RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 IQCF3P0C7M6 154 aa11.81□□□□□ -0.52
CPSF3-202ENST00000460593 VDRP11473 427 aa11.81□□□□□ -0.52
CPSF3-202ENST00000460593 JAK1P23458 1154 aa11.81□□□□□ -0.52
CPSF3-202ENST00000460593 ALDH4A1P30038 563 aa11.81□□□□□ -0.52
CPSF3-202ENST00000460593 AP3M2P53677 418 aa11.81□□□□□ -0.52
CPSF3-202ENST00000460593 RAD23AP54725 363 aa11.81□□□□□ -0.52
CPSF3-202ENST00000460593 SLC6A3Q01959 620 aa11.81□□□□□ -0.52
CPSF3-202ENST00000460593 SEPT6Q14141 434 aa11.81□□□□□ -0.52
CPSF3-202ENST00000460593 SF3B4Q15427 424 aaKnown RBP eCLIP11.81□□□□□ -0.52
CPSF3-202ENST00000460593 SLC36A3Q495N2 470 aa11.81□□□□□ -0.52
CPSF3-202ENST00000460593 ZNF618Q5T7W0 954 aa11.81□□□□□ -0.52
CPSF3-202ENST00000460593 TBPL2Q6SJ96 375 aa11.81□□□□□ -0.52
CPSF3-202ENST00000460593 KDELC2Q7Z4H8 507 aa11.81□□□□□ -0.52
CPSF3-202ENST00000460593 OR2T34Q8NGX1 318 aa11.81□□□□□ -0.52
CPSF3-202ENST00000460593 OR2T3Q8NH03 318 aa11.81□□□□□ -0.52
CPSF3-202ENST00000460593 SNX19Q92543 992 aa11.81□□□□□ -0.52
CPSF3-202ENST00000460593 HPDLQ96IR7 371 aa11.81□□□□□ -0.52
CPSF3-202ENST00000460593 GLT1D1Q96MS3 346 aa11.81□□□□□ -0.52
CPSF3-202ENST00000460593 EFHD1Q9BUP0 239 aa11.81□□□□□ -0.52
CPSF3-202ENST00000460593 DGCR6LQ9BY27 220 aa11.81□□□□□ -0.52
CPSF3-202ENST00000460593 PTPRHQ9HD43 1115 aa11.81□□□□□ -0.52
CPSF3-202ENST00000460593 SYNPO2Q9UMS6 1093 aa11.81□□□□□ -0.52
CPSF3-202ENST00000460593 NME4O00746 187 aa11.81□□□□□ -0.52
CPSF3-202ENST00000460593 DDHD2O94830 711 aa11.81□□□□□ -0.52
CPSF3-202ENST00000460593 MLNP12872 115 aa11.81□□□□□ -0.52
CPSF3-202ENST00000460593 TCEA1P23193 301 aaKnown RBP11.81□□□□□ -0.52
CPSF3-202ENST00000460593 ADORA2BP29275 332 aa11.81□□□□□ -0.52
CPSF3-202ENST00000460593 RABGGTBP53611 331 aa11.81□□□□□ -0.52
CPSF3-202ENST00000460593 IFITM3Q01628 133 aa11.81□□□□□ -0.52
CPSF3-202ENST00000460593 SPCS2Q15005 226 aa11.81□□□□□ -0.52
CPSF3-202ENST00000460593 KCNJ8Q15842 424 aa11.81□□□□□ -0.52
CPSF3-202ENST00000460593 SPANXN3Q5MJ09 141 aa11.81□□□□□ -0.52
CPSF3-202ENST00000460593 ATF7IP2Q5U623 682 aa11.81□□□□□ -0.52
CPSF3-202ENST00000460593 FAM117BQ6P1L5 589 aa11.81□□□□□ -0.52
CPSF3-202ENST00000460593 CXorf38Q8TB03 319 aa11.81□□□□□ -0.52
CPSF3-202ENST00000460593 TRPC4APQ8TEL6 797 aa11.81□□□□□ -0.52
CPSF3-202ENST00000460593 UPF3AQ9H1J1 476 aaKnown RBP11.81□□□□□ -0.52
CPSF3-202ENST00000460593 LRRC40Q9H9A6 602 aa11.81□□□□□ -0.52
CPSF3-202ENST00000460593 RPF1Q9H9Y2 349 aaKnown RBP11.81□□□□□ -0.52
CPSF3-202ENST00000460593 IFT80Q9P2H3 777 aaPredicted RBP11.81□□□□□ -0.52
CPSF3-202ENST00000460593 TCAF1Q9Y4C2 921 aa11.81□□□□□ -0.52
CPSF3-202ENST00000460593 NME7Q9Y5B8 376 aa11.81□□□□□ -0.52
CPSF3-202ENST00000460593 DHRS12A0PJE2 317 aa11.81□□□□□ -0.52
CPSF3-202ENST00000460593 H0YJX3 145 aa11.81□□□□□ -0.52
CPSF3-202ENST00000460593 VWA5AO00534 786 aa11.81□□□□□ -0.52
CPSF3-202ENST00000460593 PPEF2O14830 753 aa11.81□□□□□ -0.52
CPSF3-202ENST00000460593 MDM4O15151 490 aa11.81□□□□□ -0.52
CPSF3-202ENST00000460593 SYNCRIPO60506 623 aaKnown RBP11.81□□□□□ -0.52
CPSF3-202ENST00000460593 NOL3O60936 208 aaKnown RBP11.81□□□□□ -0.52
CPSF3-202ENST00000460593 BMP2P12643 396 aa11.81□□□□□ -0.52
CPSF3-202ENST00000460593 BDNFP23560 247 aa11.81□□□□□ -0.52
CPSF3-202ENST00000460593 ACADVLP49748 655 aa11.81□□□□□ -0.52
CPSF3-202ENST00000460593 LSM3P62310 102 aaKnown RBP11.81□□□□□ -0.52
CPSF3-202ENST00000460593 DPYSL2Q16555 572 aa11.81□□□□□ -0.52
CPSF3-202ENST00000460593 VPS26BQ4G0F5 336 aa11.81□□□□□ -0.52
CPSF3-202ENST00000460593 ZPBP2Q6X784 338 aa11.81□□□□□ -0.52
CPSF3-202ENST00000460593 CAMK1DQ8IU85 385 aa11.81□□□□□ -0.52
CPSF3-202ENST00000460593 NSUN6Q8TEA1 469 aaKnown RBP11.81□□□□□ -0.52
CPSF3-202ENST00000460593 HDAC10Q969S8 669 aa11.81□□□□□ -0.52
CPSF3-202ENST00000460593 TSNARE1Q96NA8 513 aa11.81□□□□□ -0.52
CPSF3-202ENST00000460593 SEPHS2Q99611 448 aa11.81□□□□□ -0.52
CPSF3-202ENST00000460593 MRPL45Q9BRJ2 306 aaKnown RBP11.81□□□□□ -0.52
CPSF3-202ENST00000460593 LHPPQ9H008 270 aa11.81□□□□□ -0.52
CPSF3-202ENST00000460593 CDT1Q9H211 546 aa11.81□□□□□ -0.52
CPSF3-202ENST00000460593 TMEM134Q9H6X4 195 aa11.81□□□□□ -0.52
CPSF3-202ENST00000460593 CHST12Q9NRB3 414 aa11.81□□□□□ -0.52
CPSF3-202ENST00000460593 WARS2Q9UGM6 360 aaKnown RBP11.81□□□□□ -0.52
CPSF3-202ENST00000460593 MAFBQ9Y5Q3 323 aaPredicted RBP11.81□□□□□ -0.52
CPSF3-202ENST00000460593 ZNF638Q14966 1978 aaKnown RBP11.81□□□□□ -0.52
CPSF3-202ENST00000460593 TRIM64CA6NLI5 447 aa11.8□□□□□ -0.52
CPSF3-202ENST00000460593 AURKAO14965 403 aa11.8□□□□□ -0.52
CPSF3-202ENST00000460593 INPP4BO15327 924 aa11.8□□□□□ -0.52
CPSF3-202ENST00000460593 BAIAP3O94812 1187 aa11.8□□□□□ -0.52
CPSF3-202ENST00000460593 ASNSP08243 561 aa11.8□□□□□ -0.52
CPSF3-202ENST00000460593 PABPC1P11940 636 aaKnown RBP11.8□□□□□ -0.52
CPSF3-202ENST00000460593 PYCR3Q53H96 274 aa11.8□□□□□ -0.52
CPSF3-202ENST00000460593 PELI3Q8N2H9 469 aa11.8□□□□□ -0.52
CPSF3-202ENST00000460593 TNIP2Q8NFZ5 429 aa11.8□□□□□ -0.52
CPSF3-202ENST00000460593 USP33Q8TEY7 942 aa11.8□□□□□ -0.52
CPSF3-202ENST00000460593 ALPK1Q96QP1 1244 aa11.8□□□□□ -0.52
CPSF3-202ENST00000460593 IL22Q9GZX6 179 aa11.8□□□□□ -0.52
CPSF3-202ENST00000460593 DPEP3Q9H4B8 488 aa11.8□□□□□ -0.52
CPSF3-202ENST00000460593 RIC8BQ9NVN3 520 aa11.8□□□□□ -0.52
CPSF3-202ENST00000460593 KLQ9UEF7 1012 aa11.8□□□□□ -0.52
CPSF3-202ENST00000460593 TMED5Q9Y3A6 229 aa11.8□□□□□ -0.52
CPSF3-202ENST00000460593 CPQQ9Y646 472 aa11.8□□□□□ -0.52
CPSF3-202ENST00000460593 ZBTB24O43167 697 aaPredicted RBP11.8□□□□□ -0.52
CPSF3-202ENST00000460593 NRP2O60462 931 aa11.8□□□□□ -0.52
CPSF3-202ENST00000460593 CABYRO75952 493 aa11.8□□□□□ -0.52
CPSF3-202ENST00000460593 AHSGP02765 367 aa11.8□□□□□ -0.52
CPSF3-202ENST00000460593 SNRPB2P08579 225 aaKnown RBP11.8□□□□□ -0.52
CPSF3-202ENST00000460593 IL7RP16871 459 aa11.8□□□□□ -0.52
CPSF3-202ENST00000460593 DMPKQ09013 629 aa11.8□□□□□ -0.52
CPSF3-202ENST00000460593 STX5Q13190 355 aa11.8□□□□□ -0.52
CPSF3-202ENST00000460593 AQP6Q13520 282 aa11.8□□□□□ -0.52
CPSF3-202ENST00000460593 HSDL1Q3SXM5 330 aa11.8□□□□□ -0.52
CPSF3-202ENST00000460593 ABRAXAS1Q6UWZ7 409 aa11.8□□□□□ -0.52
CPSF3-202ENST00000460593 DDIASQ8IXT1 998 aa11.8□□□□□ -0.52
CPSF3-202ENST00000460593 SMG8Q8ND04 991 aaKnown RBP11.8□□□□□ -0.52
CPSF3-202ENST00000460593 ZC3H15Q8WU90 426 aaKnown RBP11.8□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms