RNA–Protein interactions for RNA: ENST00000460696.1

NPHP4-204, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 3,967 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-204ENST00000460696 SEMA6AQ9H2E6 1030 aa11.75□□□□□ -0.53
NPHP4-204ENST00000460696 CRTAC1Q9NQ79 661 aa11.75□□□□□ -0.53
NPHP4-204ENST00000460696 GDAP2Q9NXN4 497 aa11.75□□□□□ -0.53
NPHP4-204ENST00000460696 VPS28Q9UK41 221 aa11.75□□□□□ -0.53
NPHP4-204ENST00000460696 RPL26L1Q9UNX3 145 aaKnown RBP11.75□□□□□ -0.53
NPHP4-204ENST00000460696 ABLIM1O14639 778 aa11.74□□□□□ -0.53
NPHP4-204ENST00000460696 TLL1O43897 1013 aa11.74□□□□□ -0.53
NPHP4-204ENST00000460696 VPS26AO75436 327 aa11.74□□□□□ -0.53
NPHP4-204ENST00000460696 LTA4HP09960 611 aaKnown RBP11.74□□□□□ -0.53
NPHP4-204ENST00000460696 GRIK3Q13003 919 aa11.74□□□□□ -0.53
NPHP4-204ENST00000460696 IKBKEQ14164 716 aa11.74□□□□□ -0.53
NPHP4-204ENST00000460696 PLEKHG4Q58EX7 1191 aa11.74□□□□□ -0.53
NPHP4-204ENST00000460696 TMCO4Q5TGY1 634 aa11.74□□□□□ -0.53
NPHP4-204ENST00000460696 ANGPTL8Q6UXH0 198 aa11.74□□□□□ -0.53
NPHP4-204ENST00000460696 BHLHE22Q8NFJ8 381 aaPredicted RBP11.74□□□□□ -0.53
NPHP4-204ENST00000460696 SCUBE2Q9NQ36 999 aa11.74□□□□□ -0.53
NPHP4-204ENST00000460696 STX18Q9P2W9 335 aaKnown RBP11.74□□□□□ -0.53
NPHP4-204ENST00000460696 NEMP2A6NFY4 417 aa11.74□□□□□ -0.53
NPHP4-204ENST00000460696 CRTAMO95727 393 aa11.74□□□□□ -0.53
NPHP4-204ENST00000460696 IDH3AP50213 366 aa11.74□□□□□ -0.53
NPHP4-204ENST00000460696 GALNT3Q14435 633 aa11.74□□□□□ -0.53
NPHP4-204ENST00000460696 TMTC4Q5T4D3 741 aa11.74□□□□□ -0.53
NPHP4-204ENST00000460696 NAIF1Q69YI7 327 aaPredicted RBP11.74□□□□□ -0.53
NPHP4-204ENST00000460696 PIWIL4Q7Z3Z4 852 aaKnown RBP11.74□□□□□ -0.53
NPHP4-204ENST00000460696 ZNF467Q7Z7K2 595 aaPredicted RBP11.74□□□□□ -0.53
NPHP4-204ENST00000460696 SLC22A9Q8IVM8 553 aa11.74□□□□□ -0.53
NPHP4-204ENST00000460696 FSTL5Q8N475 847 aaPredicted RBP11.74□□□□□ -0.53
NPHP4-204ENST00000460696 DBF4BQ8NFT6 615 aa11.74□□□□□ -0.53
NPHP4-204ENST00000460696 CYGBQ8WWM9 190 aa11.74□□□□□ -0.53
NPHP4-204ENST00000460696 DRC3Q9H069 523 aa11.74□□□□□ -0.53
NPHP4-204ENST00000460696 SYTL2Q9HCH5 934 aa11.74□□□□□ -0.53
NPHP4-204ENST00000460696 GID8Q9NWU2 228 aa11.74□□□□□ -0.53
NPHP4-204ENST00000460696 ANKRD12Q6UB98 2062 aa11.74□□□□□ -0.53
NPHP4-204ENST00000460696 PSMD12O00232 456 aaPredicted RBP11.74□□□□□ -0.53
NPHP4-204ENST00000460696 STAU1O95793 577 aaKnown RBP11.74□□□□□ -0.53
NPHP4-204ENST00000460696 PFKMP08237 780 aa11.74□□□□□ -0.53
NPHP4-204ENST00000460696 PRKAA2P54646 552 aa11.74□□□□□ -0.53
NPHP4-204ENST00000460696 TAS2R39P59534 338 aa11.74□□□□□ -0.53
NPHP4-204ENST00000460696 CAPRIN1Q14444 709 aaKnown RBP11.74□□□□□ -0.53
NPHP4-204ENST00000460696 GRB14Q14449 540 aa11.74□□□□□ -0.53
NPHP4-204ENST00000460696 NOMO2Q5JPE7 1267 aa11.74□□□□□ -0.53
NPHP4-204ENST00000460696 BRMS1LQ5PSV4 323 aa11.74□□□□□ -0.53
NPHP4-204ENST00000460696 MON1AQ86VX9 555 aa11.74□□□□□ -0.53
NPHP4-204ENST00000460696 ARNTL2Q8WYA1 636 aa11.74□□□□□ -0.53
NPHP4-204ENST00000460696 MOCOSQ96EN8 888 aa11.74□□□□□ -0.53
NPHP4-204ENST00000460696 ABHD8Q96I13 439 aa11.74□□□□□ -0.53
NPHP4-204ENST00000460696 NPAS2Q99743 824 aa11.74□□□□□ -0.53
NPHP4-204ENST00000460696 FTHL17Q9BXU8 183 aa11.74□□□□□ -0.53
NPHP4-204ENST00000460696 SLC39A8Q9C0K1 460 aa11.74□□□□□ -0.53
NPHP4-204ENST00000460696 TRPM5Q9NZQ8 1165 aa11.74□□□□□ -0.53
NPHP4-204ENST00000460696 KANSL3Q9P2N6 904 aa11.74□□□□□ -0.53
NPHP4-204ENST00000460696 SLC7A8Q9UHI5 535 aa11.74□□□□□ -0.53
NPHP4-204ENST00000460696 A8MX80 341 aa11.73□□□□□ -0.53
NPHP4-204ENST00000460696 FAM189A1O60320 539 aa11.73□□□□□ -0.53
NPHP4-204ENST00000460696 TRIM16O95361 564 aa11.73□□□□□ -0.53
NPHP4-204ENST00000460696 KCNE1P15382 129 aa11.73□□□□□ -0.53
NPHP4-204ENST00000460696 FGFR3P22607 806 aa11.73□□□□□ -0.53
NPHP4-204ENST00000460696 IL4RP24394 825 aa11.73□□□□□ -0.53
NPHP4-204ENST00000460696 FBXO48Q5FWF7 155 aa11.73□□□□□ -0.53
NPHP4-204ENST00000460696 RNF219Q5W0B1 726 aaPredicted RBP11.73□□□□□ -0.53
NPHP4-204ENST00000460696 SCIMPQ6UWF3 145 aa11.73□□□□□ -0.53
NPHP4-204ENST00000460696 DHDDSQ86SQ9 333 aa11.73□□□□□ -0.53
NPHP4-204ENST00000460696 CIR1Q86X95 450 aaPredicted RBP11.73□□□□□ -0.53
NPHP4-204ENST00000460696 TREML1Q86YW5 311 aa11.73□□□□□ -0.53
NPHP4-204ENST00000460696 FBXO39Q8N4B4 442 aa11.73□□□□□ -0.53
NPHP4-204ENST00000460696 PTGR2Q8N8N7 351 aaPredicted RBP11.73□□□□□ -0.53
NPHP4-204ENST00000460696 SLC7A6OSQ96CW6 309 aaPredicted RBP11.73□□□□□ -0.53
NPHP4-204ENST00000460696 ACBD6Q9BR61 282 aa11.73□□□□□ -0.53
NPHP4-204ENST00000460696 ADAMTS10Q9H324 1103 aa11.73□□□□□ -0.53
NPHP4-204ENST00000460696 SEMA4BQ9NPR2 832 aaPredicted RBP11.73□□□□□ -0.53
NPHP4-204ENST00000460696 GMIPQ9P107 970 aa11.73□□□□□ -0.53
NPHP4-204ENST00000460696 hCG_2014768A0A024R1R8 64 aa11.73□□□□□ -0.53
NPHP4-204ENST00000460696 E9PAM4 449 aa11.73□□□□□ -0.53
NPHP4-204ENST00000460696 MBL2P11226 248 aaPredicted RBP11.73□□□□□ -0.53
NPHP4-204ENST00000460696 DSC2Q02487 901 aa11.73□□□□□ -0.53
NPHP4-204ENST00000460696 TAF10Q12962 218 aa11.73□□□□□ -0.53
NPHP4-204ENST00000460696 LBRQ14739 615 aaKnown RBP11.73□□□□□ -0.53
NPHP4-204ENST00000460696 NRF1Q16656 503 aa11.73□□□□□ -0.53
NPHP4-204ENST00000460696 WLSQ5T9L3 541 aa11.73□□□□□ -0.53
NPHP4-204ENST00000460696 TMEM198Q66K66 360 aa11.73□□□□□ -0.53
NPHP4-204ENST00000460696 GLT6D1Q7Z4J2 308 aa11.73□□□□□ -0.53
NPHP4-204ENST00000460696 SNX31Q8N9S9 440 aa11.73□□□□□ -0.53
NPHP4-204ENST00000460696 KBTBD7Q8WVZ9 684 aa11.73□□□□□ -0.53
NPHP4-204ENST00000460696 EMID1Q96A84 441 aaPredicted RBP11.73□□□□□ -0.53
NPHP4-204ENST00000460696 CCT7Q99832 543 aa11.73□□□□□ -0.53
NPHP4-204ENST00000460696 MRPL57Q9BQC6 102 aaKnown RBP11.73□□□□□ -0.53
NPHP4-204ENST00000460696 PNPLA8Q9NP80 782 aa11.73□□□□□ -0.53
NPHP4-204ENST00000460696 CROTQ9UKG9 612 aa11.73□□□□□ -0.53
NPHP4-204ENST00000460696 VWA7Q9Y334 891 aa11.73□□□□□ -0.53
NPHP4-204ENST00000460696 TCRBV5S1A1TA0A578 114 aa11.73□□□□□ -0.53
NPHP4-204ENST00000460696 TTC24A2A3L6 582 aaPredicted RBP11.73□□□□□ -0.53
NPHP4-204ENST00000460696 C9IYK1 514 aa11.73□□□□□ -0.53
NPHP4-204ENST00000460696 PFDN1O60925 122 aa11.73□□□□□ -0.53
NPHP4-204ENST00000460696 RPLP2P05387 115 aaKnown RBP11.73□□□□□ -0.53
NPHP4-204ENST00000460696 CKMP06732 381 aa11.73□□□□□ -0.53
NPHP4-204ENST00000460696 NFKBIAP25963 317 aa11.73□□□□□ -0.53
NPHP4-204ENST00000460696 SCNN1AP37088 669 aa11.73□□□□□ -0.53
NPHP4-204ENST00000460696 PRMT2P55345 433 aa11.73□□□□□ -0.53
NPHP4-204ENST00000460696 GJA9P57773 515 aa11.73□□□□□ -0.53
NPHP4-204ENST00000460696 ZBTB17Q13105 803 aa11.73□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms