RNA–Protein interactions for RNA: ENST00000447578.6

VPS29-202, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 996 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-202ENST00000447578 FAM90A22PA8MWA6 464 aa4.41□□□□□ -1.7
VPS29-202ENST00000447578 FAM90A12PA8MX19 464 aa4.41□□□□□ -1.7
VPS29-202ENST00000447578 FAM90A23PA8MXZ1 464 aa4.41□□□□□ -1.7
VPS29-202ENST00000447578 GCATO75600 419 aa4.41□□□□□ -1.7
VPS29-202ENST00000447578 TSPAN9O75954 239 aa4.41□□□□□ -1.7
VPS29-202ENST00000447578 TMEM191BP0C7N4 346 aa4.41□□□□□ -1.7
VPS29-202ENST00000447578 TMIGD3P0DMS9 266 aaPredicted RBP4.41□□□□□ -1.7
VPS29-202ENST00000447578 PORP16435 677 aaPredicted RBP4.41□□□□□ -1.7
VPS29-202ENST00000447578 CYP3A7P24462 503 aa4.41□□□□□ -1.7
VPS29-202ENST00000447578 NFKBIAP25963 317 aa4.41□□□□□ -1.7
VPS29-202ENST00000447578 MCM5P33992 734 aa4.41□□□□□ -1.7
VPS29-202ENST00000447578 GALNSP34059 522 aa4.41□□□□□ -1.7
VPS29-202ENST00000447578 RGS2P41220 211 aa4.41□□□□□ -1.7
VPS29-202ENST00000447578 TERF1P54274 439 aa4.41□□□□□ -1.7
VPS29-202ENST00000447578 TAS2R50P59544 299 aa4.41□□□□□ -1.7
VPS29-202ENST00000447578 SUMO2P61956 95 aaKnown RBP4.41□□□□□ -1.7
VPS29-202ENST00000447578 ZNF91Q05481 1191 aa4.41□□□□□ -1.7
VPS29-202ENST00000447578 ALKBH1Q13686 389 aaKnown RBP4.41□□□□□ -1.7
VPS29-202ENST00000447578 ALDH1L2Q3SY69 923 aa4.41□□□□□ -1.7
VPS29-202ENST00000447578 MIDNQ504T8 468 aa4.41□□□□□ -1.7
VPS29-202ENST00000447578 ZNF766Q5HY98 468 aa4.41□□□□□ -1.7
VPS29-202ENST00000447578 IKBIPQ70UQ0 350 aa4.41□□□□□ -1.7
VPS29-202ENST00000447578 MEPCEQ7L2J0 689 aaKnown RBP4.41□□□□□ -1.7
VPS29-202ENST00000447578 CNTROBQ8N137 903 aa4.41□□□□□ -1.7
VPS29-202ENST00000447578 GPATCH11Q8N954 259 aa4.41□□□□□ -1.7
VPS29-202ENST00000447578 TNIP2Q8NFZ5 429 aa4.41□□□□□ -1.7
VPS29-202ENST00000447578 OR52L2PQ8NGH6 319 aa4.41□□□□□ -1.7
VPS29-202ENST00000447578 OSR1Q8TAX0 266 aaPredicted RBP4.41□□□□□ -1.7
VPS29-202ENST00000447578 CTHRC1Q96CG8 243 aa4.41□□□□□ -1.7
VPS29-202ENST00000447578 ELP4Q96EB1 424 aa4.41□□□□□ -1.7
VPS29-202ENST00000447578 SAAL1Q96ER3 474 aa4.41□□□□□ -1.7
VPS29-202ENST00000447578 CCDC17Q96LX7 622 aa4.41□□□□□ -1.7
VPS29-202ENST00000447578 CINPQ9BW66 212 aaPredicted RBP4.41□□□□□ -1.7
VPS29-202ENST00000447578 FTOQ9C0B1 505 aaKnown RBP eCLIP4.41□□□□□ -1.7
VPS29-202ENST00000447578 CTDSP1Q9GZU7 261 aa4.41□□□□□ -1.7
VPS29-202ENST00000447578 RANBP17Q9H2T7 1088 aaKnown RBP4.41□□□□□ -1.7
VPS29-202ENST00000447578 TTYH1Q9H313 450 aaPredicted RBP4.41□□□□□ -1.7
VPS29-202ENST00000447578 TMEM184CQ9NVA4 438 aa4.41□□□□□ -1.7
VPS29-202ENST00000447578 HCN3Q9P1Z3 774 aa4.41□□□□□ -1.7
VPS29-202ENST00000447578 RPS6KA6Q9UK32 745 aa4.41□□□□□ -1.7
VPS29-202ENST00000447578 AMFRQ9UKV5 643 aa4.41□□□□□ -1.7
VPS29-202ENST00000447578 LYVE1Q9Y5Y7 322 aa4.41□□□□□ -1.7
VPS29-202ENST00000447578 COPG1Q9Y678 874 aaKnown RBP4.41□□□□□ -1.7
VPS29-202ENST00000447578 NLRP1Q9C000 1473 aa4.41□□□□□ -1.7
VPS29-202ENST00000447578 CLTCQ00610 1675 aaKnown RBP4.41□□□□□ -1.7
VPS29-202ENST00000447578 METP08581 1390 aa4.4□□□□□ -1.7
VPS29-202ENST00000447578 ADGRB2O60241 1585 aa4.4□□□□□ -1.7
VPS29-202ENST00000447578 PPIP5K1Q6PFW1 1433 aa4.4□□□□□ -1.7
VPS29-202ENST00000447578 GOLGA6L10A0A0M3HER8 536 aa4.4□□□□□ -1.71
VPS29-202ENST00000447578 A0A0U1RQG5 324 aaPredicted RBP4.4□□□□□ -1.71
VPS29-202ENST00000447578 A0A1W2PRQ8 180 aa4.4□□□□□ -1.71
VPS29-202ENST00000447578 CD8B2A6NJW9 211 aa4.4□□□□□ -1.71
VPS29-202ENST00000447578 C3orf70A6NLC5 250 aaPredicted RBP4.4□□□□□ -1.71
VPS29-202ENST00000447578 TEX22C9J3V5 150 aa4.4□□□□□ -1.71
VPS29-202ENST00000447578 TMPRSS11DO60235 418 aa4.4□□□□□ -1.71
VPS29-202ENST00000447578 CCNDBP1O95273 360 aa4.4□□□□□ -1.71
VPS29-202ENST00000447578 MLYCDO95822 493 aa4.4□□□□□ -1.71
VPS29-202ENST00000447578 DNTTP04053 509 aa4.4□□□□□ -1.71
VPS29-202ENST00000447578 ALDOAP04075 364 aaKnown RBP4.4□□□□□ -1.71
VPS29-202ENST00000447578 ALPLP05186 524 aa4.4□□□□□ -1.71
VPS29-202ENST00000447578 HMOX1P09601 288 aa4.4□□□□□ -1.71
VPS29-202ENST00000447578 SCP2P22307 547 aa4.4□□□□□ -1.71
VPS29-202ENST00000447578 PRKAR2BP31323 418 aa4.4□□□□□ -1.71
VPS29-202ENST00000447578 DEKP35659 375 aaKnown RBP4.4□□□□□ -1.71
VPS29-202ENST00000447578 UFM1P61960 85 aa4.4□□□□□ -1.71
VPS29-202ENST00000447578 ARHGAP8P85298 464 aa4.4□□□□□ -1.71
VPS29-202ENST00000447578 MC1RQ01726 317 aa4.4□□□□□ -1.71
VPS29-202ENST00000447578 CREB5Q02930 508 aa4.4□□□□□ -1.71
VPS29-202ENST00000447578 CCDC15Q0P6D6 951 aa4.4□□□□□ -1.71
VPS29-202ENST00000447578 CHAF1BQ13112 559 aa4.4□□□□□ -1.71
VPS29-202ENST00000447578 MVPQ14764 893 aaKnown RBP4.4□□□□□ -1.71
VPS29-202ENST00000447578 LEXMQ3ZCV2 418 aa4.4□□□□□ -1.71
VPS29-202ENST00000447578 PIP4P1Q86T03 277 aa4.4□□□□□ -1.71
VPS29-202ENST00000447578 PNPLA1Q8N8W4 532 aa4.4□□□□□ -1.71
VPS29-202ENST00000447578 SRFBP1Q8NEF9 429 aaKnown RBP4.4□□□□□ -1.71
VPS29-202ENST00000447578 ZNF398Q8TD17 642 aa4.4□□□□□ -1.71
VPS29-202ENST00000447578 GLMPQ8WWB7 406 aa4.4□□□□□ -1.71
VPS29-202ENST00000447578 FYTTD1Q96QD9 318 aaKnown RBP4.4□□□□□ -1.71
VPS29-202ENST00000447578 SIGLEC11Q96RL6 698 aa4.4□□□□□ -1.71
VPS29-202ENST00000447578 EYA3Q99504 573 aa4.4□□□□□ -1.71
VPS29-202ENST00000447578 NPAS1Q99742 590 aa4.4□□□□□ -1.71
VPS29-202ENST00000447578 ELOVL1Q9BW60 279 aa4.4□□□□□ -1.71
VPS29-202ENST00000447578 RWDD1Q9H446 243 aaPredicted RBP4.4□□□□□ -1.71
VPS29-202ENST00000447578 BRF2Q9HAW0 419 aa4.4□□□□□ -1.71
VPS29-202ENST00000447578 USP29Q9HBJ7 922 aa4.4□□□□□ -1.71
VPS29-202ENST00000447578 SEMA4BQ9NPR2 832 aaPredicted RBP4.4□□□□□ -1.71
VPS29-202ENST00000447578 HCFC1R1Q9NWW0 138 aa4.4□□□□□ -1.71
VPS29-202ENST00000447578 ZDHHC7Q9NXF8 308 aa4.4□□□□□ -1.71
VPS29-202ENST00000447578 KCND2Q9NZV8 630 aa4.4□□□□□ -1.71
VPS29-202ENST00000447578 NFKBIL1Q9UBC1 381 aaPredicted RBP4.4□□□□□ -1.71
VPS29-202ENST00000447578 POLKQ9UBT6 870 aa4.4□□□□□ -1.71
VPS29-202ENST00000447578 KLQ9UEF7 1012 aa4.4□□□□□ -1.71
VPS29-202ENST00000447578 SARDHQ9UL12 918 aa4.4□□□□□ -1.71
VPS29-202ENST00000447578 PCDHGB4Q9UN71 923 aa4.4□□□□□ -1.71
VPS29-202ENST00000447578 ATP7BP35670 1465 aa4.4□□□□□ -1.71
VPS29-202ENST00000447578 IL16Q14005 1332 aa4.4□□□□□ -1.71
VPS29-202ENST00000447578 KDM3AQ9Y4C1 1321 aa4.4□□□□□ -1.71
VPS29-202ENST00000447578 PNPLA6Q8IY17 1366 aa4.4□□□□□ -1.71
VPS29-202ENST00000447578 TNRQ92752 1358 aa4.4□□□□□ -1.71
VPS29-202ENST00000447578 TSPOAP1O95153 1857 aa4.39□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms