS4-209ENST00000466781 NFKBIEO00221 500 aa8.76□□□□□ -1.01
HPS4-209ENST00000466781 PRODHO43272 600 aa8.76□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms